Strain Fitness in Sphingobium sp. HT1-2 around GFF1911

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,933,618	-				+0.4
1,933,650	+				-0.5
1,933,650	+				+0.7
1,933,670	+				+0.1
1,933,685	-				+0.2
1,933,695	-				-0.2
1,933,700	+				+1.0
1,933,708	-				-0.8
1,933,748	+				-0.8
1,933,765	+				+0.1
1,933,767	-				-0.6
1,933,774	+				-1.3
1,933,774	+				+1.1
1,933,782	-				-0.7
1,933,873	+		GFF1911	0.11	+0.5
1,933,946	-		GFF1911	0.21	+0.4
1,933,953	+		GFF1911	0.22	-0.4
1,933,957	+		GFF1911	0.22	+0.1
1,933,957	+		GFF1911	0.22	+0.0
1,933,957	+		GFF1911	0.22	-1.2
1,933,957	+		GFF1911	0.22	-1.1
1,933,965	-		GFF1911	0.23	-0.2
1,933,975	+		GFF1911	0.24	-0.8
1,933,992	+		GFF1911	0.27	+1.1
1,933,992	+		GFF1911	0.27	+0.5
1,933,992	+		GFF1911	0.27	-1.5
1,934,008	-		GFF1911	0.29	+0.1
1,934,015	-		GFF1911	0.29	-0.3
1,934,036	+		GFF1911	0.32	-0.2
1,934,053	-		GFF1911	0.34	-1.9
1,934,064	+		GFF1911	0.36	-2.3
1,934,072	+		GFF1911	0.37	+1.0
1,934,088	-		GFF1911	0.39	+1.0
1,934,119	-		GFF1911	0.43	-1.3
1,934,119	-		GFF1911	0.43	-0.5
1,934,125	-		GFF1911	0.44	+1.2
1,934,189	-		GFF1911	0.52	-1.6
1,934,189	-		GFF1911	0.52	+0.5
1,934,193	-		GFF1911	0.52	+1.0
1,934,193	-		GFF1911	0.52	-1.2
1,934,226	-		GFF1911	0.57	-0.2
1,934,226	-		GFF1911	0.57	-0.6
1,934,256	+		GFF1911	0.60	+0.5
1,934,263	-		GFF1911	0.61	+0.7
1,934,285	-		GFF1911	0.64	-1.7
1,934,305	+		GFF1911	0.67	-0.7
1,934,310	+		GFF1911	0.67	-1.5
1,934,310	+		GFF1911	0.67	+0.5
1,934,310	+		GFF1911	0.67	+0.2
1,934,313	-		GFF1911	0.68	-0.3
1,934,315	+		GFF1911	0.68	+0.9
1,934,315	+		GFF1911	0.68	+0.7
1,934,315	+		GFF1911	0.68	+1.2
1,934,315	+		GFF1911	0.68	-0.1
1,934,318	-		GFF1911	0.68	-0.9
1,934,318	-		GFF1911	0.68	-1.6
1,934,318	-		GFF1911	0.68	-0.2
1,934,323	-		GFF1911	0.69	-0.2
1,934,323	-		GFF1911	0.69	-1.6
1,934,323	-		GFF1911	0.69	+0.8
1,934,323	-		GFF1911	0.69	+0.1
1,934,352	+		GFF1911	0.73	+0.4
1,934,357	-		GFF1911	0.73	+1.1
1,934,359	+		GFF1911	0.74	+0.9
1,934,427	+		GFF1911	0.82	-0.4
1,934,430	-		GFF1911	0.83	+0.7
1,934,432	+		GFF1911	0.83	+0.2
1,934,436	+		GFF1911	0.83	-0.1
1,934,437	+		GFF1911	0.84	-0.6
1,934,440	-		GFF1911	0.84	-0.7
1,934,445	-		GFF1911	0.85	+0.8
1,934,456	+		GFF1911	0.86	-1.6
1,934,461	+		GFF1911	0.87	+0.8
1,934,461	+		GFF1911	0.87	-0.0
1,934,461	+		GFF1911	0.87	+0.8
1,934,466	+		GFF1911	0.87	+0.4
1,934,469	-		GFF1911	0.88	-1.3
1,934,471	+		GFF1911	0.88	+0.1
1,934,471	+		GFF1911	0.88	-0.8
1,934,479	-		GFF1911	0.89	+0.8
1,934,486	-		GFF1911	0.90	+1.1
1,934,491	-				+0.5
1,934,509	+				+0.9
1,934,519	-				-1.7
1,934,520	-				-2.1
1,934,520	-				+1.2
1,934,545	+				-0.1
1,934,546	+				+0.8
1,934,553	-				+0.1
1,934,574	-				-2.3
1,934,579	+				+0.9
1,934,582	+				-0.5
1,934,592	-				+0.4
1,934,612	+				-1.3
1,934,618	+				-4.4
1,934,618	+				+0.5
1,934,620	+				+0.9
1,934,621	-				-1.3
1,934,653	-				+0.4
1,934,659	-				-1.8
1,934,669	-				+1.2
1,934,672	+				-1.5
1,934,679	-				-0.1
1,934,680	-				-2.1
1,934,710	-				-0.6
1,934,715	+				+0.0
1,934,715	+				-0.3
1,934,715	+				-0.6
1,934,723	-				+0.0
1,934,723	-				-1.7
1,934,728	-				-0.3
1,934,728	-				-0.2
1,934,753	+				-1.1
1,934,753	+				+0.1
1,934,753	+				-0.7
1,934,753	+				-1.0
1,934,753	+				-0.2
1,934,761	-				-0.3
1,934,761	-				-0.7
1,934,761	-				+0.2
1,934,761	-				+0.7
1,934,772	+				-1.2
1,934,772	+				-0.4
1,934,772	+				+0.7
1,934,772	+				+0.8
1,934,772	+				+0.4
1,934,772	+				+0.2
1,934,772	+				+0.4
1,934,772	+				-1.2
1,934,772	+				-0.8
1,934,772	+				+0.3
1,934,772	+				-0.5
1,934,772	+				-0.6
1,934,772	+				+1.7
1,934,772	+				+0.4
1,934,772	+				-1.5
1,934,772	+				-0.6
1,934,772	+				+0.0
1,934,772	+				+1.6
1,934,772	+				-0.5
1,934,772	+				-0.6
1,934,772	-				-1.5
1,934,777	+				-0.9
1,934,780	-				-0.0
1,934,780	-				-0.2
1,934,780	-				+0.6
1,934,780	-				+0.1
1,934,780	-				+1.1
1,934,780	-				+0.8
1,934,780	-				-1.2
1,934,780	-				+2.2
1,934,780	-				-0.0
1,934,780	-				-0.3
1,934,780	-				+0.9
1,934,780	-				-0.3
1,934,780	-				-0.5
1,934,780	-				-1.0
1,934,780	-				+0.3
1,934,780	-				-0.5
1,934,780	-				+0.2
1,934,780	-				-0.5
1,934,780	-				+1.0
1,934,780	-				-0.0
1,934,780	-				+0.3
1,934,782	-				-0.5
1,934,785	-				-1.7
1,934,798	+				-0.3
1,934,798	+				+0.5
1,934,804	+				-0.8
1,934,809	+				+0.0
1,934,817	+				-2.0
1,934,829	+				-0.8
1,934,831	+				+0.2
1,934,837	-				-1.6
1,934,839	+		GFF1912	0.10	-1.1
1,934,839	-		GFF1912	0.10	+0.9
1,934,844	+		GFF1912	0.10	-0.1
1,934,852	-		GFF1912	0.11	-0.5
1,934,852	-		GFF1912	0.11	-0.0
1,934,866	+		GFF1912	0.12	+0.9
1,934,874	-		GFF1912	0.12	-0.0
1,934,874	-		GFF1912	0.12	-0.6
1,934,874	-		GFF1912	0.12	-0.9
1,934,884	+		GFF1912	0.13	-0.1
1,934,884	+		GFF1912	0.13	-0.5
1,934,902	-		GFF1912	0.14	-0.8
1,934,903	+		GFF1912	0.14	+1.0
1,934,907	-		GFF1912	0.15	+1.0
1,934,907	-		GFF1912	0.15	-2.3
1,934,921	-		GFF1912	0.15	+0.8
1,934,936	+		GFF1912	0.16	-1.9
1,934,939	-		GFF1912	0.17	+0.4
1,934,944	-		GFF1912	0.17	-2.1
1,934,947	+		GFF1912	0.17	+0.1
1,934,951	+		GFF1912	0.17	+0.4
1,934,951	+		GFF1912	0.17	-0.3
1,934,951	+		GFF1912	0.17	+0.5
1,934,955	-		GFF1912	0.18	-0.2
1,934,955	-		GFF1912	0.18	-0.4
1,934,955	-		GFF1912	0.18	-0.2
1,934,959	-		GFF1912	0.18	-1.0
1,934,959	-		GFF1912	0.18	-0.1
1,934,959	-		GFF1912	0.18	-1.6
1,934,959	-		GFF1912	0.18	-0.8
1,934,959	-		GFF1912	0.18	+0.8
1,934,969	-		GFF1912	0.19	-0.1
1,934,970	+		GFF1912	0.19	-2.8
1,934,970	+		GFF1912	0.19	-0.3
1,934,970	+		GFF1912	0.19	+0.2
1,934,978	-		GFF1912	0.19	-0.9
1,934,978	-		GFF1912	0.19	-1.4
1,935,009	+		GFF1912	0.21	-1.8
1,935,075	+		GFF1912	0.26	-0.6
1,935,091	-		GFF1912	0.27	+0.2
1,935,135	+		GFF1912	0.30	+0.0
1,935,151	+		GFF1912	0.31	-0.8
1,935,151	+		GFF1912	0.31	-1.1
1,935,159	-		GFF1912	0.31	-0.0
1,935,190	+		GFF1912	0.33	+0.4
1,935,190	+		GFF1912	0.33	-0.5
1,935,190	+		GFF1912	0.33	+0.9
1,935,190	+		GFF1912	0.33	+1.5
1,935,190	+		GFF1912	0.33	-1.6
1,935,193	-		GFF1912	0.33	-0.3
1,935,193	-		GFF1912	0.33	+0.5
1,935,195	-		GFF1912	0.34	-1.6
1,935,198	-		GFF1912	0.34	-0.7
1,935,198	-		GFF1912	0.34	+0.2
1,935,198	-		GFF1912	0.34	-0.1
1,935,198	-		GFF1912	0.34	-1.6
1,935,208	-		GFF1912	0.34	-1.0
1,935,239	+		GFF1912	0.36	-0.3
1,935,277	-		GFF1912	0.39	-1.1
1,935,280	-		GFF1912	0.39	-2.0
1,935,352	+		GFF1912	0.44	-0.5
1,935,359	-		GFF1912	0.44	+0.4
1,935,384	+		GFF1912	0.46	-0.6
1,935,392	-		GFF1912	0.47	+0.4
1,935,392	-		GFF1912	0.47	-0.2
1,935,395	+		GFF1912	0.47	+1.3
1,935,398	+		GFF1912	0.47	-0.7
1,935,405	+		GFF1912	0.47	-0.2
1,935,405	+		GFF1912	0.47	-1.0
1,935,406	+		GFF1912	0.47	+0.8
1,935,406	+		GFF1912	0.47	+0.0
1,935,408	+		GFF1912	0.48	+0.0
1,935,413	-		GFF1912	0.48	-1.1
1,935,413	-		GFF1912	0.48	-0.7
1,935,414	-		GFF1912	0.48	+0.2
1,935,414	-		GFF1912	0.48	-0.2
1,935,416	+		GFF1912	0.48	-1.8
1,935,418	-		GFF1912	0.48	-1.3
1,935,466	+		GFF1912	0.51	-0.6
1,935,466	+		GFF1912	0.51	+0.5
1,935,474	+		GFF1912	0.52	-0.1
1,935,474	-		GFF1912	0.52	-0.8
1,935,474	-		GFF1912	0.52	+0.3
1,935,476	+		GFF1912	0.52	-0.9
1,935,476	+		GFF1912	0.52	-0.9
1,935,476	+		GFF1912	0.52	-2.5
1,935,476	+		GFF1912	0.52	+1.2
1,935,476	+		GFF1912	0.52	-0.8
1,935,481	+		GFF1912	0.52	-0.4
1,935,484	-		GFF1912	0.53	-2.6
1,935,484	-		GFF1912	0.53	-0.6
1,935,484	-		GFF1912	0.53	+0.2
1,935,486	+		GFF1912	0.53	-0.3
1,935,494	-		GFF1912	0.53	-1.6
1,935,514	+		GFF1912	0.55	+0.7
1,935,522	-		GFF1912	0.55	-0.1
1,935,522	-		GFF1912	0.55	-0.4
1,935,524	+		GFF1912	0.55	-0.3
1,935,524	+		GFF1912	0.55	-0.4
1,935,524	+		GFF1912	0.55	+0.9
1,935,524	+		GFF1912	0.55	-0.3
1,935,532	-		GFF1912	0.56	+0.7
1,935,539	+		GFF1912	0.56	+1.5
1,935,539	+		GFF1912	0.56	+1.0
1,935,547	-		GFF1912	0.57	-1.3
1,935,547	-		GFF1912	0.57	-0.2
1,935,547	-		GFF1912	0.57	-1.8
1,935,557	-		GFF1912	0.57	-0.8
1,935,557	-		GFF1912	0.57	+0.9
1,935,564	+		GFF1912	0.58	-2.3
1,935,564	+		GFF1912	0.58	+1.4