Strain Fitness in Sphingobium sp. HT1-2 around GFF1739

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,764,680	-				-0.5
1,764,687	+				-0.3
1,764,697	-				-0.3
1,764,705	-				+1.7
1,764,716	+				-0.1
1,764,736	+				-0.6
1,764,736	+				-0.1
1,764,745	+				+0.5
1,764,746	-				-0.1
1,764,753	-				-1.3
1,764,789	-				-0.1
1,764,799	+				-0.8
1,764,829	+				-2.1
1,764,834	+				-1.8
1,764,837	-				-1.5
1,764,852	+		GFF1738	0.11	+0.5
1,764,853	+		GFF1738	0.11	+0.8
1,764,858	+		GFF1738	0.12	-0.2
1,764,863	+		GFF1738	0.13	+0.3
1,764,863	+		GFF1738	0.13	-1.8
1,764,863	+		GFF1738	0.13	+0.1
1,764,866	-		GFF1738	0.13	+0.6
1,764,871	-		GFF1738	0.14	-0.3
1,764,871	-		GFF1738	0.14	+0.3
1,764,871	-		GFF1738	0.14	-1.9
1,764,921	-		GFF1738	0.20	+0.1
1,764,939	-		GFF1738	0.22	+0.3
1,764,968	+		GFF1738	0.26	+0.9
1,764,968	+		GFF1738	0.26	+0.1
1,764,976	-		GFF1738	0.27	-0.0
1,764,987	-		GFF1738	0.28	+0.9
1,764,989	+		GFF1738	0.28	-0.6
1,764,997	-		GFF1738	0.29	-1.2
1,764,997	-		GFF1738	0.29	-1.0
1,764,997	-		GFF1738	0.29	-0.7
1,765,004	+		GFF1738	0.30	-0.2
1,765,012	-		GFF1738	0.31	-0.4
1,765,013	-		GFF1738	0.31	-0.1
1,765,015	+		GFF1738	0.31	-0.1
1,765,026	+		GFF1738	0.33	-0.2
1,765,047	+		GFF1738	0.35	-0.7
1,765,059	-		GFF1738	0.37	+0.9
1,765,106	+		GFF1738	0.43	-0.5
1,765,111	+		GFF1738	0.43	-1.4
1,765,111	+		GFF1738	0.43	-1.6
1,765,111	+		GFF1738	0.43	+1.6
1,765,114	-		GFF1738	0.44	-0.3
1,765,119	-		GFF1738	0.44	-1.4
1,765,119	-		GFF1738	0.44	-1.3
1,765,119	-		GFF1738	0.44	+0.2
1,765,148	-		GFF1738	0.48	-0.0
1,765,149	+		GFF1738	0.48	+0.6
1,765,157	+		GFF1738	0.49	+0.3
1,765,157	+		GFF1738	0.49	-1.8
1,765,157	+		GFF1738	0.49	-0.4
1,765,157	+		GFF1738	0.49	-1.3
1,765,165	-		GFF1738	0.50	-2.2
1,765,165	-		GFF1738	0.50	+1.4
1,765,165	-		GFF1738	0.50	+0.0
1,765,165	-		GFF1738	0.50	-0.3
1,765,178	-		GFF1738	0.52	+0.3
1,765,201	-		GFF1738	0.54	-1.0
1,765,203	+		GFF1738	0.55	-0.6
1,765,222	-		GFF1738	0.57	-0.6
1,765,223	-		GFF1738	0.57	-0.4
1,765,223	-		GFF1738	0.57	-1.2
1,765,230	+		GFF1738	0.58	-0.9
1,765,230	+		GFF1738	0.58	-0.2
1,765,233	-		GFF1738	0.58	-0.0
1,765,233	-		GFF1738	0.58	+0.5
1,765,237	+		GFF1738	0.59	+1.7
1,765,238	-		GFF1738	0.59	-1.3
1,765,238	-		GFF1738	0.59	-1.9
1,765,244	+		GFF1738	0.60	-0.3
1,765,244	-		GFF1738	0.60	+0.2
1,765,251	-		GFF1738	0.61	+1.1
1,765,280	+		GFF1738	0.64	-0.4
1,765,288	-		GFF1738	0.65	-0.7
1,765,302	+		GFF1738	0.67	-0.2
1,765,310	-		GFF1738	0.68	-2.3
1,765,310	-		GFF1738	0.68	-0.6
1,765,310	-		GFF1738	0.68	+0.7
1,765,310	-		GFF1738	0.68	-0.9
1,765,313	+		GFF1738	0.68	+0.6
1,765,328	-		GFF1738	0.70	+1.4
1,765,344	-		GFF1738	0.72	-1.4
1,765,365	-		GFF1738	0.75	-0.3
1,765,415	+		GFF1738	0.81	-0.4
1,765,416	+		GFF1738	0.81	-0.8
1,765,423	-		GFF1738	0.82	+0.4
1,765,423	-		GFF1738	0.82	+0.3
1,765,436	-		GFF1738	0.84	-0.7
1,765,467	-		GFF1738	0.87	+0.3
1,765,482	-		GFF1738	0.89	-1.4
1,765,542	+				-1.9
1,765,552	+				-0.4
1,765,554	+				-0.7
1,765,554	+				+0.3
1,765,554	+				-0.6
1,765,562	+				-0.6
1,765,562	-				-0.3
1,765,689	-				+1.0
1,765,691	+		GFF1739	0.10	+0.1
1,765,692	+		GFF1739	0.11	+0.8
1,765,698	-		GFF1739	0.14	+0.9
1,765,700	-		GFF1739	0.15	+1.1
1,765,700	-		GFF1739	0.15	+0.5
1,765,700	-		GFF1739	0.15	-2.9
1,765,700	-		GFF1739	0.15	-2.2
1,765,752	-		GFF1739	0.46	-1.1
1,765,788	+		GFF1739	0.67	-0.9
1,765,793	+		GFF1739	0.70	+0.1
1,765,801	-		GFF1739	0.74	+0.6
1,765,822	+		GFF1739	0.87	-0.7
1,765,822	+		GFF1739	0.87	-0.1
1,765,822	+		GFF1739	0.87	-1.0
1,765,822	+		GFF1739	0.87	-0.5
1,765,822	+		GFF1739	0.87	+0.6
1,765,822	+		GFF1739	0.87	-1.0
1,765,822	+		GFF1739	0.87	+0.1
1,765,830	-				-1.3
1,765,830	-				-0.8
1,765,830	-				+0.0
1,765,830	-				+0.4
1,765,830	-				+0.7
1,765,830	-				+0.8
1,765,833	+				+0.5
1,765,833	+				-0.3
1,765,833	+				+0.0
1,765,838	+				-1.3
1,765,840	-				-0.3
1,765,841	-				-0.4
1,765,841	-				+0.1
1,765,846	-				-0.2
1,765,846	-				-0.1
1,765,846	-				+0.7
1,765,851	+				+0.3
1,765,854	-				-1.7
1,765,856	+				-0.6
1,765,859	-				-2.2
1,765,859	-				+0.4
1,765,860	-				+1.1
1,765,861	+				-1.7
1,765,870	-				-0.1
1,765,890	+				-1.7
1,765,898	-				+0.7
1,765,912	-				-0.2
1,765,914	+				-0.4
1,765,922	-				+0.9
1,765,927	-				-1.4
1,765,928	+				+0.0
1,765,932	+				-1.8
1,765,949	+				+0.7
1,765,964	-				-0.3
1,765,996	+				-1.3
1,765,997	+				-1.0
1,765,997	+				-0.2
1,765,998	-				+0.2
1,766,005	-				+0.3
1,766,005	-				-0.6
1,766,015	-				-1.0
1,766,021	-				+0.4
1,766,034	+				+0.1
1,766,065	+		GFF1740	0.11	-0.0
1,766,065	+		GFF1740	0.11	-0.3
1,766,070	+		GFF1740	0.11	+0.4
1,766,070	+		GFF1740	0.11	-0.2
1,766,070	+		GFF1740	0.11	-0.5
1,766,070	+		GFF1740	0.11	+0.4
1,766,070	+		GFF1740	0.11	+0.9
1,766,078	-		GFF1740	0.12	+0.4
1,766,078	-		GFF1740	0.12	-0.2
1,766,080	-		GFF1740	0.12	-0.8
1,766,093	+		GFF1740	0.13	-0.4
1,766,104	+		GFF1740	0.14	-1.3
1,766,119	-		GFF1740	0.15	+0.6
1,766,152	+		GFF1740	0.17	+0.3
1,766,154	+		GFF1740	0.17	+0.0
1,766,177	+		GFF1740	0.18	-0.8
1,766,183	-		GFF1740	0.19	+1.2
1,766,190	-		GFF1740	0.19	-0.4
1,766,222	+		GFF1740	0.21	+0.2
1,766,222	+		GFF1740	0.21	-2.1
1,766,222	+		GFF1740	0.21	+1.3
1,766,239	+		GFF1740	0.22	+0.4
1,766,251	-		GFF1740	0.23	-1.4
1,766,261	-		GFF1740	0.24	-0.1
1,766,298	+		GFF1740	0.26	-1.1
1,766,306	-		GFF1740	0.27	-2.3
1,766,326	+		GFF1740	0.28	-0.8
1,766,334	-		GFF1740	0.28	+0.4
1,766,339	+		GFF1740	0.29	+0.0
1,766,347	-		GFF1740	0.29	+0.0
1,766,347	-		GFF1740	0.29	-2.7
1,766,349	+		GFF1740	0.29	-0.1
1,766,370	+		GFF1740	0.31	-0.4
1,766,370	+		GFF1740	0.31	+1.5
1,766,405	+		GFF1740	0.33	-0.9
1,766,411	-		GFF1740	0.33	+1.0
1,766,413	-		GFF1740	0.33	+1.2
1,766,413	-		GFF1740	0.33	+0.5
1,766,489	-		GFF1740	0.38	-0.5
1,766,522	+		GFF1740	0.40	+1.0
1,766,522	+		GFF1740	0.40	-0.7
1,766,522	+		GFF1740	0.40	-0.6
1,766,525	-		GFF1740	0.41	+0.7
1,766,525	-		GFF1740	0.41	-0.6
1,766,527	+		GFF1740	0.41	-0.4
1,766,530	-		GFF1740	0.41	+1.4
1,766,538	-		GFF1740	0.41	-1.9
1,766,540	+		GFF1740	0.42	+0.3
1,766,545	+		GFF1740	0.42	+0.7
1,766,545	+		GFF1740	0.42	+0.9
1,766,545	+		GFF1740	0.42	+0.6
1,766,550	+		GFF1740	0.42	+0.3
1,766,551	+		GFF1740	0.42	+0.3
1,766,552	-		GFF1740	0.42	-1.5
1,766,564	+		GFF1740	0.43	+0.3
1,766,564	+		GFF1740	0.43	-0.9
1,766,564	+		GFF1740	0.43	-1.2
1,766,572	-		GFF1740	0.44	-2.0
1,766,599	+		GFF1740	0.45	+1.0
1,766,605	-		GFF1740	0.46	-0.5
1,766,620	+		GFF1740	0.47	+0.3
1,766,627	+		GFF1740	0.47	-2.5
1,766,627	+		GFF1740	0.47	-0.9
1,766,627	+		GFF1740	0.47	-0.2
1,766,635	-		GFF1740	0.48	-0.2
1,766,635	-		GFF1740	0.48	+0.1
1,766,635	-		GFF1740	0.48	+0.3
1,766,635	-		GFF1740	0.48	-2.7
1,766,638	+		GFF1740	0.48	+0.5
1,766,640	+		GFF1740	0.48	+0.6
1,766,640	+		GFF1740	0.48	+0.8
1,766,640	+		GFF1740	0.48	+0.2
1,766,645	+		GFF1740	0.48	-0.6
1,766,645	+		GFF1740	0.48	-0.9
1,766,645	+		GFF1740	0.48	-0.1
1,766,648	-		GFF1740	0.48	+0.0
1,766,648	-		GFF1740	0.48	+1.1
1,766,648	-		GFF1740	0.48	-0.4
1,766,648	-		GFF1740	0.48	-0.7
1,766,648	-		GFF1740	0.48	-2.4
1,766,648	-		GFF1740	0.48	+0.5
1,766,648	-		GFF1740	0.48	+0.1
1,766,648	-		GFF1740	0.48	-0.3
1,766,653	-		GFF1740	0.49	-0.4
1,766,653	-		GFF1740	0.49	+1.3
1,766,653	-		GFF1740	0.49	+0.6
1,766,653	-		GFF1740	0.49	+0.3
1,766,653	-		GFF1740	0.49	-1.3
1,766,653	-		GFF1740	0.49	+1.0
1,766,653	-		GFF1740	0.49	-1.1
1,766,655	+		GFF1740	0.49	-0.3
1,766,656	-		GFF1740	0.49	+0.3
1,766,660	+		GFF1740	0.49	+0.8
1,766,660	-		GFF1740	0.49	-0.7
1,766,662	+		GFF1740	0.49	+0.4
1,766,662	+		GFF1740	0.49	+0.4
1,766,670	-		GFF1740	0.50	-0.9
1,766,670	-		GFF1740	0.50	-2.1
1,766,670	-		GFF1740	0.50	-1.1
1,766,688	+		GFF1740	0.51	+0.3
1,766,714	+		GFF1740	0.53	+0.1
1,766,714	+		GFF1740	0.53	-0.5
1,766,714	+		GFF1740	0.53	-1.2
1,766,717	-		GFF1740	0.53	-1.4
1,766,717	-		GFF1740	0.53	+1.0
1,766,719	+		GFF1740	0.53	+1.5
1,766,726	-		GFF1740	0.53	-0.1
1,766,732	+		GFF1740	0.54	-1.3
1,766,740	-		GFF1740	0.54	-0.8
1,766,740	-		GFF1740	0.54	+0.9
1,766,785	-		GFF1740	0.57	-0.3
1,766,810	+		GFF1740	0.59	-0.4
1,766,810	+		GFF1740	0.59	+1.4
1,766,810	+		GFF1740	0.59	-0.3
1,766,810	+		GFF1740	0.59	-0.7
1,766,818	-		GFF1740	0.59	-1.2
1,766,818	-		GFF1740	0.59	+1.0
1,766,818	-		GFF1740	0.59	+0.3
1,766,818	-		GFF1740	0.59	-0.4
1,766,818	-		GFF1740	0.59	-2.0
1,766,818	-		GFF1740	0.59	+1.8
1,766,825	+		GFF1740	0.60	-0.9