Strain Fitness in Sphingobium sp. HT1-2 around GFF1795

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,816,328	-				+0.8
1,816,328	-				-2.7
1,816,328	-				-1.2
1,816,330	+				-2.1
1,816,352	-				-0.7
1,816,354	-				+0.2
1,816,354	-				-0.2
1,816,396	+				-2.0
1,816,417	+				-0.7
1,816,425	-				-0.9
1,816,425	-				-0.5
1,816,431	-				-1.0
1,816,441	-				+0.6
1,816,451	-				-0.8
1,816,457	-				-0.3
1,816,541	+		GFF1793	0.29	-0.2
1,816,560	+		GFF1793	0.39	-1.2
1,816,593	+		GFF1793	0.55	+0.0
1,816,616	-		GFF1793	0.66	+1.1
1,816,618	+		GFF1793	0.67	-0.4
1,816,618	+		GFF1793	0.67	-0.1
1,816,618	+		GFF1793	0.67	+0.5
1,816,618	+		GFF1793	0.67	-2.2
1,816,618	+		GFF1793	0.67	-0.8
1,816,618	+		GFF1793	0.67	-0.5
1,816,618	+		GFF1793	0.67	+0.1
1,816,626	-		GFF1793	0.71	-0.9
1,816,626	-		GFF1793	0.71	-1.7
1,816,626	-		GFF1793	0.71	+0.0
1,816,629	+		GFF1793	0.73	+0.0
1,816,629	+		GFF1793	0.73	-3.1
1,816,629	+		GFF1793	0.73	-0.2
1,816,634	+		GFF1793	0.75	+0.2
1,816,634	+		GFF1793	0.75	-0.3
1,816,634	+		GFF1793	0.75	+1.0
1,816,634	+		GFF1793	0.75	-0.7
1,816,634	+		GFF1793	0.75	+0.2
1,816,634	+		GFF1793	0.75	-1.2
1,816,634	+		GFF1793	0.75	-0.4
1,816,634	+		GFF1793	0.75	-0.5
1,816,634	+		GFF1793	0.75	+1.0
1,816,634	+		GFF1793	0.75	+0.1
1,816,634	+		GFF1793	0.75	-0.8
1,816,634	+		GFF1793	0.75	+0.7
1,816,634	+		GFF1793	0.75	-2.5
1,816,642	-		GFF1793	0.79	-1.9
1,816,642	-		GFF1793	0.79	-2.5
1,816,642	-		GFF1793	0.79	+0.3
1,816,642	-		GFF1793	0.79	-0.5
1,816,642	-		GFF1793	0.79	-1.0
1,816,647	+		GFF1793	0.81	+0.8
1,816,647	+		GFF1793	0.81	-1.6
1,816,651	+		GFF1793	0.83	-1.7
1,816,651	+		GFF1793	0.83	-0.6
1,816,659	-		GFF1793	0.87	+1.1
1,816,659	-		GFF1793	0.87	-0.3
1,816,660	-		GFF1793	0.88	+0.2
1,816,679	-				+0.6
1,816,698	+				+1.0
1,816,705	-				-1.0
1,816,706	-				-0.8
1,816,710	+				-0.2
1,816,710	+				-0.1
1,816,747	-		GFF1794	0.10	-1.7
1,816,749	+		GFF1794	0.11	-0.2
1,816,749	+		GFF1794	0.11	+1.0
1,816,755	-		GFF1794	0.12	-1.5
1,816,757	-		GFF1794	0.12	-0.0
1,816,769	+		GFF1794	0.14	-1.8
1,816,799	+		GFF1794	0.20	-1.9
1,816,841	+		GFF1794	0.27	-0.7
1,816,841	+		GFF1794	0.27	+1.2
1,816,841	+		GFF1794	0.27	-0.3
1,816,847	+		GFF1794	0.28	-1.5
1,816,847	+		GFF1794	0.28	-2.1
1,816,849	-		GFF1794	0.28	+0.5
1,816,849	-		GFF1794	0.28	-0.7
1,816,849	-		GFF1794	0.28	-0.1
1,816,851	+		GFF1794	0.29	-0.3
1,816,853	-		GFF1794	0.29	-0.4
1,816,855	-		GFF1794	0.29	-0.8
1,816,860	-		GFF1794	0.30	+0.8
1,816,948	+		GFF1794	0.46	+0.4
1,816,948	+		GFF1794	0.46	-1.4
1,817,036	+		GFF1794	0.61	+0.6
1,817,036	+		GFF1794	0.61	+0.6
1,817,036	+		GFF1794	0.61	-1.1
1,817,039	-		GFF1794	0.61	+0.8
1,817,044	-		GFF1794	0.62	-0.7
1,817,044	-		GFF1794	0.62	-1.7
1,817,044	-		GFF1794	0.62	-1.7
1,817,044	-		GFF1794	0.62	-1.5
1,817,044	-		GFF1794	0.62	-0.2
1,817,044	-		GFF1794	0.62	+0.1
1,817,044	-		GFF1794	0.62	+0.4
1,817,044	-		GFF1794	0.62	+1.1
1,817,049	+		GFF1794	0.63	+1.0
1,817,059	-		GFF1794	0.65	-0.3
1,817,082	+		GFF1794	0.69	-0.8
1,817,087	+		GFF1794	0.70	-1.0
1,817,087	+		GFF1794	0.70	-0.3
1,817,087	+		GFF1794	0.70	+0.8
1,817,092	+		GFF1794	0.71	+0.0
1,817,092	+		GFF1794	0.71	+0.2
1,817,095	-		GFF1794	0.71	+1.3
1,817,095	-		GFF1794	0.71	+0.5
1,817,100	-		GFF1794	0.72	-0.5
1,817,103	+		GFF1794	0.73	-0.8
1,817,108	+		GFF1794	0.73	-1.3
1,817,116	-		GFF1794	0.75	+0.0
1,817,121	-		GFF1794	0.76	+0.7
1,817,121	-		GFF1794	0.76	+0.8
1,817,121	-		GFF1794	0.76	-2.4
1,817,121	-		GFF1794	0.76	+0.9
1,817,121	-		GFF1794	0.76	-0.4
1,817,154	+		GFF1794	0.82	+0.9
1,817,156	-		GFF1794	0.82	-0.2
1,817,167	+		GFF1794	0.84	-1.1
1,817,187	+		GFF1794	0.87	-2.8
1,817,229	+				-0.4
1,817,229	+				-0.3
1,817,229	+				-1.5
1,817,229	+				-0.6
1,817,237	-				+0.2
1,817,237	-				+0.4
1,817,239	+				+0.5
1,817,239	+				+0.8
1,817,239	+				+0.7
1,817,242	-				+0.7
1,817,244	+				-0.3
1,817,247	-				+1.5
1,817,247	-				-1.5
1,817,258	+				-0.2
1,817,266	-				+0.8
1,817,266	-				-1.2
1,817,283	-				+0.2
1,817,285	+				-1.2
1,817,290	+				-0.2
1,817,290	+				-1.2
1,817,290	+				-1.8
1,817,293	-				-0.7
1,817,293	-				-0.9
1,817,298	-				-2.5
1,817,298	-				-2.1
1,817,298	-				-1.0
1,817,308	+				-0.6
1,817,308	+				-0.3
1,817,308	+				-0.2
1,817,316	-				+1.8
1,817,346	-		GFF1795	0.17	+0.3
1,817,371	-		GFF1795	0.25	+0.1
1,817,378	-		GFF1795	0.27	+0.5
1,817,389	+		GFF1795	0.30	-1.6
1,817,389	+		GFF1795	0.30	+1.5
1,817,389	+		GFF1795	0.30	-0.0
1,817,389	+		GFF1795	0.30	-1.8
1,817,392	-		GFF1795	0.31	-0.2
1,817,397	-		GFF1795	0.32	-0.3
1,817,435	+		GFF1795	0.44	-1.3
1,817,435	+		GFF1795	0.44	+1.6
1,817,435	+		GFF1795	0.44	+0.3
1,817,440	+		GFF1795	0.45	+0.4
1,817,440	+		GFF1795	0.45	+0.5
1,817,440	+		GFF1795	0.45	-0.7
1,817,440	+		GFF1795	0.45	+1.1
1,817,440	+		GFF1795	0.45	+0.9
1,817,440	+		GFF1795	0.45	-0.4
1,817,448	-		GFF1795	0.47	-2.7
1,817,448	-		GFF1795	0.47	-3.0
1,817,448	-		GFF1795	0.47	-1.0
1,817,448	-		GFF1795	0.47	-0.3
1,817,448	-		GFF1795	0.47	-1.0
1,817,448	-		GFF1795	0.47	+0.8
1,817,448	-		GFF1795	0.47	-0.5
1,817,448	-		GFF1795	0.47	-1.9
1,817,448	-		GFF1795	0.47	-1.8
1,817,452	+		GFF1795	0.49	-0.7
1,817,463	+		GFF1795	0.52	+0.6
1,817,465	+		GFF1795	0.53	-1.4
1,817,465	+		GFF1795	0.53	-0.7
1,817,470	+		GFF1795	0.54	+0.2
1,817,470	+		GFF1795	0.54	+0.4
1,817,473	-		GFF1795	0.55	-0.9
1,817,478	-		GFF1795	0.56	-1.0
1,817,483	-		GFF1795	0.58	-1.2
1,817,483	-		GFF1795	0.58	-1.9
1,817,483	-		GFF1795	0.58	+0.7
1,817,490	+		GFF1795	0.60	+0.2
1,817,490	+		GFF1795	0.60	-0.6
1,817,490	+		GFF1795	0.60	-2.4
1,817,495	+		GFF1795	0.61	+0.2
1,817,498	-		GFF1795	0.62	+0.1
1,817,498	-		GFF1795	0.62	-0.7
1,817,498	-		GFF1795	0.62	+0.7
1,817,498	-		GFF1795	0.62	+0.1
1,817,498	-		GFF1795	0.62	+0.5
1,817,503	-		GFF1795	0.64	+0.4
1,817,512	+		GFF1795	0.66	-0.2
1,817,512	+		GFF1795	0.66	-1.3
1,817,520	-		GFF1795	0.69	+0.8
1,817,529	-		GFF1795	0.71	-0.7
1,817,579	-		GFF1795	0.86	+0.2
1,817,615	-				+0.6
1,817,615	-				-0.0
1,817,648	+				-2.1
1,817,648	+				-0.4
1,817,648	+				+0.7
1,817,671	+				-0.5
1,817,673	-				+0.4
1,817,702	-				-0.4
1,817,704	+				+0.4
1,817,711	+				-0.3
1,817,711	+				+0.7
1,817,719	-				+0.7
1,817,742	-				-0.8
1,817,742	-				-0.6
1,817,768	+				+0.3
1,817,770	-				-1.8
1,817,789	+				+1.1
1,817,789	+				-3.2
1,817,797	-				-1.6
1,817,797	-				-1.1
1,817,797	-				+1.5
1,817,818	-				-0.5
1,817,830	-				+0.7
1,817,883	+				-1.0
1,817,883	+				-0.3
1,817,883	+				-1.0
1,817,883	+				+1.1
1,817,883	+				-1.2
1,817,888	+				-0.9
1,817,888	+				-1.7
1,817,888	+				-0.7
1,817,955	-				-0.4
1,817,984	+				+0.6
1,817,984	+				-0.2
1,818,046	+				-1.2
1,818,049	+				-0.3
1,818,090	+				-0.4
1,818,090	+				+0.2
1,818,090	+				-2.1
1,818,090	+				-0.6
1,818,098	-				+0.4
1,818,098	-				-0.1
1,818,109	+				+0.7
1,818,138	+				+0.5
1,818,139	+				+1.4
1,818,146	-				-0.1
1,818,162	-				-1.8
1,818,182	+				+1.0
1,818,183	+				-1.3
1,818,192	+				-0.9
1,818,200	-				+0.7
1,818,206	+				+0.8
1,818,206	+				-0.8
1,818,216	+				+0.0
1,818,216	+				-0.5
1,818,224	-				+1.0
1,818,226	+				+0.3
1,818,226	+				-0.3
1,818,236	+				-0.1
1,818,246	+				-0.6
1,818,260	+				-0.8
1,818,260	+				-2.0
1,818,260	+				-0.2
1,818,261	-				+0.6
1,818,268	-				-0.7
1,818,285	+				-0.5
1,818,297	+				-2.7
1,818,297	+				+1.1
1,818,297	+				-1.5
1,818,298	-				-0.9
1,818,305	-				-1.1
1,818,305	-				-0.0
1,818,305	-				-1.3
1,818,305	-				+0.0
1,818,307	+				+0.7
1,818,330	+				+0.5
1,818,340	-				+0.3
1,818,387	+				-0.0
1,818,409	+				-0.6
1,818,412	-				+0.0
1,818,412	-				-1.0
1,818,440	+				-2.4
1,818,498	+				-0.4
1,818,498	+				-1.5
1,818,498	+				-0.6
1,818,498	+				+0.1
1,818,506	-				+0.1
1,818,511	+				-0.8
1,818,577	+				+0.0