Strain Fitness in Sphingobium sp. HT1-2 around GFF1623

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,651,203	+				-0.4
1,651,236	+				+0.3
1,651,250	+				-0.7
1,651,257	+				-0.6
1,651,257	+				-0.4
1,651,257	+				+0.3
1,651,257	+				+0.1
1,651,258	-				-0.2
1,651,265	-				+0.8
1,651,314	+				+0.5
1,651,353	-				+0.8
1,651,372	+		GFF1622	0.14	+0.3
1,651,372	+		GFF1622	0.14	-1.0
1,651,372	+		GFF1622	0.14	+0.6
1,651,372	+		GFF1622	0.14	-1.0
1,651,372	+		GFF1622	0.14	-0.2
1,651,372	+		GFF1622	0.14	+0.9
1,651,372	+		GFF1622	0.14	-0.6
1,651,372	+		GFF1622	0.14	-2.6
1,651,372	+		GFF1622	0.14	+0.4
1,651,372	+		GFF1622	0.14	+1.5
1,651,372	+		GFF1622	0.14	+0.5
1,651,372	+		GFF1622	0.14	+0.6
1,651,372	+		GFF1622	0.14	+1.3
1,651,380	-		GFF1622	0.17	-0.4
1,651,380	-		GFF1622	0.17	-0.4
1,651,380	-		GFF1622	0.17	+1.3
1,651,380	-		GFF1622	0.17	+0.7
1,651,380	-		GFF1622	0.17	+0.2
1,651,380	-		GFF1622	0.17	-0.6
1,651,380	-		GFF1622	0.17	+0.0
1,651,380	-		GFF1622	0.17	+0.5
1,651,380	-		GFF1622	0.17	-0.7
1,651,390	+		GFF1622	0.20	-1.4
1,651,390	+		GFF1622	0.20	+0.7
1,651,396	-		GFF1622	0.21	+1.4
1,651,398	-		GFF1622	0.22	-1.0
1,651,398	-		GFF1622	0.22	-0.6
1,651,398	-		GFF1622	0.22	-0.6
1,651,398	-		GFF1622	0.22	+0.6
1,651,398	-		GFF1622	0.22	+0.6
1,651,398	-		GFF1622	0.22	-1.1
1,651,410	+		GFF1622	0.25	-0.1
1,651,417	+		GFF1622	0.27	+0.3
1,651,427	+		GFF1622	0.30	+0.7
1,651,481	+		GFF1622	0.46	+0.0
1,651,481	+		GFF1622	0.46	-0.1
1,651,503	-		GFF1622	0.52	-0.5
1,651,512	+		GFF1622	0.55	-0.3
1,651,512	+		GFF1622	0.55	-2.8
1,651,520	+		GFF1622	0.57	+0.5
1,651,520	+		GFF1622	0.57	+0.1
1,651,539	+		GFF1622	0.62	-0.2
1,651,547	+		GFF1622	0.65	-1.0
1,651,550	-		GFF1622	0.66	+0.9
1,651,565	+		GFF1622	0.70	+0.3
1,651,565	+		GFF1622	0.70	-1.2
1,651,577	-		GFF1622	0.73	-0.5
1,651,579	-		GFF1622	0.74	+0.2
1,651,589	+		GFF1622	0.77	-1.5
1,651,589	+		GFF1622	0.77	-0.5
1,651,614	+		GFF1622	0.84	-0.1
1,651,614	+		GFF1622	0.84	+0.1
1,651,663	+				+1.1
1,651,666	-				-0.8
1,651,671	-				+1.1
1,651,671	-				-0.1
1,651,671	-				-0.2
1,651,682	-				-1.2
1,651,684	+				-0.3
1,651,706	+				-1.3
1,651,711	+				-0.1
1,651,724	-				-1.5
1,651,725	-				-2.0
1,651,735	-				+0.3
1,651,742	-				-0.4
1,651,762	-				-1.1
1,651,766	-				+1.0
1,651,832	+		GFF1623	0.11	+1.1
1,651,832	+		GFF1623	0.11	-0.5
1,651,838	-		GFF1623	0.11	-0.8
1,651,845	-		GFF1623	0.12	+0.7
1,651,847	+		GFF1623	0.12	-2.0
1,651,850	-		GFF1623	0.12	-1.8
1,651,852	-		GFF1623	0.12	-1.2
1,651,853	-		GFF1623	0.12	-1.4
1,651,928	+		GFF1623	0.19	-0.4
1,651,933	+		GFF1623	0.20	+0.6
1,651,941	-		GFF1623	0.20	-0.7
1,651,976	+		GFF1623	0.23	-0.6
1,651,981	+		GFF1623	0.24	+0.1
1,651,984	-		GFF1623	0.24	-0.4
1,651,984	-		GFF1623	0.24	+0.4
1,651,984	-		GFF1623	0.24	-0.7
1,651,984	-		GFF1623	0.24	+0.5
1,651,997	-		GFF1623	0.25	-0.6
1,652,036	+		GFF1623	0.29	-1.3
1,652,042	-		GFF1623	0.29	-0.6
1,652,082	+		GFF1623	0.33	-1.0
1,652,090	-		GFF1623	0.34	+0.1
1,652,102	+		GFF1623	0.35	+0.2
1,652,108	+		GFF1623	0.35	-0.7
1,652,108	+		GFF1623	0.35	-1.5
1,652,183	-		GFF1623	0.42	+1.2
1,652,215	-		GFF1623	0.45	+0.1
1,652,280	-		GFF1623	0.51	+0.3
1,652,291	-		GFF1623	0.52	-1.0
1,652,292	-		GFF1623	0.52	-1.2
1,652,293	-		GFF1623	0.52	+0.3
1,652,316	+		GFF1623	0.54	-0.7
1,652,330	+		GFF1623	0.55	-0.2
1,652,330	+		GFF1623	0.55	-1.7
1,652,340	+		GFF1623	0.56	-0.4
1,652,398	-		GFF1623	0.61	+1.3
1,652,402	+		GFF1623	0.62	+1.1
1,652,404	-		GFF1623	0.62	+0.9
1,652,410	-		GFF1623	0.62	-1.0
1,652,419	-		GFF1623	0.63	-1.2
1,652,470	+		GFF1623	0.68	+0.5
1,652,500	+		GFF1623	0.70	-1.5
1,652,500	+		GFF1623	0.70	-1.6
1,652,527	+		GFF1623	0.73	-1.6
1,652,532	+		GFF1623	0.73	-0.6
1,652,548	-		GFF1623	0.75	+0.3
1,652,573	+		GFF1623	0.77	+0.4
1,652,593	-		GFF1623	0.79	-0.8
1,652,645	-		GFF1623	0.83	-1.4
1,652,665	-		GFF1623	0.85	+1.0
1,652,713	+		GFF1623	0.90	-0.2
1,652,713	+		GFF1623	0.90	+0.2
1,652,713	+		GFF1623	0.90	-0.7
1,652,713	+		GFF1623	0.90	-0.6
1,652,713	+		GFF1623	0.90	+0.5
1,652,713	+		GFF1623	0.90	-1.4
1,652,721	-				+0.3
1,652,721	-				-0.7
1,652,721	-				-1.0
1,652,721	-				-0.3
1,652,721	-				+0.8
1,652,798	+				+0.3
1,652,806	-				-1.0
1,652,806	-				-1.0
1,652,844	-				+0.1
1,652,875	+				-0.2
1,652,878	+				-0.6
1,652,890	+				+0.2
1,652,890	+				-0.1
1,652,893	-				-1.3
1,652,898	-				+1.0
1,652,900	+				+0.4
1,652,900	+				-1.3
1,652,900	+				+0.8
1,652,900	+				-1.5
1,652,908	-				+1.0
1,652,908	-				-0.2
1,652,908	-				-0.0
1,652,908	-				+0.3
1,652,917	+				-0.2
1,652,934	+				-1.8
1,652,942	-				+0.4
1,652,950	+				-0.4
1,653,043	+		GFF1624	0.17	+0.7
1,653,046	-		GFF1624	0.18	+0.4
1,653,046	-		GFF1624	0.18	-0.6
1,653,070	+		GFF1624	0.21	-2.5
1,653,075	+		GFF1624	0.21	-0.4
1,653,099	-		GFF1624	0.24	+0.0
1,653,113	+		GFF1624	0.26	-1.4
1,653,113	+		GFF1624	0.26	-0.7
1,653,122	+		GFF1624	0.27	-0.2
1,653,140	+		GFF1624	0.29	-1.5
1,653,148	-		GFF1624	0.30	+0.8
1,653,148	-		GFF1624	0.30	-0.6
1,653,170	+		GFF1624	0.32	+0.0
1,653,189	+		GFF1624	0.35	-0.6
1,653,189	+		GFF1624	0.35	+0.1
1,653,189	+		GFF1624	0.35	-0.0
1,653,197	-		GFF1624	0.35	+0.1
1,653,197	-		GFF1624	0.35	-1.8
1,653,197	-		GFF1624	0.35	-0.8
1,653,199	+		GFF1624	0.36	-1.8
1,653,199	+		GFF1624	0.36	+0.4
1,653,199	+		GFF1624	0.36	-0.1
1,653,199	+		GFF1624	0.36	-1.1
1,653,199	+		GFF1624	0.36	-0.7
1,653,199	+		GFF1624	0.36	+0.3
1,653,199	+		GFF1624	0.36	-0.2
1,653,199	+		GFF1624	0.36	-0.8
1,653,202	-		GFF1624	0.36	-0.8
1,653,204	+		GFF1624	0.36	-0.4
1,653,207	-		GFF1624	0.37	-2.0
1,653,207	-		GFF1624	0.37	-0.5
1,653,207	-		GFF1624	0.37	+0.2
1,653,207	-		GFF1624	0.37	-1.2
1,653,207	-		GFF1624	0.37	+0.3
1,653,207	-		GFF1624	0.37	-2.2
1,653,207	-		GFF1624	0.37	-0.2
1,653,246	-		GFF1624	0.41	-1.6
1,653,248	+		GFF1624	0.41	+0.6
1,653,268	-		GFF1624	0.44	+0.4
1,653,288	-		GFF1624	0.46	-0.8
1,653,288	-		GFF1624	0.46	-0.5
1,653,330	+		GFF1624	0.51	+0.4
1,653,332	+		GFF1624	0.51	-1.7
1,653,332	+		GFF1624	0.51	-1.4
1,653,332	+		GFF1624	0.51	-0.2
1,653,332	+		GFF1624	0.51	-2.2
1,653,332	+		GFF1624	0.51	-1.0
1,653,332	+		GFF1624	0.51	+1.8
1,653,332	+		GFF1624	0.51	+0.3
1,653,340	-		GFF1624	0.52	-0.9
1,653,340	-		GFF1624	0.52	-1.6
1,653,340	-		GFF1624	0.52	-1.2
1,653,340	-		GFF1624	0.52	-0.2
1,653,340	-		GFF1624	0.52	-0.3
1,653,340	-		GFF1624	0.52	-1.5
1,653,340	-		GFF1624	0.52	-1.5
1,653,340	-		GFF1624	0.52	-1.4
1,653,363	-		GFF1624	0.55	-1.9
1,653,406	-		GFF1624	0.60	-0.5
1,653,420	+		GFF1624	0.62	-0.2
1,653,420	+		GFF1624	0.62	-0.2
1,653,427	-		GFF1624	0.62	-1.9
1,653,428	-		GFF1624	0.63	+0.9
1,653,433	+		GFF1624	0.63	-1.6
1,653,433	+		GFF1624	0.63	-2.6
1,653,433	+		GFF1624	0.63	+0.8
1,653,439	-		GFF1624	0.64	-2.2
1,653,441	-		GFF1624	0.64	-0.7
1,653,441	-		GFF1624	0.64	-1.4
1,653,467	+		GFF1624	0.67	-1.4
1,653,480	+		GFF1624	0.69	-0.4
1,653,481	-		GFF1624	0.69	-1.2
1,653,495	+		GFF1624	0.70	+0.8
1,653,503	-		GFF1624	0.71	-1.2
1,653,527	+		GFF1624	0.74	-0.1
1,653,530	-		GFF1624	0.75	-0.4
1,653,530	-		GFF1624	0.75	-0.7
1,653,536	-		GFF1624	0.75	+1.0
1,653,554	+		GFF1624	0.77	-0.1
1,653,565	+		GFF1624	0.79	-1.2
1,653,602	+		GFF1624	0.83	-1.4
1,653,602	+		GFF1624	0.83	-0.0
1,653,607	+		GFF1624	0.84	-1.5
1,653,607	+		GFF1624	0.84	+0.6
1,653,615	-		GFF1624	0.85	-0.8
1,653,615	-		GFF1624	0.85	+0.0
1,653,626	-		GFF1624	0.86	-1.0
1,653,665	-				-0.5
1,653,675	+				-0.5
1,653,676	-				+0.6
1,653,683	-				-0.5
1,653,683	-				-1.4
1,653,688	-				-0.6
1,653,688	-				-1.8
1,653,688	-				-1.2
1,653,693	-				+1.1
1,653,693	-				-0.8
1,653,702	-				-1.6
1,653,706	+				+0.3
1,653,706	+				-0.2
1,653,711	+				-1.4
1,653,719	-				-1.4
1,653,721	+				+0.6
1,653,721	+				+0.0
1,653,721	+				+1.1
1,653,721	+				-0.2
1,653,721	+				-0.8
1,653,721	+				+0.8
1,653,721	+				-2.2
1,653,721	+				+0.5
1,653,721	+				-0.4
1,653,721	+				+1.5
1,653,729	-				-0.4
1,653,729	-				-0.5
1,653,729	-				-0.1
1,653,729	-				-2.0
1,653,729	-				-1.7
1,653,729	-				-1.2
1,653,729	-				+0.1
1,653,729	-				-1.7
1,653,729	-				+0.9
1,653,731	+				-0.8
1,653,731	+				-0.7
1,653,731	+				-0.2
1,653,731	+				+0.2
1,653,731	+				-0.2
1,653,731	+				-1.0
1,653,734	-				-0.1
1,653,734	-				-0.6
1,653,739	-				-0.1
1,653,739	-				-1.4
1,653,739	-				+0.0
1,653,741	+				-0.2
1,653,741	+				-0.4
1,653,741	+				+0.0
1,653,741	+				-2.2
1,653,749	-				-1.0
1,653,749	-				-0.7
1,653,749	-				-1.5
1,653,769	+				-0.8
1,653,769	+				+1.0
1,653,769	+				+0.8
1,653,769	+				+0.7
1,653,769	+				+0.3
1,653,777	-				+0.0
1,653,777	-				-0.4
1,653,777	-				-0.5
1,653,777	-				-0.4
1,653,779	-				-2.2
1,653,800	+				+1.4
1,653,805	+				-1.0
1,653,817	+				-1.5
1,653,825	-				-2.8