Strain Fitness in Sphingobium sp. HT1-2 around GFF1700

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,725,843	+		GFF1697	0.81	+0.0
1,725,843	+		GFF1697	0.81	-0.1
1,725,843	+		GFF1697	0.81	+0.2
1,725,857	-		GFF1697	0.82	+0.2
1,725,909	-		GFF1697	0.86	+1.0
1,726,006	+				+0.7
1,726,016	-				+0.7
1,726,025	-				+0.4
1,726,168	+				+1.3
1,726,175	+				-1.1
1,726,186	-				-1.4
1,726,186	-				+1.2
1,726,207	-				-0.4
1,726,265	-				+1.1
1,726,267	-				-1.3
1,726,272	-				+1.1
1,726,311	-		GFF1698	0.31	+0.5
1,726,352	+		GFF1698	0.54	+1.2
1,726,396	+		GFF1698	0.79	-1.9
1,726,426	+				-0.1
1,726,429	-				+0.3
1,726,435	-				+1.3
1,726,451	-				+0.7
1,726,496	-		GFF1699	0.23	-0.2
1,726,498	+		GFF1699	0.24	+0.7
1,726,498	+		GFF1699	0.24	+0.7
1,726,498	+		GFF1699	0.24	-0.3
1,726,498	+		GFF1699	0.24	-0.4
1,726,506	-		GFF1699	0.27	-0.3
1,726,514	+		GFF1699	0.30	+0.0
1,726,577	-		GFF1699	0.53	-0.5
1,726,604	+		GFF1699	0.63	+0.1
1,726,617	+		GFF1699	0.68	-0.3
1,726,673	-		GFF1699	0.88	-0.3
1,726,706	-				-0.5
1,726,744	-				-1.2
1,726,746	+				-1.5
1,726,775	+				+0.5
1,726,775	+				-0.5
1,726,775	+				+1.4
1,726,775	+				-1.6
1,726,775	+				+0.7
1,726,775	+				+0.5
1,726,775	+				-0.6
1,726,775	+				+1.9
1,726,775	+				-0.6
1,726,775	+				-1.1
1,726,775	+				-0.7
1,726,775	+				-0.2
1,726,775	+				-0.2
1,726,783	-				+1.2
1,726,783	-				+1.1
1,726,783	-				-2.3
1,726,783	-				+1.4
1,726,783	-				-0.6
1,726,783	-				+0.5
1,726,783	-				-0.5
1,726,783	-				+0.4
1,726,783	-				+0.3
1,726,783	-				-0.4
1,726,783	-				-0.8
1,726,783	-				-1.3
1,726,839	+				-1.0
1,726,839	+				+1.1
1,726,839	+				-0.2
1,726,839	+				+0.9
1,726,839	+				+0.5
1,726,839	+				+1.7
1,726,839	+				+0.5
1,726,839	+				-0.4
1,726,839	+				-0.5
1,726,841	-				-0.6
1,726,847	-				+0.5
1,726,847	-				+0.3
1,726,847	-				+0.1
1,726,847	-				+0.2
1,726,877	+				-0.8
1,726,897	-				+0.8
1,726,990	+		GFF1700	0.12	+0.0
1,726,998	+		GFF1700	0.13	-0.9
1,727,000	+		GFF1700	0.13	+0.3
1,727,019	+		GFF1700	0.15	-1.4
1,727,019	+		GFF1700	0.15	+0.8
1,727,074	+		GFF1700	0.20	+0.9
1,727,082	+		GFF1700	0.20	+0.7
1,727,120	-		GFF1700	0.23	-0.4
1,727,127	+		GFF1700	0.24	+0.1
1,727,135	-		GFF1700	0.25	+0.6
1,727,135	-		GFF1700	0.25	+0.0
1,727,157	+		GFF1700	0.27	+1.8
1,727,157	+		GFF1700	0.27	+0.7
1,727,165	-		GFF1700	0.27	-0.7
1,727,238	+		GFF1700	0.33	+0.7
1,727,256	+		GFF1700	0.35	+1.2
1,727,256	+		GFF1700	0.35	+0.1
1,727,264	-		GFF1700	0.36	+0.6
1,727,265	-		GFF1700	0.36	-1.0
1,727,266	-		GFF1700	0.36	-0.1
1,727,276	-		GFF1700	0.37	-0.8
1,727,281	+		GFF1700	0.37	+0.4
1,727,299	-		GFF1700	0.39	-1.4
1,727,305	+		GFF1700	0.39	+0.6
1,727,305	+		GFF1700	0.39	+0.2
1,727,313	-		GFF1700	0.40	-0.9
1,727,315	+		GFF1700	0.40	+0.0
1,727,315	+		GFF1700	0.40	-0.2
1,727,323	-		GFF1700	0.41	+0.5
1,727,323	-		GFF1700	0.41	-1.0
1,727,371	+		GFF1700	0.45	-0.3
1,727,371	-		GFF1700	0.45	-1.7
1,727,377	-		GFF1700	0.45	+0.4
1,727,396	-		GFF1700	0.47	-0.5
1,727,404	+		GFF1700	0.47	-0.3
1,727,404	+		GFF1700	0.47	-0.2
1,727,404	+		GFF1700	0.47	-1.2
1,727,408	-		GFF1700	0.48	+1.4
1,727,412	-		GFF1700	0.48	-1.0
1,727,414	+		GFF1700	0.48	+0.2
1,727,414	+		GFF1700	0.48	+0.4
1,727,422	-		GFF1700	0.49	-0.1
1,727,429	+		GFF1700	0.50	-0.2
1,727,429	+		GFF1700	0.50	+0.8
1,727,437	+		GFF1700	0.50	+0.3
1,727,437	-		GFF1700	0.50	+1.6
1,727,437	-		GFF1700	0.50	-0.4
1,727,437	-		GFF1700	0.50	-0.0
1,727,437	-		GFF1700	0.50	-1.2
1,727,447	-		GFF1700	0.51	+0.0
1,727,478	-		GFF1700	0.54	+1.9
1,727,498	+		GFF1700	0.55	-0.3
1,727,498	-		GFF1700	0.55	+0.6
1,727,506	-		GFF1700	0.56	+0.8
1,727,506	-		GFF1700	0.56	+0.7
1,727,506	-		GFF1700	0.56	+1.6
1,727,506	-		GFF1700	0.56	-0.4
1,727,506	-		GFF1700	0.56	-1.4
1,727,520	+		GFF1700	0.57	-0.5
1,727,528	-		GFF1700	0.58	-0.1
1,727,528	-		GFF1700	0.58	+0.2
1,727,528	-		GFF1700	0.58	-0.2
1,727,528	-		GFF1700	0.58	+0.7
1,727,533	-		GFF1700	0.58	-0.2
1,727,542	+		GFF1700	0.59	+1.1
1,727,542	+		GFF1700	0.59	-0.9
1,727,542	+		GFF1700	0.59	-0.7
1,727,578	+		GFF1700	0.62	-1.7
1,727,586	-		GFF1700	0.63	-0.4
1,727,602	+		GFF1700	0.64	+0.6
1,727,602	+		GFF1700	0.64	+0.3
1,727,610	-		GFF1700	0.65	-0.9
1,727,645	-		GFF1700	0.68	+1.1
1,727,658	+		GFF1700	0.69	+1.5
1,727,662	+		GFF1700	0.69	+0.1
1,727,690	-		GFF1700	0.72	-0.1
1,727,700	-		GFF1700	0.72	-0.4
1,727,700	-		GFF1700	0.72	-1.0
1,727,701	-		GFF1700	0.72	-1.2
1,727,824	+		GFF1700	0.83	-0.5
1,727,824	+		GFF1700	0.83	-0.4
1,727,824	-		GFF1700	0.83	+0.0
1,727,871	+		GFF1700	0.87	+1.0
1,727,884	-		GFF1700	0.88	+0.5
1,727,955	+				-0.3
1,727,957	+				-0.8
1,728,015	-				+0.9
1,728,032	+				+0.4
1,728,060	+				-0.1
1,728,103	+				-1.6
1,728,113	-				+0.5
1,728,191	-		GFF1701	0.25	+0.1
1,728,236	-		GFF1701	0.45	+0.2
1,728,251	-		GFF1701	0.52	+0.7
1,728,255	+		GFF1701	0.54	-1.4
1,728,263	-		GFF1701	0.58	+0.8
1,728,269	+		GFF1701	0.61	+0.3
1,728,286	-		GFF1701	0.69	+0.9
1,728,297	-		GFF1701	0.74	-0.3
1,728,303	-		GFF1701	0.76	-1.6
1,728,303	-		GFF1701	0.76	-0.1
1,728,314	+		GFF1701	0.81	+0.4
1,728,365	-				-0.0
1,728,384	+				-2.3
1,728,404	+				-0.4
1,728,404	+				+0.2
1,728,436	+				-0.4
1,728,436	+				+0.1
1,728,451	-				+2.0
1,728,486	+		GFF1702	0.13	-1.8
1,728,495	+		GFF1702	0.14	-0.2
1,728,557	-		GFF1702	0.23	-0.1
1,728,565	+		GFF1702	0.24	+1.3
1,728,588	+		GFF1702	0.28	-0.4
1,728,589	+		GFF1702	0.28	+0.6
1,728,589	+		GFF1702	0.28	-2.3
1,728,589	+		GFF1702	0.28	+0.2
1,728,596	-		GFF1702	0.29	-0.2
1,728,597	-		GFF1702	0.29	+1.1
1,728,597	-		GFF1702	0.29	-0.4
1,728,597	-		GFF1702	0.29	-1.1
1,728,597	-		GFF1702	0.29	+0.1
1,728,607	+		GFF1702	0.30	+0.2
1,728,644	-		GFF1702	0.36	-1.1
1,728,711	-		GFF1702	0.46	-0.6
1,728,722	+		GFF1702	0.47	-0.4
1,728,722	+		GFF1702	0.47	-0.8
1,728,730	-		GFF1702	0.49	+1.3
1,728,766	-		GFF1702	0.54	+0.3
1,728,773	-		GFF1702	0.55	+0.3
1,728,775	+		GFF1702	0.55	+0.2
1,728,775	+		GFF1702	0.55	+0.5
1,728,775	+		GFF1702	0.55	+0.5
1,728,775	+		GFF1702	0.55	+2.4
1,728,783	-		GFF1702	0.56	-1.0
1,728,783	-		GFF1702	0.56	+0.0
1,728,802	-		GFF1702	0.59	+1.9
1,728,831	-		GFF1702	0.63	-0.2
1,728,868	+		GFF1702	0.69	+0.6
1,728,868	+		GFF1702	0.69	+0.4
1,728,889	-		GFF1702	0.72	+0.4
1,728,892	+		GFF1702	0.72	+0.1
1,728,912	-		GFF1702	0.75	-1.2
1,728,922	+		GFF1702	0.77	-0.2
1,728,930	-		GFF1702	0.78	-0.4
1,728,940	-		GFF1702	0.79	-0.2
1,728,950	+		GFF1702	0.81	-0.5
1,728,956	+		GFF1702	0.82	+0.0
1,728,966	+		GFF1702	0.83	-0.2
1,728,968	+		GFF1702	0.84	-0.8
1,728,968	+		GFF1702	0.84	-0.3
1,728,974	-		GFF1702	0.85	-0.3
1,728,974	-		GFF1702	0.85	+0.7
1,728,974	-		GFF1702	0.85	-0.2
1,728,974	-		GFF1702	0.85	-0.1
1,728,974	-		GFF1702	0.85	+0.3
1,728,974	-		GFF1702	0.85	-1.0
1,728,976	+		GFF1702	0.85	+0.3