Strain Fitness in Sphingobium sp. HT1-2 around GFF1659

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,685,870	-		GFF1658	0.58	-1.2
1,685,870	-		GFF1658	0.58	+1.3
1,685,911	+		GFF1658	0.60	-1.2
1,685,919	-		GFF1658	0.60	+0.7
1,685,927	-		GFF1658	0.61	+0.6
1,685,934	+		GFF1658	0.61	-1.2
1,685,938	+		GFF1658	0.61	+0.8
1,685,938	+		GFF1658	0.61	-0.2
1,685,938	+		GFF1658	0.61	+1.2
1,685,942	-		GFF1658	0.61	+0.2
1,685,942	-		GFF1658	0.61	-0.7
1,685,942	-		GFF1658	0.61	+0.8
1,685,944	+		GFF1658	0.61	-0.2
1,685,944	+		GFF1658	0.61	+0.4
1,685,944	+		GFF1658	0.61	+0.5
1,685,946	-		GFF1658	0.61	-0.4
1,685,946	-		GFF1658	0.61	+1.0
1,685,952	-		GFF1658	0.62	-0.1
1,685,952	-		GFF1658	0.62	-0.4
1,685,952	-		GFF1658	0.62	+0.2
1,685,963	+		GFF1658	0.62	-0.1
1,685,964	+		GFF1658	0.62	-0.6
1,685,972	-		GFF1658	0.63	-2.0
1,685,978	-		GFF1658	0.63	-2.6
1,685,997	+		GFF1658	0.64	+0.8
1,686,002	+		GFF1658	0.64	-0.5
1,686,002	+		GFF1658	0.64	-0.1
1,686,005	-		GFF1658	0.64	+0.0
1,686,082	+		GFF1658	0.68	-0.9
1,686,100	-		GFF1658	0.69	-1.5
1,686,110	-		GFF1658	0.69	-0.7
1,686,118	-		GFF1658	0.70	+0.3
1,686,132	+		GFF1658	0.70	-1.1
1,686,132	+		GFF1658	0.70	-0.5
1,686,132	+		GFF1658	0.70	-0.2
1,686,139	-		GFF1658	0.71	-0.3
1,686,140	-		GFF1658	0.71	-0.1
1,686,140	-		GFF1658	0.71	+0.1
1,686,140	-		GFF1658	0.71	-0.2
1,686,161	-		GFF1658	0.72	+0.8
1,686,176	-		GFF1658	0.72	+0.4
1,686,221	-		GFF1658	0.74	+1.6
1,686,244	-		GFF1658	0.76	-0.6
1,686,245	+		GFF1658	0.76	-0.9
1,686,246	+		GFF1658	0.76	-0.3
1,686,255	-		GFF1658	0.76	+0.4
1,686,257	+		GFF1658	0.76	+1.2
1,686,257	+		GFF1658	0.76	-0.5
1,686,257	+		GFF1658	0.76	-0.4
1,686,258	+		GFF1658	0.76	+0.3
1,686,259	-		GFF1658	0.76	+1.0
1,686,263	+		GFF1658	0.76	-1.2
1,686,265	+		GFF1658	0.77	+0.7
1,686,266	-		GFF1658	0.77	-1.0
1,686,266	-		GFF1658	0.77	-0.1
1,686,285	+		GFF1658	0.77	+0.4
1,686,285	+		GFF1658	0.77	+0.5
1,686,285	+		GFF1658	0.77	+0.4
1,686,285	+		GFF1658	0.77	+0.2
1,686,285	+		GFF1658	0.77	-0.4
1,686,285	+		GFF1658	0.77	-1.4
1,686,285	+		GFF1658	0.77	-1.3
1,686,293	-		GFF1658	0.78	-1.7
1,686,293	-		GFF1658	0.78	+1.0
1,686,293	-		GFF1658	0.78	-1.1
1,686,293	-		GFF1658	0.78	-0.6
1,686,296	+		GFF1658	0.78	+1.1
1,686,304	-		GFF1658	0.78	-1.2
1,686,304	-		GFF1658	0.78	+0.1
1,686,319	+		GFF1658	0.79	-0.6
1,686,324	+		GFF1658	0.79	+0.9
1,686,324	+		GFF1658	0.79	+0.5
1,686,332	-		GFF1658	0.80	-1.2
1,686,332	-		GFF1658	0.80	-1.1
1,686,332	-		GFF1658	0.80	+0.7
1,686,332	-		GFF1658	0.80	-1.2
1,686,332	-		GFF1658	0.80	-0.1
1,686,332	-		GFF1658	0.80	-1.9
1,686,332	-		GFF1658	0.80	-1.3
1,686,332	-		GFF1658	0.80	+0.8
1,686,336	+		GFF1658	0.80	+1.0
1,686,339	+		GFF1658	0.80	+0.4
1,686,340	+		GFF1658	0.80	+0.6
1,686,345	-		GFF1658	0.80	-0.0
1,686,350	+		GFF1658	0.81	+0.9
1,686,354	-		GFF1658	0.81	+0.6
1,686,379	+		GFF1658	0.82	-1.2
1,686,409	+		GFF1658	0.83	-0.9
1,686,417	-		GFF1658	0.84	+0.7
1,686,461	+		GFF1658	0.86	-0.2
1,686,467	-		GFF1658	0.86	-1.2
1,686,467	-		GFF1658	0.86	-0.1
1,686,469	+		GFF1658	0.86	-0.5
1,686,509	+		GFF1658	0.88	+1.0
1,686,509	+		GFF1658	0.88	-1.6
1,686,528	+		GFF1658	0.89	-0.3
1,686,533	-		GFF1658	0.89	-1.4
1,686,536	-		GFF1658	0.89	+1.1
1,686,538	+		GFF1658	0.89	+0.2
1,686,550	+				-2.5
1,686,553	+				-0.6
1,686,569	-				+1.5
1,686,573	+				-0.7
1,686,596	+				-1.2
1,686,601	+				+1.2
1,686,611	+				+0.0
1,686,634	-				-0.7
1,686,642	-				-2.7
1,686,649	+				-0.1
1,686,683	-				+0.7
1,686,688	-				-0.9
1,686,694	+				+0.6
1,686,702	-				-0.9
1,686,712	+				-0.3
1,686,725	+				-0.8
1,686,725	-				+0.3
1,686,730	+				-0.2
1,686,733	-				+1.1
1,686,738	-				-1.7
1,686,748	-				+0.7
1,686,754	+				-0.9
1,686,762	-				+0.7
1,686,764	-				-0.6
1,686,772	-				+0.3
1,686,775	+				-1.6
1,686,778	+				+0.5
1,686,782	-				-0.2
1,686,786	+				-0.3
1,686,786	-				-0.1
1,686,787	+				+0.8
1,686,794	-				+0.2
1,686,794	-				-1.2
1,686,794	-				+0.5
1,686,794	-				-0.8
1,686,795	-				+0.8
1,686,795	-				+0.2
1,686,795	-				+0.1
1,686,795	-				+0.6
1,686,795	-				-0.8
1,686,795	-				+1.8
1,686,795	-				-1.2
1,686,847	-				-0.1
1,686,936	-				-1.1
1,687,003	+		GFF1659	0.16	-1.3
1,687,011	-		GFF1659	0.17	-0.2
1,687,025	-		GFF1659	0.18	-1.7
1,687,031	-		GFF1659	0.19	-0.5
1,687,045	+		GFF1659	0.20	-0.7
1,687,048	+		GFF1659	0.21	+0.9
1,687,053	-		GFF1659	0.21	-0.7
1,687,053	-		GFF1659	0.21	+0.3
1,687,056	-		GFF1659	0.21	+0.9
1,687,058	-		GFF1659	0.22	+0.2
1,687,067	+		GFF1659	0.23	+0.7
1,687,067	+		GFF1659	0.23	+0.1
1,687,075	-		GFF1659	0.23	+0.3
1,687,075	-		GFF1659	0.23	-0.8
1,687,075	-		GFF1659	0.23	+1.1
1,687,088	+		GFF1659	0.25	-0.7
1,687,088	+		GFF1659	0.25	-0.6
1,687,088	+		GFF1659	0.25	-0.2
1,687,096	-		GFF1659	0.26	-0.7
1,687,096	-		GFF1659	0.26	-1.7
1,687,107	-		GFF1659	0.27	-0.2
1,687,130	-		GFF1659	0.30	-0.6
1,687,145	+		GFF1659	0.31	+1.1
1,687,150	+		GFF1659	0.32	+0.5
1,687,155	+		GFF1659	0.32	+0.2
1,687,155	+		GFF1659	0.32	-0.3
1,687,155	+		GFF1659	0.32	-0.3
1,687,155	+		GFF1659	0.32	-0.3
1,687,155	+		GFF1659	0.32	-0.5
1,687,155	+		GFF1659	0.32	+0.2
1,687,163	-		GFF1659	0.33	+0.9
1,687,163	-		GFF1659	0.33	-1.2
1,687,163	-		GFF1659	0.33	-1.8
1,687,182	+		GFF1659	0.35	-0.4
1,687,182	+		GFF1659	0.35	-0.1
1,687,190	-		GFF1659	0.36	-0.6
1,687,190	-		GFF1659	0.36	+0.7
1,687,190	-		GFF1659	0.36	-1.8
1,687,197	-		GFF1659	0.37	-2.3
1,687,207	+		GFF1659	0.38	-0.3
1,687,220	-		GFF1659	0.39	-0.1
1,687,224	+		GFF1659	0.40	-2.1
1,687,224	+		GFF1659	0.40	-2.3
1,687,240	+		GFF1659	0.42	-1.3
1,687,245	+		GFF1659	0.42	-0.9
1,687,245	+		GFF1659	0.42	-0.7
1,687,245	+		GFF1659	0.42	+0.1
1,687,245	+		GFF1659	0.42	-1.9
1,687,245	+		GFF1659	0.42	+0.8
1,687,250	+		GFF1659	0.43	+0.7
1,687,253	-		GFF1659	0.43	-1.5
1,687,253	-		GFF1659	0.43	+0.6
1,687,253	-		GFF1659	0.43	+0.3
1,687,253	-		GFF1659	0.43	-0.3
1,687,255	+		GFF1659	0.43	-1.4
1,687,264	-		GFF1659	0.44	-0.1
1,687,266	+		GFF1659	0.44	-1.1
1,687,287	-		GFF1659	0.47	-0.8
1,687,334	+		GFF1659	0.52	-1.2
1,687,338	+		GFF1659	0.52	-0.4
1,687,353	-		GFF1659	0.54	+1.0
1,687,360	+		GFF1659	0.55	-1.8
1,687,360	+		GFF1659	0.55	+1.2
1,687,360	+		GFF1659	0.55	-1.5
1,687,367	+		GFF1659	0.55	+1.0
1,687,401	+		GFF1659	0.59	-0.3
1,687,401	+		GFF1659	0.59	-0.3
1,687,402	+		GFF1659	0.59	+0.9
1,687,409	-		GFF1659	0.60	-0.7
1,687,409	-		GFF1659	0.60	-0.2
1,687,410	-		GFF1659	0.60	+0.2
1,687,436	+		GFF1659	0.63	+0.2
1,687,436	+		GFF1659	0.63	+0.0
1,687,436	+		GFF1659	0.63	-0.3
1,687,436	+		GFF1659	0.63	+0.2
1,687,444	-		GFF1659	0.64	-0.9
1,687,444	-		GFF1659	0.64	-0.5
1,687,453	+		GFF1659	0.65	+0.7
1,687,458	+		GFF1659	0.65	-1.2
1,687,458	+		GFF1659	0.65	-1.2
1,687,466	-		GFF1659	0.66	-0.1
1,687,466	-		GFF1659	0.66	-1.1
1,687,466	-		GFF1659	0.66	-1.0
1,687,466	-		GFF1659	0.66	-0.7
1,687,470	-		GFF1659	0.67	-0.8
1,687,475	-		GFF1659	0.67	-0.0
1,687,493	-		GFF1659	0.69	+0.3
1,687,496	+		GFF1659	0.70	+0.2
1,687,499	-		GFF1659	0.70	+0.0
1,687,499	-		GFF1659	0.70	+1.0
1,687,499	-		GFF1659	0.70	-0.0
1,687,517	+		GFF1659	0.72	+0.1
1,687,525	-		GFF1659	0.73	+0.5
1,687,527	+		GFF1659	0.73	+0.3
1,687,527	+		GFF1659	0.73	-0.7
1,687,535	-		GFF1659	0.74	-0.7
1,687,537	+		GFF1659	0.74	+0.7
1,687,545	-		GFF1659	0.75	-0.8
1,687,545	-		GFF1659	0.75	-1.0
1,687,545	-		GFF1659	0.75	-1.5
1,687,558	+		GFF1659	0.76	+1.0
1,687,558	+		GFF1659	0.76	-1.1
1,687,558	+		GFF1659	0.76	+1.1
1,687,573	+		GFF1659	0.78	-0.5
1,687,581	-		GFF1659	0.79	+0.7
1,687,588	+		GFF1659	0.80	+0.2
1,687,588	+		GFF1659	0.80	+0.7
1,687,589	+		GFF1659	0.80	-0.2
1,687,592	-		GFF1659	0.80	-0.8
1,687,596	-		GFF1659	0.80	-0.5
1,687,596	-		GFF1659	0.80	-1.3
1,687,597	-		GFF1659	0.81	-0.7
1,687,597	-		GFF1659	0.81	+0.1
1,687,612	-		GFF1659	0.82	-0.6
1,687,612	-		GFF1659	0.82	-0.2
1,687,612	-		GFF1659	0.82	-0.5
1,687,613	-		GFF1659	0.82	+0.6
1,687,628	+		GFF1659	0.84	-0.7
1,687,628	-		GFF1659	0.84	+0.4
1,687,630	-		GFF1659	0.84	-0.9
1,687,636	-		GFF1659	0.85	+0.6
1,687,636	-		GFF1659	0.85	-1.6
1,687,653	-		GFF1659	0.87	-1.3
1,687,653	-		GFF1659	0.87	+0.6
1,687,653	-		GFF1659	0.87	-1.2
1,687,655	+		GFF1659	0.87	-0.8
1,687,663	+		GFF1659	0.88	-2.1
1,687,669	+		GFF1659	0.88	+0.4
1,687,669	+		GFF1659	0.88	-1.5
1,687,677	-		GFF1659	0.89	-0.5
1,687,677	-		GFF1659	0.89	-0.8
1,687,677	-		GFF1659	0.89	+0.6
1,687,692	-				-2.1
1,687,692	-				-1.3
1,687,726	-				-1.6
1,687,726	-				+0.7
1,687,728	-				-0.8
1,687,735	+				+0.7
1,687,758	+				-1.3
1,687,763	+				+0.3
1,687,763	+				+0.4
1,687,763	+				-1.5
1,687,763	+				+0.0
1,687,763	+				+0.7
1,687,766	-				-1.6
1,687,771	-				+0.3
1,687,771	-				+0.9
1,687,771	-				-1.2
1,687,771	-				+0.7
1,687,771	-				+0.1
1,687,773	+				-0.5
1,687,774	+				+0.7
1,687,774	+				-0.3
1,687,785	+				+1.5
1,687,786	+				+1.8
1,687,786	+				+0.7
1,687,786	+				+0.9
1,687,794	-				-2.1
1,687,807	+				+1.0
1,687,807	+				+0.7
1,687,807	+				+0.4
1,687,807	+				+0.4
1,687,807	+				-0.1
1,687,813	-				+0.7
1,687,815	-				+0.0
1,687,826	+				+0.2
1,687,826	+				+1.4
1,687,826	+				-0.2
1,687,826	+				+0.5
1,687,834	-				-0.1
1,687,834	-				-0.2
1,687,834	-				+0.9
1,687,834	-				+0.4
1,687,834	-				+0.8
1,687,834	-				-1.5
1,687,840	-				-1.7
1,687,842	+				+0.8
1,687,842	+				+0.8
1,687,855	+				-1.5
1,687,882	+				-2.2
1,687,887	+				-0.7
1,687,887	+				+0.8
1,687,895	-				-1.2
1,687,902	+				+1.0
1,687,902	+				+0.5
1,687,904	-				-1.3
1,687,905	-				-0.6
1,687,912	+				-0.7
1,687,912	+				+1.1
1,687,920	-				-0.2
1,687,920	-				-0.9
1,687,920	-				+0.5
1,687,946	-				-1.2
1,687,953	+				+0.6
1,687,970	+				+0.2
1,687,975	+				+1.8
1,687,975	+				+0.7
1,687,975	+				+0.4
1,687,975	+				+0.6
1,687,975	+				+1.1
1,687,975	+				+0.8
1,687,975	+				+0.8
1,687,975	+				-0.3
1,687,975	+				+1.4
1,687,975	+				+0.1
1,687,975	+				+1.1
1,687,975	+				+1.9
1,687,975	+				+0.5
1,687,975	+				+0.4
1,687,975	+				+0.6
1,687,975	+				-0.8
1,687,975	+				+0.7
1,687,975	+				-0.7
1,687,975	+				+0.3
1,687,975	+				+1.6
1,687,975	+				+1.2
1,687,975	+				+0.6
1,687,975	+				+0.7
1,687,975	+				+0.8
1,687,975	+				+0.7
1,687,975	+				-0.2
1,687,978	-				+0.9
1,687,983	-				+0.4
1,687,983	-				+0.0
1,687,983	-				+0.4
1,687,983	-				+1.0
1,687,983	-				-1.1
1,687,983	-				-0.5
1,687,983	-				-0.1
1,687,983	-				+0.1
1,687,983	-				+0.6
1,687,983	-				-1.3
1,687,983	-				+0.5
1,687,983	-				+0.2
1,687,983	-				-0.5
1,687,983	-				+0.5
1,687,988	-				-0.9
1,687,989	+				-1.0
1,687,999	+				+0.7
1,688,007	-				+0.9
1,688,067	+		GFF1660	0.12	+1.8
1,688,077	+		GFF1660	0.12	+0.8
1,688,077	+		GFF1660	0.12	-0.6
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