Strain Fitness in Sphingobium sp. HT1-2 around GFF1699

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,725,454	+		GFF1697	0.47	-2.7
1,725,552	+		GFF1697	0.55	-0.6
1,725,566	-		GFF1697	0.56	+1.7
1,725,600	+		GFF1697	0.59	-0.1
1,725,620	+		GFF1697	0.61	-0.5
1,725,630	+		GFF1697	0.62	-0.9
1,725,726	+		GFF1697	0.70	+0.5
1,725,726	+		GFF1697	0.70	-0.0
1,725,794	-		GFF1697	0.76	-0.9
1,725,804	-		GFF1697	0.77	+0.5
1,725,807	+		GFF1697	0.77	-0.4
1,725,816	-		GFF1697	0.78	-1.4
1,725,833	-		GFF1697	0.80	-0.1
1,725,843	+		GFF1697	0.81	-0.1
1,725,843	+		GFF1697	0.81	-0.3
1,725,843	+		GFF1697	0.81	+0.1
1,725,857	-		GFF1697	0.82	+0.0
1,725,980	-				-1.2
1,725,980	-				+0.6
1,726,016	-				+0.6
1,726,025	-				+0.2
1,726,025	-				+0.4
1,726,025	-				-2.5
1,726,113	+				-0.4
1,726,168	+				+1.1
1,726,175	+				-1.3
1,726,176	-				+0.8
1,726,186	+				+0.2
1,726,186	-				-1.6
1,726,186	-				+1.0
1,726,186	-				-0.8
1,726,207	-				-0.6
1,726,244	-				+2.1
1,726,257	+				+1.1
1,726,263	+				+0.9
1,726,264	+				-0.3
1,726,265	-				+0.4
1,726,265	-				+1.0
1,726,267	-				-1.5
1,726,269	+				+0.4
1,726,293	+		GFF1698	0.21	+0.7
1,726,310	+		GFF1698	0.31	-0.1
1,726,311	-		GFF1698	0.31	+0.3
1,726,319	+		GFF1698	0.36	+0.2
1,726,345	-		GFF1698	0.50	+0.8
1,726,345	-		GFF1698	0.50	-0.3
1,726,345	-		GFF1698	0.50	+0.1
1,726,396	+		GFF1698	0.79	-2.0
1,726,404	-		GFF1698	0.84	-1.3
1,726,404	-		GFF1698	0.84	-1.2
1,726,406	+		GFF1698	0.85	-0.6
1,726,426	+				-0.3
1,726,427	+				-0.2
1,726,435	-				-0.8
1,726,435	-				+1.1
1,726,451	-				+0.5
1,726,477	-		GFF1699	0.16	+0.1
1,726,496	-		GFF1699	0.23	-0.7
1,726,496	-		GFF1699	0.23	-0.3
1,726,496	-		GFF1699	0.23	+2.4
1,726,498	+		GFF1699	0.24	+0.2
1,726,498	+		GFF1699	0.24	+0.7
1,726,498	+		GFF1699	0.24	+0.6
1,726,498	+		GFF1699	0.24	+0.6
1,726,498	+		GFF1699	0.24	-0.5
1,726,498	+		GFF1699	0.24	-0.6
1,726,506	-		GFF1699	0.27	+0.4
1,726,506	-		GFF1699	0.27	-0.4
1,726,506	-		GFF1699	0.27	-0.4
1,726,514	+		GFF1699	0.30	-0.1
1,726,529	-		GFF1699	0.36	-0.9
1,726,535	-		GFF1699	0.38	+0.2
1,726,570	+		GFF1699	0.51	-0.8
1,726,577	-		GFF1699	0.53	-0.8
1,726,577	-		GFF1699	0.53	-0.7
1,726,604	+		GFF1699	0.63	-0.0
1,726,617	+		GFF1699	0.68	-0.5
1,726,620	-		GFF1699	0.69	+0.5
1,726,673	-		GFF1699	0.88	-0.5
1,726,706	-				-0.6
1,726,706	-				-0.7
1,726,739	+				-0.8
1,726,739	+				-1.6
1,726,744	-				-1.3
1,726,746	+				-1.6
1,726,747	-				+0.8
1,726,775	+				-1.0
1,726,775	+				+0.3
1,726,775	+				-0.3
1,726,775	+				-0.7
1,726,775	+				-0.6
1,726,775	+				-1.8
1,726,775	+				+0.6
1,726,775	+				+0.4
1,726,775	+				-0.8
1,726,775	+				-1.3
1,726,775	+				-1.1
1,726,775	+				-2.1
1,726,775	+				-0.5
1,726,775	+				-0.1
1,726,775	+				-0.9
1,726,775	+				+1.2
1,726,775	+				-0.3
1,726,775	+				-0.3
1,726,781	+				-1.0
1,726,783	-				+1.0
1,726,783	-				-1.0
1,726,783	-				-0.5
1,726,783	-				-0.7
1,726,783	-				+0.7
1,726,783	-				+0.9
1,726,783	-				-2.2
1,726,783	-				-0.2
1,726,783	-				-2.5
1,726,783	-				-2.1
1,726,783	-				-0.8
1,726,783	-				+1.2
1,726,783	-				+0.3
1,726,783	-				+0.9
1,726,783	-				-0.7
1,726,783	-				+1.4
1,726,783	-				+0.2
1,726,783	-				+0.1
1,726,783	-				-0.6
1,726,783	-				-0.4
1,726,783	-				-1.0
1,726,783	-				-1.0
1,726,783	-				-1.5
1,726,783	-				-0.2
1,726,783	-				-0.3
1,726,803	-				-0.9
1,726,826	-				-0.5
1,726,828	+				-1.8
1,726,834	+				-0.5
1,726,839	+				-1.1
1,726,839	+				+1.0
1,726,839	+				-0.4
1,726,839	+				+0.8
1,726,839	+				+0.0
1,726,839	+				+0.3
1,726,839	+				+1.6
1,726,839	+				+0.3
1,726,839	+				-0.5
1,726,839	+				-0.7
1,726,841	-				-0.8
1,726,847	-				-1.5
1,726,847	-				+0.3
1,726,847	-				+0.2
1,726,847	-				-1.2
1,726,847	-				-0.1
1,726,847	-				+0.1
1,726,847	-				+0.2
1,726,847	-				+1.6
1,726,847	-				+0.1
1,726,852	-				+0.3
1,726,877	+				-1.0
1,726,877	+				-0.2
1,726,885	-				-0.7
1,726,897	-				+0.7
1,726,928	-				+0.7
1,726,990	+		GFF1700	0.12	-0.1
1,726,990	+		GFF1700	0.12	-0.3
1,726,998	+		GFF1700	0.13	-1.0
1,727,000	+		GFF1700	0.13	+0.1
1,727,018	+		GFF1700	0.15	-0.7
1,727,019	+		GFF1700	0.15	-0.9
1,727,019	+		GFF1700	0.15	-1.5
1,727,019	+		GFF1700	0.15	+0.7
1,727,026	-		GFF1700	0.16	-0.5
1,727,074	+		GFF1700	0.20	+0.8
1,727,079	+		GFF1700	0.20	-0.2
1,727,082	+		GFF1700	0.20	+0.5
1,727,112	+		GFF1700	0.23	-2.9
1,727,120	-		GFF1700	0.23	-0.5
1,727,120	-		GFF1700	0.23	+0.6
1,727,127	+		GFF1700	0.24	+1.4
1,727,127	+		GFF1700	0.24	-0.1
1,727,127	+		GFF1700	0.24	-0.6
1,727,135	-		GFF1700	0.25	+0.4
1,727,135	-		GFF1700	0.25	+0.9
1,727,135	-		GFF1700	0.25	-0.1
1,727,135	-		GFF1700	0.25	-1.5
1,727,157	+		GFF1700	0.27	+0.5
1,727,165	-		GFF1700	0.27	-0.8
1,727,167	+		GFF1700	0.27	-0.2
1,727,175	-		GFF1700	0.28	-0.6
1,727,195	-		GFF1700	0.30	-1.8
1,727,210	+		GFF1700	0.31	-0.5
1,727,238	+		GFF1700	0.33	+0.6
1,727,245	-		GFF1700	0.34	-0.4
1,727,256	+		GFF1700	0.35	-0.4
1,727,256	+		GFF1700	0.35	+1.0
1,727,256	+		GFF1700	0.35	-0.0
1,727,256	+		GFF1700	0.35	+0.2
1,727,258	+		GFF1700	0.35	-1.8
1,727,264	-		GFF1700	0.36	+0.4
1,727,265	-		GFF1700	0.36	-1.2
1,727,266	-		GFF1700	0.36	-0.2
1,727,266	-		GFF1700	0.36	-0.3
1,727,269	+		GFF1700	0.36	-1.1
1,727,281	+		GFF1700	0.37	+0.2
1,727,291	+		GFF1700	0.38	-0.6
1,727,299	-		GFF1700	0.39	-1.6
1,727,299	-		GFF1700	0.39	+0.0
1,727,305	+		GFF1700	0.39	+0.5
1,727,305	+		GFF1700	0.39	+0.1
1,727,313	-		GFF1700	0.40	-1.1
1,727,315	+		GFF1700	0.40	-0.1
1,727,315	+		GFF1700	0.40	-1.7
1,727,315	+		GFF1700	0.40	-0.3
1,727,323	-		GFF1700	0.41	+0.3
1,727,323	-		GFF1700	0.41	-1.2
1,727,333	-		GFF1700	0.41	-1.4
1,727,371	+		GFF1700	0.45	-0.5
1,727,371	-		GFF1700	0.45	-1.9
1,727,373	+		GFF1700	0.45	-0.2
1,727,377	-		GFF1700	0.45	+0.2
1,727,379	-		GFF1700	0.45	-1.3
1,727,381	-		GFF1700	0.45	+0.4
1,727,396	-		GFF1700	0.47	-0.7
1,727,404	+		GFF1700	0.47	-0.5
1,727,404	+		GFF1700	0.47	-0.4
1,727,404	+		GFF1700	0.47	-1.3
1,727,412	-		GFF1700	0.48	-1.1
1,727,412	-		GFF1700	0.48	-1.1
1,727,414	+		GFF1700	0.48	+0.1
1,727,414	+		GFF1700	0.48	+0.2
1,727,414	+		GFF1700	0.48	-0.1
1,727,414	+		GFF1700	0.48	-1.1
1,727,419	+		GFF1700	0.49	+0.6
1,727,422	-		GFF1700	0.49	-0.3
1,727,427	-		GFF1700	0.49	-0.3
1,727,429	+		GFF1700	0.50	-0.4
1,727,429	+		GFF1700	0.50	+0.5
1,727,429	+		GFF1700	0.50	-1.1
1,727,429	+		GFF1700	0.50	+0.7
1,727,429	+		GFF1700	0.50	-1.5
1,727,437	+		GFF1700	0.50	+0.2
1,727,437	-		GFF1700	0.50	+1.4
1,727,437	-		GFF1700	0.50	-0.6
1,727,437	-		GFF1700	0.50	-0.6
1,727,437	-		GFF1700	0.50	-0.2
1,727,437	-		GFF1700	0.50	-1.4
1,727,437	-		GFF1700	0.50	-0.8
1,727,442	-		GFF1700	0.51	-0.8
1,727,445	-		GFF1700	0.51	-1.2
1,727,445	-		GFF1700	0.51	+0.6
1,727,445	-		GFF1700	0.51	+0.9
1,727,447	-		GFF1700	0.51	-0.1
1,727,478	-		GFF1700	0.54	+1.8
1,727,490	+		GFF1700	0.55	-0.9
1,727,498	+		GFF1700	0.55	-0.2
1,727,498	+		GFF1700	0.55	-0.5
1,727,498	+		GFF1700	0.55	+0.2
1,727,498	+		GFF1700	0.55	-0.5
1,727,498	-		GFF1700	0.55	+0.4
1,727,506	-		GFF1700	0.56	+0.7
1,727,506	-		GFF1700	0.56	+0.5
1,727,506	-		GFF1700	0.56	-0.6
1,727,506	-		GFF1700	0.56	-1.6
1,727,506	-		GFF1700	0.56	-1.3
1,727,520	+		GFF1700	0.57	-0.7
1,727,520	+		GFF1700	0.57	-1.1
1,727,520	+		GFF1700	0.57	-1.6
1,727,528	-		GFF1700	0.58	-0.3
1,727,528	-		GFF1700	0.58	+0.0
1,727,528	-		GFF1700	0.58	-0.4
1,727,528	-		GFF1700	0.58	-0.6
1,727,528	-		GFF1700	0.58	+0.6
1,727,542	+		GFF1700	0.59	+1.0
1,727,542	+		GFF1700	0.59	-1.0
1,727,542	+		GFF1700	0.59	-0.9
1,727,550	-		GFF1700	0.60	-0.0
1,727,567	-		GFF1700	0.61	-1.3
1,727,578	+		GFF1700	0.62	-1.8
1,727,586	-		GFF1700	0.63	-0.5
1,727,587	-		GFF1700	0.63	-0.3
1,727,602	+		GFF1700	0.64	+0.2
1,727,602	+		GFF1700	0.64	+1.5
1,727,604	+		GFF1700	0.64	-2.6
1,727,610	-		GFF1700	0.65	-1.1
1,727,610	-		GFF1700	0.65	-0.4
1,727,622	-		GFF1700	0.66	+0.4
1,727,622	-		GFF1700	0.66	-1.5
1,727,658	+		GFF1700	0.69	+1.4
1,727,668	-		GFF1700	0.70	-0.3
1,727,675	-		GFF1700	0.70	-2.2
1,727,690	-		GFF1700	0.72	-0.3
1,727,698	+		GFF1700	0.72	-1.2
1,727,700	-		GFF1700	0.72	-0.6
1,727,700	-		GFF1700	0.72	-1.1
1,727,701	-		GFF1700	0.72	-1.4