Strain Fitness in Sphingobium sp. HT1-2 around GFF1764

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,792,275	+		GFF1763	0.14	+0.1
1,792,275	+		GFF1763	0.14	-0.4
1,792,342	+		GFF1763	0.27	+0.3
1,792,342	+		GFF1763	0.27	-0.9
1,792,385	+		GFF1763	0.35	+1.2
1,792,387	-		GFF1763	0.35	-1.7
1,792,393	-		GFF1763	0.36	+0.9
1,792,419	-		GFF1763	0.41	+0.9
1,792,440	+		GFF1763	0.45	+0.8
1,792,448	-		GFF1763	0.47	-2.6
1,792,448	-		GFF1763	0.47	-2.0
1,792,448	-		GFF1763	0.47	+1.5
1,792,448	-		GFF1763	0.47	+1.8
1,792,455	+		GFF1763	0.48	-0.3
1,792,477	+		GFF1763	0.52	-1.0
1,792,477	+		GFF1763	0.52	+1.1
1,792,477	+		GFF1763	0.52	+2.0
1,792,477	+		GFF1763	0.52	+0.0
1,792,477	+		GFF1763	0.52	-0.2
1,792,483	+		GFF1763	0.53	+0.8
1,792,483	+		GFF1763	0.53	-0.3
1,792,483	+		GFF1763	0.53	+0.9
1,792,483	+		GFF1763	0.53	-0.2
1,792,483	+		GFF1763	0.53	-0.4
1,792,485	-		GFF1763	0.53	-0.7
1,792,485	-		GFF1763	0.53	-0.9
1,792,485	-		GFF1763	0.53	-0.1
1,792,485	-		GFF1763	0.53	-0.8
1,792,485	-		GFF1763	0.53	+0.3
1,792,485	-		GFF1763	0.53	-1.6
1,792,491	-		GFF1763	0.55	-2.0
1,792,491	-		GFF1763	0.55	+0.7
1,792,491	-		GFF1763	0.55	+1.1
1,792,491	-		GFF1763	0.55	-0.0
1,792,500	+		GFF1763	0.56	+1.7
1,792,500	+		GFF1763	0.56	-1.2
1,792,501	-		GFF1763	0.56	-0.2
1,792,513	+		GFF1763	0.59	-0.1
1,792,513	+		GFF1763	0.59	-0.8
1,792,513	+		GFF1763	0.59	+0.0
1,792,513	+		GFF1763	0.59	-2.9
1,792,521	+		GFF1763	0.60	+0.1
1,792,521	-		GFF1763	0.60	-0.5
1,792,521	-		GFF1763	0.60	-1.3
1,792,521	-		GFF1763	0.60	+0.3
1,792,529	-		GFF1763	0.62	+0.5
1,792,536	+		GFF1763	0.63	+0.6
1,792,536	+		GFF1763	0.63	-1.6
1,792,612	+		GFF1763	0.77	+0.3
1,792,620	-		GFF1763	0.79	-1.7
1,792,628	+		GFF1763	0.80	-1.6
1,792,671	+		GFF1763	0.88	-1.0
1,792,681	+				+0.9
1,792,681	+				-0.8
1,792,699	-				-0.6
1,792,701	-				-2.1
1,792,705	-				+0.1
1,792,705	-				-0.6
1,792,709	+				-0.8
1,792,714	+				+0.3
1,792,719	+				+0.7
1,792,773	+				+0.0
1,792,793	+				-0.5
1,792,848	+				-2.4
1,792,851	-				+0.3
1,792,859	+				-0.2
1,792,874	+				-1.7
1,792,888	+				+0.8
1,792,897	-				+0.4
1,792,899	+				+1.2
1,792,907	-				-0.0
1,792,907	-				-0.8
1,792,926	+				+1.4
1,792,936	+				-2.1
1,792,944	-				+0.9
1,792,948	+				+0.2
1,792,997	-				-0.5
1,793,005	+				+0.9
1,793,017	+				+0.7
1,793,020	-				-0.3
1,793,039	-				+0.6
1,793,044	+				+0.0
1,793,044	+				+1.0
1,793,052	-				-0.1
1,793,052	-				+0.0
1,793,054	+				-0.2
1,793,054	+				+0.5
1,793,054	+				-0.6
1,793,054	+				-0.6
1,793,059	+				-2.5
1,793,059	+				-1.7
1,793,059	+				+0.7
1,793,059	+				-1.2
1,793,059	+				+0.3
1,793,059	+				-1.3
1,793,062	-				+0.3
1,793,062	-				+0.6
1,793,062	-				-0.6
1,793,062	-				+0.3
1,793,067	-				-1.4
1,793,067	-				-1.0
1,793,067	-				+0.3
1,793,067	-				-0.7
1,793,095	+				-1.3
1,793,115	-				-0.7
1,793,117	+				-0.3
1,793,117	+				-0.3
1,793,120	-				-1.7
1,793,122	+				-1.2
1,793,122	+				+0.3
1,793,123	-				-0.9
1,793,125	-				+0.7
1,793,125	-				+0.3
1,793,125	-				-0.7
1,793,130	-				+0.6
1,793,130	-				+0.9
1,793,135	-				-0.7
1,793,135	-				+0.5
1,793,135	-				+0.0
1,793,140	-				-0.7
1,793,140	-				+0.3
1,793,140	-				-0.3
1,793,140	-				-0.3
1,793,140	-				-1.8
1,793,164	-				-1.1
1,793,240	-				+0.3
1,793,275	-				-0.2
1,793,422	-		GFF1764	0.18	-0.4
1,793,775	-		GFF1764	0.51	+0.3
1,793,827	-		GFF1764	0.56	-0.3
1,793,969	-		GFF1764	0.69	-1.8
1,794,002	-		GFF1764	0.72	-2.4
1,794,041	-		GFF1764	0.76	-2.4
1,794,052	-		GFF1764	0.77	-0.8
1,794,282	-				-0.9
1,794,321	-				-0.6
1,794,339	-				+0.7
1,794,347	+				-2.0
1,794,413	+				-0.5
1,794,417	-				+0.0
1,794,418	+				+0.3
1,794,426	-				+0.3
1,794,431	+				-0.5
1,794,431	+				+0.4
1,794,439	-				-0.0
1,794,444	+				-0.3
1,794,444	+				+1.0
1,794,452	-				+0.6
1,794,498	+				+1.0
1,794,498	+				-0.8
1,794,498	+				+0.4
1,794,506	-				+0.1
1,794,506	-				-0.6
1,794,506	-				-0.7
1,794,516	-				-0.2
1,794,567	-		GFF1765	0.17	-1.8
1,794,645	+		GFF1765	0.32	-0.2
1,794,648	-		GFF1765	0.33	-0.7
1,794,662	+		GFF1765	0.36	+0.8
1,794,670	+		GFF1765	0.37	-0.4
1,794,678	+		GFF1765	0.39	-1.0
1,794,678	-		GFF1765	0.39	+0.3
1,794,678	-		GFF1765	0.39	-1.4
1,794,684	-		GFF1765	0.40	-0.0
1,794,742	+		GFF1765	0.51	-0.7
1,794,742	+		GFF1765	0.51	-1.4
1,794,742	+		GFF1765	0.51	-1.6
1,794,742	+		GFF1765	0.51	-2.3
1,794,742	+		GFF1765	0.51	-0.2
1,794,750	-		GFF1765	0.53	-0.1
1,794,750	-		GFF1765	0.53	+0.3
1,794,750	-		GFF1765	0.53	+0.9
1,794,750	-		GFF1765	0.53	+0.1
1,794,771	+		GFF1765	0.57	+0.8
1,794,776	-		GFF1765	0.58	+0.9
1,794,782	+		GFF1765	0.59	-1.5
1,794,782	+		GFF1765	0.59	-1.3
1,794,791	+		GFF1765	0.61	+0.3
1,794,817	+		GFF1765	0.66	+0.5
1,794,820	-		GFF1765	0.67	-0.9
1,794,820	-		GFF1765	0.67	+0.6
1,794,855	+		GFF1765	0.74	+0.3
1,794,863	-		GFF1765	0.76	-0.3
1,794,863	-		GFF1765	0.76	-1.6
1,794,867	+		GFF1765	0.76	+1.0
1,794,867	+		GFF1765	0.76	-0.5
1,794,867	+		GFF1765	0.76	+0.0
1,794,875	-		GFF1765	0.78	-1.7
1,794,877	+		GFF1765	0.78	-1.7
1,794,880	-		GFF1765	0.79	-1.0
1,794,895	-		GFF1765	0.82	-1.7
1,794,914	-		GFF1765	0.86	+0.6
1,794,949	-				-0.6
1,794,949	-				-2.8
1,794,949	-				-1.9
1,794,977	-				-1.6
1,794,986	+				-0.7
1,794,993	+				-0.6
1,794,996	+				+0.1
1,794,996	+				-0.1
1,794,996	+				-0.3
1,794,996	+				-0.3
1,795,004	-				-1.7
1,795,004	-				-0.7
1,795,026	+				+0.1
1,795,036	-				-0.2
1,795,041	+				-1.7
1,795,048	+				-1.3
1,795,057	+				+0.6
1,795,057	+				-0.3
1,795,057	+				-0.6
1,795,059	+				-0.2
1,795,059	+				-0.7
1,795,059	-				+1.1
1,795,065	-				+0.3
1,795,065	-				-0.6
1,795,065	-				-1.0
1,795,065	-				-1.9
1,795,067	-				-0.1
1,795,067	-				+0.9
1,795,067	-				-1.6
1,795,105	+				-0.6
1,795,105	+				+0.7
1,795,105	+				-1.3
1,795,107	+				+0.4
1,795,107	+				+1.0
1,795,113	+				-0.4
1,795,113	-				-0.9
1,795,113	-				+0.9
1,795,113	-				+0.2
1,795,118	+				+0.3
1,795,118	+				-0.4
1,795,120	-				-1.4
1,795,121	-				-0.7
1,795,121	-				+1.0
1,795,125	+				+0.8
1,795,140	+				-0.7
1,795,168	-				-0.1
1,795,174	+				+0.8
1,795,182	-				+0.7
1,795,182	-				+1.0
1,795,210	+				-0.7
1,795,215	+				-0.2
1,795,215	+				-2.1
1,795,249	+		GFF1766	0.11	+1.5
1,795,257	-		GFF1766	0.12	+0.8
1,795,269	+		GFF1766	0.12	-2.3
1,795,278	-		GFF1766	0.13	-0.6