Strain Fitness in Sphingobium sp. HT1-2 around GFF1651

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,674,614	-				+1.3
1,674,675	+				-1.0
1,674,675	+				-0.4
1,674,786	-		GFF1648	0.41	-1.4
1,674,786	-		GFF1648	0.41	-0.7
1,674,802	+		GFF1648	0.46	+0.4
1,674,818	+		GFF1648	0.52	+0.1
1,674,833	+		GFF1648	0.57	+1.1
1,674,841	-		GFF1648	0.59	+1.7
1,674,847	-		GFF1648	0.62	+0.1
1,674,872	-		GFF1648	0.70	-1.1
1,674,903	+		GFF1648	0.81	+0.0
1,674,965	-				+1.3
1,674,973	-				-0.5
1,674,992	+				+1.1
1,674,992	+				+0.2
1,675,120	+				+0.4
1,675,125	+				+0.3
1,675,125	+				-0.5
1,675,125	+				+1.0
1,675,125	+				+0.6
1,675,164	+		GFF1650	0.18	-1.0
1,675,164	+		GFF1650	0.18	+0.4
1,675,172	-		GFF1650	0.21	+1.2
1,675,192	+		GFF1650	0.27	-0.1
1,675,224	-		GFF1650	0.38	+0.9
1,675,262	+		GFF1650	0.51	-0.3
1,675,324	+		GFF1650	0.71	-0.8
1,675,334	+		GFF1650	0.75	-0.2
1,675,342	-		GFF1650	0.77	+1.3
1,675,342	-		GFF1650	0.77	-1.1
1,675,342	-		GFF1650	0.77	+0.1
1,675,353	-		GFF1650	0.81	+0.4
1,675,358	-		GFF1650	0.83	+0.3
1,675,359	+		GFF1650	0.83	+0.8
1,675,369	-		GFF1650	0.86	+2.1
1,675,369	-		GFF1650	0.86	+0.5
1,675,420	-				-0.2
1,675,514	+				-0.0
1,675,519	+				-0.9
1,675,522	-				-0.8
1,675,605	-				-0.7
1,675,646	+				-0.8
1,675,656	+				-0.0
1,675,656	+				-0.4
1,675,656	+				-1.3
1,675,659	-				-1.1
1,675,688	+				-0.0
1,675,723	-				-0.6
1,675,749	-				-2.3
1,675,906	+		GFF1651	0.17	-2.9
1,675,923	+		GFF1651	0.18	-2.2
1,675,936	-		GFF1651	0.19	-0.5
1,675,936	-		GFF1651	0.19	-1.3
1,675,948	+		GFF1651	0.20	-0.4
1,675,953	+		GFF1651	0.20	-2.6
1,675,999	+		GFF1651	0.23	-1.1
1,675,999	+		GFF1651	0.23	-1.9
1,675,999	+		GFF1651	0.23	-1.1
1,675,999	+		GFF1651	0.23	-2.1
1,675,999	+		GFF1651	0.23	-1.8
1,675,999	+		GFF1651	0.23	-1.7
1,676,001	-		GFF1651	0.23	-1.5
1,676,004	+		GFF1651	0.23	-2.4
1,676,005	+		GFF1651	0.23	-0.3
1,676,005	+		GFF1651	0.23	-1.7
1,676,005	+		GFF1651	0.23	-0.7
1,676,006	-		GFF1651	0.23	+0.5
1,676,010	+		GFF1651	0.23	-3.3
1,676,013	-		GFF1651	0.23	-0.8
1,676,015	+		GFF1651	0.23	-0.2
1,676,015	+		GFF1651	0.23	-1.6
1,676,015	+		GFF1651	0.23	-1.6
1,676,015	+		GFF1651	0.23	+0.0
1,676,018	-		GFF1651	0.24	-1.1
1,676,023	-		GFF1651	0.24	-1.0
1,676,023	-		GFF1651	0.24	-1.1
1,676,023	-		GFF1651	0.24	-2.7
1,676,023	-		GFF1651	0.24	-1.0
1,676,050	-		GFF1651	0.25	-2.3
1,676,071	-		GFF1651	0.27	+0.4
1,676,120	+		GFF1651	0.29	+1.1
1,676,140	+		GFF1651	0.30	-2.2
1,676,146	-		GFF1651	0.31	+0.0
1,676,148	+		GFF1651	0.31	-3.1
1,676,148	+		GFF1651	0.31	-1.6
1,676,158	+		GFF1651	0.31	-0.9
1,676,195	+		GFF1651	0.34	-1.6
1,676,195	+		GFF1651	0.34	-1.8
1,676,195	+		GFF1651	0.34	-0.9
1,676,195	+		GFF1651	0.34	-1.1
1,676,195	+		GFF1651	0.34	-0.7
1,676,195	+		GFF1651	0.34	-1.1
1,676,195	+		GFF1651	0.34	-0.9
1,676,195	+		GFF1651	0.34	-0.4
1,676,195	+		GFF1651	0.34	-0.3
1,676,195	+		GFF1651	0.34	-2.1
1,676,195	+		GFF1651	0.34	-0.3
1,676,195	+		GFF1651	0.34	-0.6
1,676,195	+		GFF1651	0.34	-0.3
1,676,195	+		GFF1651	0.34	-2.1
1,676,195	+		GFF1651	0.34	-0.8
1,676,203	-		GFF1651	0.34	-0.2
1,676,203	-		GFF1651	0.34	-3.0
1,676,203	-		GFF1651	0.34	-3.8
1,676,203	-		GFF1651	0.34	+0.4
1,676,203	-		GFF1651	0.34	-3.2
1,676,203	-		GFF1651	0.34	+0.4
1,676,203	-		GFF1651	0.34	-0.1
1,676,203	-		GFF1651	0.34	-1.4
1,676,203	-		GFF1651	0.34	-0.8
1,676,203	-		GFF1651	0.34	-2.2
1,676,203	-		GFF1651	0.34	-0.9
1,676,213	-		GFF1651	0.35	-0.7
1,676,213	-		GFF1651	0.35	+1.2
1,676,213	-		GFF1651	0.35	-2.1
1,676,251	+		GFF1651	0.37	-0.8
1,676,292	-		GFF1651	0.39	-2.7
1,676,302	+		GFF1651	0.40	-0.0
1,676,322	+		GFF1651	0.41	-0.7
1,676,334	-		GFF1651	0.41	+0.5
1,676,376	+		GFF1651	0.44	-2.6
1,676,385	+		GFF1651	0.44	+0.1
1,676,439	+		GFF1651	0.47	-1.0
1,676,441	+		GFF1651	0.47	-2.9
1,676,449	-		GFF1651	0.48	-2.7
1,676,449	-		GFF1651	0.48	-0.2
1,676,468	+		GFF1651	0.49	-2.6
1,676,488	+		GFF1651	0.50	-0.1
1,676,488	+		GFF1651	0.50	-1.1
1,676,488	+		GFF1651	0.50	+0.2
1,676,488	+		GFF1651	0.50	-1.3
1,676,488	+		GFF1651	0.50	-2.2
1,676,496	-		GFF1651	0.50	-3.5
1,676,496	-		GFF1651	0.50	-1.1
1,676,496	-		GFF1651	0.50	-2.1
1,676,518	+		GFF1651	0.52	-0.0
1,676,526	-		GFF1651	0.52	-0.9
1,676,527	-		GFF1651	0.52	-1.0
1,676,532	-		GFF1651	0.52	-2.2
1,676,562	+		GFF1651	0.54	-1.6
1,676,590	+		GFF1651	0.56	-0.4
1,676,608	-		GFF1651	0.57	-0.5
1,676,625	+		GFF1651	0.58	+0.2
1,676,635	+		GFF1651	0.58	+0.1
1,676,641	-		GFF1651	0.59	-2.7
1,676,643	-		GFF1651	0.59	-1.4
1,676,644	-		GFF1651	0.59	-0.2
1,676,697	-		GFF1651	0.62	-1.7
1,676,707	-		GFF1651	0.62	-2.3
1,676,707	-		GFF1651	0.62	-2.2
1,676,707	-		GFF1651	0.62	-1.3
1,676,780	-		GFF1651	0.66	-0.9
1,676,819	+		GFF1651	0.69	-1.1
1,676,838	-		GFF1651	0.70	-0.0
1,676,875	+		GFF1651	0.72	-1.4
1,676,900	+		GFF1651	0.73	-1.1
1,676,900	+		GFF1651	0.73	-1.9
1,676,900	+		GFF1651	0.73	-1.8
1,676,900	+		GFF1651	0.73	-0.9
1,676,900	+		GFF1651	0.73	-2.1
1,676,908	+		GFF1651	0.74	-0.3
1,676,908	+		GFF1651	0.74	-1.2
1,676,908	-		GFF1651	0.74	-0.6
1,676,985	-		GFF1651	0.78	-0.7
1,676,985	-		GFF1651	0.78	-0.4
1,677,002	-		GFF1651	0.79	-1.6
1,677,013	+		GFF1651	0.79	-0.7
1,677,050	+		GFF1651	0.81	+0.4
1,677,050	+		GFF1651	0.81	-1.0
1,677,054	-		GFF1651	0.82	-2.6
1,677,058	-		GFF1651	0.82	-1.6
1,677,067	+		GFF1651	0.82	-1.8
1,677,071	+		GFF1651	0.83	-1.2
1,677,107	-		GFF1651	0.85	-1.3
1,677,167	+		GFF1651	0.88	-1.0
1,677,172	-		GFF1651	0.88	+0.0
1,677,172	-		GFF1651	0.88	-1.7
1,677,175	-		GFF1651	0.88	+0.5
1,677,181	-		GFF1651	0.89	-0.3
1,677,224	+				-1.2
1,677,275	-				-2.5
1,677,305	-				-1.9
1,677,329	+				-2.7
1,677,329	+				-1.3
1,677,329	+				-0.5
1,677,337	-				+2.0
1,677,337	-				-0.9
1,677,337	-				-0.5
1,677,337	-				-0.6
1,677,337	-				-1.0
1,677,337	-				-1.4
1,677,337	-				+0.6
1,677,368	-				-2.5
1,677,372	+				-0.1
1,677,374	+				+0.8
1,677,382	-				-1.1
1,677,408	+				-0.1
1,677,413	+				+0.9
1,677,413	+				+0.4
1,677,413	+				+0.9
1,677,413	+				+1.1
1,677,413	+				-1.0
1,677,413	+				+0.1
1,677,413	+				+0.3
1,677,413	+				-0.0
1,677,413	+				+1.4
1,677,413	+				-0.7
1,677,413	+				+0.4
1,677,421	-				+0.0
1,677,421	-				+0.3
1,677,421	-				-0.5
1,677,421	-				+0.2
1,677,463	-				-1.2
1,677,463	-				+2.4
1,677,510	-				-0.8
1,677,557	+				-0.5
1,677,602	-				+0.2
1,677,604	+				-1.3
1,677,604	+				-1.0
1,677,610	-				+1.1
1,677,620	+				+0.6
1,677,620	+				-0.7
1,677,633	-				-0.3
1,677,633	-				+0.0
1,677,666	+				-1.7
1,677,669	-				-0.4
1,677,674	-				+1.0
1,677,674	-				-0.4
1,677,691	-		GFF1652	0.10	-0.3
1,677,694	+		GFF1652	0.10	+0.7
1,677,781	+		GFF1652	0.20	-0.4
1,677,827	+		GFF1652	0.25	-0.2
1,677,827	+		GFF1652	0.25	+0.4
1,677,835	-		GFF1652	0.25	-0.3
1,677,837	+		GFF1652	0.26	-1.5
1,677,861	-		GFF1652	0.28	+0.7
1,677,863	+		GFF1652	0.28	-0.6
1,677,871	-		GFF1652	0.29	-1.2
1,677,876	+		GFF1652	0.30	-0.9
1,677,944	+		GFF1652	0.37	+1.0
1,677,987	-		GFF1652	0.42	+0.4
1,677,987	-		GFF1652	0.42	+1.2
1,678,031	-		GFF1652	0.46	+0.3
1,678,078	+		GFF1652	0.51	-0.9
1,678,089	-		GFF1652	0.52	+0.2
1,678,101	+		GFF1652	0.54	-1.5
1,678,129	+		GFF1652	0.57	+0.6
1,678,132	-		GFF1652	0.57	+0.4
1,678,153	+		GFF1652	0.59	-1.0
1,678,153	+		GFF1652	0.59	+2.1
1,678,153	+		GFF1652	0.59	+0.6
1,678,161	-		GFF1652	0.60	+0.7
1,678,161	-		GFF1652	0.60	-0.4
1,678,210	-		GFF1652	0.65	+0.7
1,678,261	-		GFF1652	0.71	-0.1
1,678,273	+		GFF1652	0.72	-0.8
1,678,286	-		GFF1652	0.73	+0.7
1,678,286	-		GFF1652	0.73	+0.0
1,678,308	+		GFF1652	0.76	-1.2
1,678,316	-		GFF1652	0.76	-0.8
1,678,316	-		GFF1652	0.76	+0.8
1,678,316	-		GFF1652	0.76	+0.5
1,678,339	+		GFF1652	0.79	+0.7
1,678,357	-		GFF1652	0.81	-0.5