Strain Fitness in Sphingobium sp. HT1-2 around GFF1689

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,712,162	+				-0.8
1,712,162	-				-1.8
1,712,181	-				-1.3
1,712,245	-		GFF1686	0.22	-1.2
1,712,245	-		GFF1686	0.22	-0.0
1,712,250	-		GFF1686	0.23	-0.8
1,712,295	-		GFF1686	0.35	-1.0
1,712,301	-		GFF1686	0.37	-0.9
1,712,365	-		GFF1686	0.54	-0.9
1,712,399	+		GFF1686	0.63	-0.4
1,712,407	-		GFF1686	0.65	-2.6
1,712,407	-		GFF1686	0.65	+1.0
1,712,408	+		GFF1686	0.65	-1.6
1,712,417	+		GFF1686	0.67	-0.1
1,712,428	+		GFF1686	0.70	-2.7
1,712,431	-		GFF1686	0.71	-0.2
1,712,436	-		GFF1686	0.73	-0.3
1,712,449	+		GFF1686	0.76	+1.3
1,712,449	+		GFF1686	0.76	-0.1
1,712,451	-		GFF1686	0.77	-1.2
1,712,457	-		GFF1686	0.78	+0.5
1,712,479	-		GFF1686	0.84	-0.2
1,712,479	-		GFF1686	0.84	-1.8
1,712,481	+		GFF1686	0.85	-0.3
1,712,489	-		GFF1686	0.87	+0.9
1,712,506	+				-0.1
1,712,506	+				-0.2
1,712,514	-				-0.5
1,712,528	+				-1.3
1,712,538	-				+0.9
1,712,540	+				-0.9
1,712,543	-				-0.8
1,712,545	+				+0.1
1,712,549	+				+0.2
1,712,555	-				-0.4
1,712,596	+				+0.1
1,712,596	+				+0.2
1,712,596	+				-0.0
1,712,604	-				+0.4
1,712,604	-				-1.7
1,712,604	-				-0.6
1,712,609	-				-1.5
1,712,609	-				-1.9
1,712,609	-				+0.7
1,712,609	-				-2.3
1,712,609	-				-0.1
1,712,615	+				+0.4
1,712,618	+				+1.0
1,712,618	+				-1.1
1,712,618	+				+0.4
1,712,626	-				+1.0
1,712,626	-				-0.1
1,712,626	-				-0.7
1,712,636	-		GFF1687	0.13	+0.3
1,712,636	-		GFF1687	0.13	-0.9
1,712,642	+		GFF1687	0.15	+0.3
1,712,642	+		GFF1687	0.15	-2.0
1,712,650	-		GFF1687	0.19	-1.9
1,712,650	-		GFF1687	0.19	-0.2
1,712,658	+		GFF1687	0.22	-1.1
1,712,666	-		GFF1687	0.25	+0.2
1,712,671	-		GFF1687	0.27	+1.6
1,712,693	-		GFF1687	0.36	-0.2
1,712,693	-		GFF1687	0.36	+0.2
1,712,699	+		GFF1687	0.38	-1.6
1,712,707	-		GFF1687	0.41	+0.7
1,712,707	-		GFF1687	0.41	-1.0
1,712,707	-		GFF1687	0.41	-0.0
1,712,728	+		GFF1687	0.50	-0.7
1,712,728	+		GFF1687	0.50	+0.7
1,712,736	-		GFF1687	0.53	-1.5
1,712,741	-		GFF1687	0.55	-0.6
1,712,746	-		GFF1687	0.57	-0.1
1,712,792	+		GFF1687	0.75	-0.9
1,712,796	-		GFF1687	0.77	+1.0
1,712,800	-		GFF1687	0.78	+0.1
1,712,856	+				+0.1
1,712,866	+				-1.3
1,712,866	-				+0.3
1,712,903	+				-2.1
1,712,903	+				-1.3
1,712,903	+				+0.4
1,712,903	+				-0.1
1,712,908	+				+0.4
1,712,911	-				-1.5
1,712,916	-				+0.0
1,713,006	-		GFF1688	0.28	-1.0
1,713,016	-		GFF1688	0.34	+0.4
1,713,041	+		GFF1688	0.49	-0.6
1,713,052	+		GFF1688	0.56	-1.4
1,713,052	+		GFF1688	0.56	-0.2
1,713,052	+		GFF1688	0.56	-0.1
1,713,052	+		GFF1688	0.56	-0.3
1,713,060	-		GFF1688	0.61	-0.9
1,713,060	-		GFF1688	0.61	-0.5
1,713,060	-		GFF1688	0.61	+0.7
1,713,060	-		GFF1688	0.61	+0.0
1,713,060	-		GFF1688	0.61	+0.4
1,713,060	-		GFF1688	0.61	-1.4
1,713,063	+		GFF1688	0.62	+0.0
1,713,069	-		GFF1688	0.66	-1.2
1,713,069	-		GFF1688	0.66	+0.1
1,713,071	-		GFF1688	0.67	-0.1
1,713,071	-		GFF1688	0.67	-1.7
1,713,071	-		GFF1688	0.67	-0.4
1,713,071	-		GFF1688	0.67	-1.4
1,713,085	+		GFF1688	0.76	+0.2
1,713,091	+		GFF1688	0.79	+0.1
1,713,092	-		GFF1688	0.80	-0.0
1,713,093	-		GFF1688	0.81	-0.4
1,713,094	-		GFF1688	0.81	+0.5
1,713,104	+		GFF1688	0.87	-1.7
1,713,112	+				+0.7
1,713,117	+				-0.1
1,713,118	-				-0.2
1,713,125	-				+0.1
1,713,130	-				-0.1
1,713,143	-				-0.2
1,713,155	+				-0.7
1,713,167	-		GFF1689	0.12	+1.0
1,713,167	-		GFF1689	0.12	-1.2
1,713,179	+		GFF1689	0.21	-1.2
1,713,197	-		GFF1689	0.35	+0.7
1,713,212	+		GFF1689	0.47	+0.6
1,713,222	+		GFF1689	0.54	-1.0
1,713,230	-		GFF1689	0.60	+0.8
1,713,230	-		GFF1689	0.60	+0.1
1,713,232	+		GFF1689	0.62	-1.2
1,713,235	-		GFF1689	0.64	-0.3
1,713,244	+		GFF1689	0.71	+0.1
1,713,244	+		GFF1689	0.71	+0.0
1,713,244	+		GFF1689	0.71	-1.0
1,713,250	-		GFF1689	0.76	-0.3
1,713,252	-		GFF1689	0.78	-1.1
1,713,252	-		GFF1689	0.78	-1.3
1,713,252	-		GFF1689	0.78	+1.1
1,713,252	-		GFF1689	0.78	-1.5
1,713,252	-		GFF1689	0.78	-0.5
1,713,257	+		GFF1689	0.81	-1.1
1,713,275	-				-2.5
1,713,276	-				+0.4
1,713,281	-				+0.4
1,713,281	-				+1.2
1,713,287	-				+0.3
1,713,304	-				-0.9
1,713,304	-				+0.7
1,713,314	+				+0.4
1,713,334	+				-0.5
1,713,342	-				-2.0
1,713,344	-				-0.9
1,713,344	-				-0.8
1,713,359	-				+0.1
1,713,360	+				+1.7
1,713,365	+				+0.1
1,713,370	+				-1.0
1,713,370	+				-0.1
1,713,370	+				+0.5
1,713,370	+				-0.1
1,713,370	+				-1.7
1,713,370	+				+0.0
1,713,370	+				+0.9
1,713,370	+				-1.2
1,713,370	+				+1.5
1,713,370	+				+0.7
1,713,370	+				+0.1
1,713,370	+				-2.6
1,713,378	-				+0.4
1,713,378	-				-0.8
1,713,378	-				+0.0
1,713,378	-				+0.7
1,713,378	-				-1.1
1,713,380	-				-0.7
1,713,380	-				-0.4
1,713,401	-		GFF1690	0.11	-0.2
1,713,401	-		GFF1690	0.11	-1.0
1,713,444	-		GFF1690	0.15	-1.1
1,713,468	-		GFF1690	0.17	-0.2
1,713,484	+		GFF1690	0.18	+0.2
1,713,508	-		GFF1690	0.20	+0.7
1,713,508	-		GFF1690	0.20	+1.9
1,713,517	+		GFF1690	0.21	-0.8
1,713,579	+		GFF1690	0.27	-0.3
1,713,579	+		GFF1690	0.27	+0.6
1,713,587	-		GFF1690	0.27	+0.5
1,713,594	-		GFF1690	0.28	+1.1
1,713,604	-		GFF1690	0.29	-0.0
1,713,615	-		GFF1690	0.30	+0.0
1,713,623	+		GFF1690	0.31	+1.0
1,713,646	+		GFF1690	0.33	-0.2
1,713,646	+		GFF1690	0.33	+0.8
1,713,646	+		GFF1690	0.33	-0.3
1,713,646	+		GFF1690	0.33	-0.2
1,713,653	+		GFF1690	0.33	+0.3
1,713,653	-		GFF1690	0.33	-0.3
1,713,654	-		GFF1690	0.33	-3.3
1,713,654	-		GFF1690	0.33	-0.2
1,713,654	-		GFF1690	0.33	+1.3
1,713,658	-		GFF1690	0.34	-0.6
1,713,659	-		GFF1690	0.34	-0.6
1,713,663	+		GFF1690	0.34	+1.9
1,713,663	+		GFF1690	0.34	+0.7
1,713,666	-		GFF1690	0.35	+0.0
1,713,671	-		GFF1690	0.35	+0.5
1,713,671	-		GFF1690	0.35	+0.4
1,713,671	-		GFF1690	0.35	-1.9
1,713,671	-		GFF1690	0.35	-1.4
1,713,671	-		GFF1690	0.35	-0.7
1,713,671	-		GFF1690	0.35	+0.1
1,713,671	-		GFF1690	0.35	+1.1
1,713,695	+		GFF1690	0.37	-1.8
1,713,719	+		GFF1690	0.39	-0.2
1,713,725	+		GFF1690	0.40	-1.3
1,713,725	+		GFF1690	0.40	-0.3
1,713,725	+		GFF1690	0.40	+1.1
1,713,733	-		GFF1690	0.41	-1.2
1,713,733	-		GFF1690	0.41	+1.2
1,713,735	+		GFF1690	0.41	+1.1
1,713,735	+		GFF1690	0.41	+2.0
1,713,743	-		GFF1690	0.41	-0.1
1,713,744	-		GFF1690	0.42	-1.3
1,713,765	+		GFF1690	0.43	+0.5
1,713,808	-		GFF1690	0.47	+0.5
1,713,810	-		GFF1690	0.47	-1.7
1,713,822	+		GFF1690	0.49	+0.4
1,713,836	-		GFF1690	0.50	-0.5
1,713,846	+		GFF1690	0.51	+0.6
1,713,869	+		GFF1690	0.53	+0.9
1,713,877	-		GFF1690	0.54	+0.4
1,713,898	-		GFF1690	0.55	+0.4
1,713,907	-		GFF1690	0.56	+0.0
1,713,996	+		GFF1690	0.64	+0.6
1,714,044	+		GFF1690	0.69	+0.1
1,714,069	+		GFF1690	0.71	+0.7
1,714,093	+		GFF1690	0.73	+0.3
1,714,110	-		GFF1690	0.75	+0.4
1,714,148	+		GFF1690	0.78	-0.3
1,714,148	+		GFF1690	0.78	-0.6
1,714,148	+		GFF1690	0.78	+0.2
1,714,148	+		GFF1690	0.78	-0.9
1,714,148	+		GFF1690	0.78	+0.4
1,714,148	+		GFF1690	0.78	-0.0
1,714,148	+		GFF1690	0.78	+0.8
1,714,148	+		GFF1690	0.78	-1.0
1,714,148	+		GFF1690	0.78	-0.5
1,714,148	+		GFF1690	0.78	+1.0
1,714,148	+		GFF1690	0.78	-0.2
1,714,148	+		GFF1690	0.78	+0.4
1,714,148	+		GFF1690	0.78	-2.4
1,714,148	+		GFF1690	0.78	-2.2
1,714,148	+		GFF1690	0.78	+0.0
1,714,148	+		GFF1690	0.78	-1.6
1,714,148	+		GFF1690	0.78	+0.8
1,714,148	+		GFF1690	0.78	+0.2
1,714,148	+		GFF1690	0.78	-0.2
1,714,148	+		GFF1690	0.78	-0.5
1,714,156	-		GFF1690	0.79	-0.2
1,714,156	-		GFF1690	0.79	+0.4
1,714,156	-		GFF1690	0.79	-0.2
1,714,156	-		GFF1690	0.79	+0.1
1,714,156	-		GFF1690	0.79	+0.1
1,714,156	-		GFF1690	0.79	-0.4
1,714,156	-		GFF1690	0.79	+0.0
1,714,156	-		GFF1690	0.79	+0.8
1,714,156	-		GFF1690	0.79	-1.6
1,714,156	-		GFF1690	0.79	-1.0
1,714,156	-		GFF1690	0.79	+0.2
1,714,156	-		GFF1690	0.79	-0.6
1,714,156	-		GFF1690	0.79	+0.7
1,714,156	-		GFF1690	0.79	+0.3
1,714,156	-		GFF1690	0.79	+0.2
1,714,156	-		GFF1690	0.79	+0.7
1,714,156	-		GFF1690	0.79	+1.1
1,714,156	-		GFF1690	0.79	-0.6
1,714,156	-		GFF1690	0.79	+0.4
1,714,156	-		GFF1690	0.79	+0.3
1,714,156	-		GFF1690	0.79	-0.7
1,714,156	-		GFF1690	0.79	-0.6
1,714,156	-		GFF1690	0.79	-2.1
1,714,156	-		GFF1690	0.79	+0.5
1,714,156	-		GFF1690	0.79	-0.2
1,714,156	-		GFF1690	0.79	-1.3
1,714,156	-		GFF1690	0.79	+0.2
1,714,161	+		GFF1690	0.79	-0.3
1,714,180	+		GFF1690	0.81	-1.7
1,714,186	+		GFF1690	0.81	-0.4
1,714,188	-		GFF1690	0.82	-0.6
1,714,194	-		GFF1690	0.82	+0.9
1,714,194	-		GFF1690	0.82	-0.6
1,714,194	-		GFF1690	0.82	+1.6
1,714,197	+		GFF1690	0.82	+0.6
1,714,200	+		GFF1690	0.83	+0.1
1,714,200	+		GFF1690	0.83	+0.1
1,714,200	-		GFF1690	0.83	-0.3
1,714,200	-		GFF1690	0.83	-0.2
1,714,210	-		GFF1690	0.84	+0.7
1,714,258	+		GFF1690	0.88	-0.3