Strain Fitness in Sphingobium sp. HT1-2 around GFF1608

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,634,477	-				-0.2
1,634,478	+				+0.1
1,634,478	+				-0.2
1,634,478	+				-0.1
1,634,486	-				-1.0
1,634,486	-				+1.2
1,634,486	-				+0.6
1,634,488	-				-0.8
1,634,522	+				-0.4
1,634,530	-				-0.1
1,634,622	+				+0.3
1,634,622	+				+1.1
1,634,625	+				+0.4
1,634,643	-				-2.2
1,634,687	-				+0.9
1,634,689	+				+0.9
1,634,689	+				-0.6
1,634,692	-				-0.2
1,634,707	+				-0.4
1,634,716	-				-0.0
1,634,728	+				-1.9
1,634,741	-				-0.1
1,634,744	+				-0.0
1,634,744	+				-0.9
1,634,752	-				+1.9
1,634,759	+				+0.4
1,634,759	+				+1.1
1,634,762	-				+0.3
1,634,767	-				+0.2
1,634,767	-				-0.7
1,634,773	-				-0.1
1,634,773	-				-0.3
1,634,774	-				+0.5
1,634,791	+				-2.0
1,634,796	+				-1.3
1,634,797	-				+0.2
1,634,799	-				-0.4
1,634,801	+				-1.5
1,634,804	-				-0.5
1,634,823	-				+0.4
1,634,824	+				-0.1
1,634,839	+				-0.8
1,634,839	+				+0.9
1,634,839	+				-1.1
1,634,839	+				+0.5
1,634,839	+				+0.5
1,634,839	+				+0.3
1,634,839	+				-0.0
1,634,839	+				+0.4
1,634,839	+				-0.1
1,634,839	+				-1.0
1,634,839	+				+0.2
1,634,839	+				+1.9
1,634,839	+				+0.6
1,634,847	-				+0.4
1,634,847	-				+0.7
1,634,847	-				-0.4
1,634,847	-				+0.3
1,634,847	-				-0.0
1,634,847	-				+1.4
1,634,847	-				+0.1
1,634,847	-				-2.2
1,634,847	-				+0.3
1,634,862	-				-0.4
1,634,865	+				-0.4
1,634,900	-				-0.5
1,634,900	-				+1.1
1,634,900	-				+0.4
1,634,900	-				-1.4
1,634,910	-		GFF1608	0.10	+1.4
1,634,912	+		GFF1608	0.10	+0.1
1,634,931	+		GFF1608	0.11	+0.3
1,634,931	+		GFF1608	0.11	+0.0
1,634,931	+		GFF1608	0.11	-0.4
1,634,941	+		GFF1608	0.12	+0.3
1,634,941	+		GFF1608	0.12	-0.4
1,634,949	-		GFF1608	0.12	-1.5
1,634,949	-		GFF1608	0.12	-1.2
1,634,954	+		GFF1608	0.12	+0.1
1,634,993	+		GFF1608	0.14	+0.4
1,635,024	+		GFF1608	0.15	+0.1
1,635,025	-		GFF1608	0.15	+0.8
1,635,025	-		GFF1608	0.15	+0.2
1,635,040	+		GFF1608	0.16	-1.9
1,635,063	+		GFF1608	0.17	+0.1
1,635,063	+		GFF1608	0.17	-1.9
1,635,063	+		GFF1608	0.17	+0.2
1,635,080	+		GFF1608	0.18	-0.3
1,635,080	+		GFF1608	0.18	-0.4
1,635,108	+		GFF1608	0.19	-0.2
1,635,116	-		GFF1608	0.19	-0.5
1,635,134	+		GFF1608	0.20	-0.5
1,635,134	+		GFF1608	0.20	-0.0
1,635,139	-		GFF1608	0.21	+0.5
1,635,140	+		GFF1608	0.21	+0.3
1,635,155	+		GFF1608	0.21	+1.2
1,635,185	+		GFF1608	0.23	+0.4
1,635,185	+		GFF1608	0.23	-0.4
1,635,185	+		GFF1608	0.23	+0.2
1,635,185	+		GFF1608	0.23	+0.8
1,635,185	+		GFF1608	0.23	-0.8
1,635,185	+		GFF1608	0.23	-0.2
1,635,193	-		GFF1608	0.23	-1.1
1,635,193	-		GFF1608	0.23	+1.5
1,635,193	-		GFF1608	0.23	+0.9
1,635,262	+		GFF1608	0.26	-0.4
1,635,263	-		GFF1608	0.26	-0.3
1,635,263	-		GFF1608	0.26	+1.2
1,635,267	+		GFF1608	0.26	-1.6
1,635,267	+		GFF1608	0.26	+0.1
1,635,270	-		GFF1608	0.26	+0.9
1,635,270	-		GFF1608	0.26	-0.1
1,635,271	-		GFF1608	0.27	-0.4
1,635,272	+		GFF1608	0.27	-0.6
1,635,275	-		GFF1608	0.27	-1.5
1,635,275	-		GFF1608	0.27	-0.2
1,635,275	-		GFF1608	0.27	-1.4
1,635,275	-		GFF1608	0.27	-1.6
1,635,275	-		GFF1608	0.27	+0.1
1,635,275	-		GFF1608	0.27	-0.9
1,635,277	+		GFF1608	0.27	+0.2
1,635,285	-		GFF1608	0.27	-1.2
1,635,285	-		GFF1608	0.27	-0.4
1,635,286	+		GFF1608	0.27	+0.4
1,635,310	+		GFF1608	0.28	-0.8
1,635,312	+		GFF1608	0.28	+1.1
1,635,318	-		GFF1608	0.29	-0.2
1,635,318	-		GFF1608	0.29	+0.3
1,635,332	+		GFF1608	0.29	+0.3
1,635,391	+		GFF1608	0.32	-0.4
1,635,403	-		GFF1608	0.33	+0.1
1,635,450	+		GFF1608	0.35	-0.5
1,635,472	+		GFF1608	0.36	-0.5
1,635,472	+		GFF1608	0.36	-1.2
1,635,480	-		GFF1608	0.36	-0.5
1,635,480	-		GFF1608	0.36	-0.3
1,635,482	+		GFF1608	0.36	-0.6
1,635,482	+		GFF1608	0.36	-2.0
1,635,506	+		GFF1608	0.37	-0.7
1,635,506	+		GFF1608	0.37	-0.4
1,635,540	-		GFF1608	0.39	-1.2
1,635,540	-		GFF1608	0.39	-0.1
1,635,542	+		GFF1608	0.39	-0.1
1,635,550	-		GFF1608	0.39	-1.6
1,635,550	-		GFF1608	0.39	-2.3
1,635,556	-		GFF1608	0.39	-0.2
1,635,571	+		GFF1608	0.40	-0.5
1,635,571	+		GFF1608	0.40	-0.4
1,635,582	-		GFF1608	0.41	+0.1
1,635,612	+		GFF1608	0.42	-1.7
1,635,615	-		GFF1608	0.42	-0.8
1,635,630	+		GFF1608	0.43	+0.5
1,635,630	-		GFF1608	0.43	-0.2
1,635,638	-		GFF1608	0.43	+1.1
1,635,653	-		GFF1608	0.44	-0.3
1,635,710	+		GFF1608	0.46	-0.1
1,635,717	+		GFF1608	0.47	-2.0
1,635,724	-		GFF1608	0.47	+0.8
1,635,740	-		GFF1608	0.48	+0.0
1,635,771	+		GFF1608	0.49	-1.0
1,635,771	+		GFF1608	0.49	-0.6
1,635,787	+		GFF1608	0.50	-1.4
1,635,792	+		GFF1608	0.50	-0.3
1,635,795	-		GFF1608	0.50	-0.2
1,635,797	+		GFF1608	0.50	-0.1
1,635,797	+		GFF1608	0.50	-0.4
1,635,797	+		GFF1608	0.50	-0.7
1,635,797	+		GFF1608	0.50	-1.2
1,635,800	-		GFF1608	0.51	+0.7
1,635,807	+		GFF1608	0.51	+0.4
1,635,807	+		GFF1608	0.51	-0.8
1,635,807	+		GFF1608	0.51	+0.7
1,635,843	-		GFF1608	0.52	-2.0
1,635,884	-		GFF1608	0.54	+0.5
1,635,884	-		GFF1608	0.54	-0.5
1,635,914	-		GFF1608	0.56	+0.1
1,635,914	-		GFF1608	0.56	-0.5
1,635,918	-		GFF1608	0.56	+0.2
1,635,923	+		GFF1608	0.56	-0.2
1,635,928	+		GFF1608	0.56	-0.2
1,635,931	-		GFF1608	0.56	+0.3
1,635,931	-		GFF1608	0.56	-1.5
1,635,931	-		GFF1608	0.56	-1.1
1,635,931	-		GFF1608	0.56	+0.3
1,635,931	-		GFF1608	0.56	-0.7
1,635,940	-		GFF1608	0.57	+0.5
1,635,944	+		GFF1608	0.57	-0.0
1,635,944	+		GFF1608	0.57	+1.1
1,635,949	+		GFF1608	0.57	-1.5
1,635,957	-		GFF1608	0.58	-1.7
1,635,959	+		GFF1608	0.58	+0.2
1,635,971	+		GFF1608	0.58	-1.5
1,636,055	+		GFF1608	0.62	-0.5
1,636,117	+		GFF1608	0.65	+1.1
1,636,117	+		GFF1608	0.65	+2.1
1,636,118	+		GFF1608	0.65	+1.0
1,636,124	+		GFF1608	0.65	+0.2
1,636,134	+		GFF1608	0.66	-1.2
1,636,134	+		GFF1608	0.66	+0.7
1,636,142	-		GFF1608	0.66	+0.1
1,636,142	-		GFF1608	0.66	+0.8
1,636,142	-		GFF1608	0.66	-0.0
1,636,152	+		GFF1608	0.67	-0.5
1,636,175	+		GFF1608	0.68	-0.4
1,636,180	+		GFF1608	0.68	+1.7
1,636,180	+		GFF1608	0.68	-0.6
1,636,180	+		GFF1608	0.68	+0.3
1,636,180	+		GFF1608	0.68	+0.1
1,636,188	-		GFF1608	0.68	+0.3
1,636,188	-		GFF1608	0.68	-0.5
1,636,188	-		GFF1608	0.68	-0.6
1,636,189	-		GFF1608	0.68	-0.4
1,636,211	+		GFF1608	0.69	-1.5
1,636,219	+		GFF1608	0.70	-0.7
1,636,225	+		GFF1608	0.70	-0.5
1,636,226	+		GFF1608	0.70	+0.2
1,636,227	-		GFF1608	0.70	+0.9
1,636,233	-		GFF1608	0.70	-0.4
1,636,239	-		GFF1608	0.70	-0.6
1,636,294	+		GFF1608	0.73	-0.2
1,636,294	+		GFF1608	0.73	-0.5
1,636,296	+		GFF1608	0.73	-1.2
1,636,318	+		GFF1608	0.74	-0.1
1,636,332	+		GFF1608	0.75	-2.1
1,636,340	-		GFF1608	0.75	-0.9
1,636,343	-		GFF1608	0.75	-1.5
1,636,353	+		GFF1608	0.76	-0.1
1,636,361	-		GFF1608	0.76	-0.6
1,636,362	-		GFF1608	0.76	+0.1
1,636,368	+		GFF1608	0.76	+0.5
1,636,368	+		GFF1608	0.76	-0.3
1,636,378	+		GFF1608	0.77	-1.1
1,636,378	+		GFF1608	0.77	-0.2
1,636,386	-		GFF1608	0.77	-0.2
1,636,386	-		GFF1608	0.77	+0.3
1,636,386	-		GFF1608	0.77	+0.5
1,636,396	+		GFF1608	0.78	-0.0
1,636,396	+		GFF1608	0.78	-0.1
1,636,396	+		GFF1608	0.78	+0.0
1,636,399	-		GFF1608	0.78	-0.5
1,636,404	-		GFF1608	0.78	-0.5
1,636,404	-		GFF1608	0.78	-0.0
1,636,419	-		GFF1608	0.79	+0.3
1,636,437	+		GFF1608	0.79	-3.0
1,636,461	+		GFF1608	0.81	+1.3
1,636,461	+		GFF1608	0.81	-1.2
1,636,469	-		GFF1608	0.81	+0.1
1,636,469	-		GFF1608	0.81	+0.1
1,636,504	-		GFF1608	0.83	-1.0
1,636,506	+		GFF1608	0.83	-0.2
1,636,506	+		GFF1608	0.83	+0.1
1,636,506	+		GFF1608	0.83	+0.1
1,636,506	+		GFF1608	0.83	-1.5
1,636,521	+		GFF1608	0.83	-0.9
1,636,524	-		GFF1608	0.83	-1.2
1,636,531	+		GFF1608	0.84	+1.5
1,636,531	+		GFF1608	0.84	+0.1
1,636,555	+		GFF1608	0.85	-0.8
1,636,565	+		GFF1608	0.85	+0.6
1,636,565	-		GFF1608	0.85	+0.4
1,636,572	+		GFF1608	0.86	-0.2
1,636,572	+		GFF1608	0.86	-1.6
1,636,572	+		GFF1608	0.86	-0.7
1,636,572	+		GFF1608	0.86	-1.8
1,636,572	+		GFF1608	0.86	+0.7
1,636,572	+		GFF1608	0.86	-0.1
1,636,580	-		GFF1608	0.86	+0.1
1,636,580	-		GFF1608	0.86	-2.1
1,636,580	-		GFF1608	0.86	-0.1
1,636,580	-		GFF1608	0.86	-1.3
1,636,596	+		GFF1608	0.87	+0.9
1,636,597	+		GFF1608	0.87	-0.1
1,636,626	-		GFF1608	0.88	-1.2
1,636,631	-		GFF1608	0.88	+1.7
1,636,640	+		GFF1608	0.89	-0.0
1,636,657	+		GFF1608	0.89	+0.9
1,636,681	+				+1.1
1,636,681	+				+0.4
1,636,681	+				+0.7
1,636,689	-				-2.0
1,636,689	-				+0.1
1,636,689	-				-1.0
1,636,689	-				-0.5
1,636,689	-				-1.4
1,636,725	+				-0.1
1,636,725	+				-2.2
1,636,733	-				-0.5
1,636,781	-				+0.8
1,636,801	+				+2.1
1,636,815	+				-0.4
1,636,816	-				+2.2
1,636,817	-				-0.0
1,636,817	-				-3.1
1,636,819	+				-0.1
1,636,819	+				-0.3
1,636,819	+				-0.3
1,636,819	+				+0.7
1,636,823	-				-0.2
1,636,827	-				-0.0
1,636,827	-				+0.3
1,636,827	-				-1.4
1,636,834	+				-1.2
1,636,834	+				-1.9
1,636,834	+				+0.4
1,636,834	+				+0.1
1,636,842	-				-1.5
1,636,845	+				-0.1
1,636,845	+				+0.2
1,636,853	-				-0.5
1,636,853	-				-1.9
1,636,853	-				-0.5
1,636,855	+				-0.2
1,636,855	+				-0.9
1,636,855	+				-0.1
1,636,855	+				-0.2
1,636,855	+				-1.0
1,636,855	+				+0.9
1,636,855	+				+0.1
1,636,855	+				-1.2
1,636,863	-				-1.9
1,636,863	-				+0.1
1,636,863	-				-1.4
1,636,863	-				+0.5
1,636,863	-				-1.2
1,636,863	-				-0.1
1,636,863	-				-0.0
1,636,863	-				-0.1
1,636,863	-				-0.9
1,636,887	+				-1.2
1,636,887	+				+0.8
1,636,892	+				-0.7
1,636,895	-				-1.6
1,636,897	+				+1.2
1,636,900	-				+0.4
1,636,905	-				-1.7
1,636,905	-				-1.3
1,636,905	-				-1.2
1,636,937	+				+1.0
1,636,945	-				-2.9
1,636,955	-				-0.2
1,636,969	-				-0.7
1,636,977	-				-1.8
1,636,977	-				-1.1
1,636,987	+				+0.5
1,636,988	+				+0.1
1,636,988	+				+1.3
1,636,988	+				-0.9
1,636,988	+				-1.2
1,636,988	+				-0.7
1,636,988	+				+0.2
1,636,993	+				+0.7
1,636,993	+				+0.3
1,636,996	-				-0.3
1,636,996	-				+0.3
1,636,996	-				+1.1
1,636,996	-				-0.1
1,636,996	-				+0.2
1,636,996	-				+0.8
1,636,996	-				-0.2
1,636,996	-				-0.4
1,636,996	-				+0.1
1,636,996	-				+1.1
1,636,996	-				-1.4
1,636,996	-				+1.5
1,636,998	+				-0.2
1,636,998	+				+0.5
1,636,998	+				+0.2
1,636,998	+				+0.4
1,637,005	+				-1.1
1,637,006	+				-2.1
1,637,006	-				-0.1
1,637,006	-				-0.2
1,637,006	-				-0.3
1,637,006	-				-1.7
1,637,012	+				-1.4
1,637,052	+		GFF1609	0.24	-1.2
1,637,052	+		GFF1609	0.24	-0.8
1,637,052	+		GFF1609	0.24	+1.9
1,637,066	+		GFF1609	0.32	-0.7
1,637,068	+		GFF1609	0.33	+0.2
1,637,074	-		GFF1609	0.37	-0.1
1,637,074	-		GFF1609	0.37	-0.6
1,637,074	-		GFF1609	0.37	+1.5
1,637,085	+		GFF1609	0.43	+1.5
1,637,092	+		GFF1609	0.47	-0.4
1,637,100	-		GFF1609	0.51	-1.3
1,637,108	-		GFF1609	0.56	+0.0
1,637,108	-		GFF1609	0.56	+1.0
1,637,109	+		GFF1609	0.56	-1.5
1,637,126	+		GFF1609	0.66	-0.7
1,637,157	+		GFF1609	0.83	+0.0
1,637,176	+				+1.3
1,637,178	+				+0.0
1,637,178	+				-1.5
1,637,194	+				+1.6
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