Strain Fitness in Sphingobium sp. HT1-2 around GFF1579

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,606,861	+				-1.2
1,606,863	-				-0.1
1,606,865	+				-0.7
1,606,871	+				-0.5
1,606,871	+				+0.5
1,606,871	+				-0.4
1,606,879	-				-0.4
1,606,879	-				-2.0
1,606,951	+				+0.1
1,606,964	-				-0.1
1,606,974	-				-0.2
1,606,976	+				-0.8
1,606,984	-				-1.3
1,607,008	+				-0.1
1,607,064	+		GFF1578	0.15	-0.5
1,607,077	+		GFF1578	0.17	-0.1
1,607,085	-		GFF1578	0.18	-0.8
1,607,087	+		GFF1578	0.18	-0.6
1,607,095	-		GFF1578	0.19	+0.3
1,607,095	-		GFF1578	0.19	-0.9
1,607,095	-		GFF1578	0.19	-1.7
1,607,095	-		GFF1578	0.19	+0.1
1,607,095	-		GFF1578	0.19	+1.1
1,607,095	-		GFF1578	0.19	-1.6
1,607,095	-		GFF1578	0.19	-0.5
1,607,095	-		GFF1578	0.19	+2.4
1,607,095	-		GFF1578	0.19	-1.1
1,607,105	-		GFF1578	0.21	-1.0
1,607,112	+		GFF1578	0.22	+0.8
1,607,123	-		GFF1578	0.23	-1.1
1,607,133	+		GFF1578	0.24	-2.9
1,607,133	+		GFF1578	0.24	+0.2
1,607,159	+		GFF1578	0.28	-0.2
1,607,159	+		GFF1578	0.28	-0.6
1,607,164	+		GFF1578	0.29	-1.1
1,607,203	+		GFF1578	0.34	-0.6
1,607,216	+		GFF1578	0.36	-1.9
1,607,222	+		GFF1578	0.37	+0.6
1,607,224	-		GFF1578	0.37	+0.4
1,607,224	-		GFF1578	0.37	-0.8
1,607,227	-		GFF1578	0.37	-0.4
1,607,230	-		GFF1578	0.38	+0.1
1,607,238	+		GFF1578	0.39	+0.2
1,607,244	-		GFF1578	0.40	+0.4
1,607,246	-		GFF1578	0.40	-0.5
1,607,257	+		GFF1578	0.41	+1.2
1,607,259	-		GFF1578	0.42	-1.0
1,607,265	-		GFF1578	0.42	+0.5
1,607,282	+		GFF1578	0.45	-0.6
1,607,295	+		GFF1578	0.47	+0.1
1,607,295	+		GFF1578	0.47	+0.7
1,607,343	+		GFF1578	0.53	-0.6
1,607,352	+		GFF1578	0.54	-3.1
1,607,352	+		GFF1578	0.54	+2.1
1,607,360	-		GFF1578	0.55	-0.8
1,607,367	+		GFF1578	0.56	+1.2
1,607,435	+		GFF1578	0.66	+0.3
1,607,443	-		GFF1578	0.67	-0.3
1,607,467	-		GFF1578	0.70	-0.0
1,607,523	+		GFF1578	0.78	+0.8
1,607,523	+		GFF1578	0.78	-0.8
1,607,523	+		GFF1578	0.78	-0.2
1,607,552	+		GFF1578	0.81	-0.9
1,607,565	-		GFF1578	0.83	-1.7
1,607,576	+		GFF1578	0.85	-0.2
1,607,600	+		GFF1578	0.88	-0.7
1,607,600	+		GFF1578	0.88	+0.5
1,607,608	-		GFF1578	0.89	+0.1
1,607,608	-		GFF1578	0.89	+1.1
1,607,608	-		GFF1578	0.89	+0.2
1,607,630	+				-1.2
1,607,633	-				-1.7
1,607,635	+				-1.0
1,607,645	+				+0.5
1,607,680	+				-0.1
1,607,692	+				+0.4
1,607,714	+				+0.5
1,607,719	+				+0.4
1,607,719	+				-1.7
1,607,719	+				-0.8
1,607,722	-				-0.7
1,607,724	+				+0.9
1,607,727	-				+0.2
1,607,727	-				-0.5
1,607,730	+				+0.1
1,607,730	+				+2.1
1,607,732	-				+0.0
1,607,742	+				+0.9
1,607,819	-				+0.5
1,607,824	-				-0.4
1,607,874	+				-0.6
1,607,904	+				-0.9
1,607,904	+				+0.4
1,607,938	-				+0.5
1,607,953	+				+0.6
1,607,978	+				+0.1
1,607,978	+				-0.2
1,607,978	+				+0.4
1,607,978	+				-0.4
1,607,986	-		GFF1579	0.10	+0.7
1,607,986	-		GFF1579	0.10	+0.3
1,607,986	-		GFF1579	0.10	+1.7
1,607,986	-		GFF1579	0.10	-0.9
1,607,996	-		GFF1579	0.11	-0.8
1,607,996	-		GFF1579	0.11	+1.6
1,607,996	-		GFF1579	0.11	-0.7
1,607,998	+		GFF1579	0.11	-0.2
1,608,006	-		GFF1579	0.12	-1.7
1,608,011	+		GFF1579	0.12	-0.1
1,608,016	+		GFF1579	0.13	+1.2
1,608,016	+		GFF1579	0.13	+0.3
1,608,016	+		GFF1579	0.13	+0.0
1,608,016	+		GFF1579	0.13	+0.1
1,608,016	+		GFF1579	0.13	+0.7
1,608,016	+		GFF1579	0.13	+0.3
1,608,024	-		GFF1579	0.14	+0.4
1,608,027	+		GFF1579	0.14	-0.7
1,608,048	-		GFF1579	0.16	+0.3
1,608,048	-		GFF1579	0.16	+1.1
1,608,070	+		GFF1579	0.17	-1.5
1,608,075	+		GFF1579	0.18	+1.3
1,608,075	+		GFF1579	0.18	+1.4
1,608,083	-		GFF1579	0.18	+0.2
1,608,083	-		GFF1579	0.18	-0.7
1,608,086	+		GFF1579	0.19	+0.2
1,608,086	+		GFF1579	0.19	+0.4
1,608,091	+		GFF1579	0.19	-1.1
1,608,099	-		GFF1579	0.20	-0.8
1,608,107	-		GFF1579	0.20	-0.0
1,608,122	-		GFF1579	0.22	-0.5
1,608,122	-		GFF1579	0.22	-0.0
1,608,122	-		GFF1579	0.22	+0.2
1,608,155	-		GFF1579	0.24	+0.3
1,608,158	-		GFF1579	0.25	-0.3
1,608,163	+		GFF1579	0.25	+0.2
1,608,168	+		GFF1579	0.25	+0.4
1,608,173	+		GFF1579	0.26	+1.0
1,608,176	-		GFF1579	0.26	+0.2
1,608,303	-		GFF1579	0.37	-1.1
1,608,381	-		GFF1579	0.43	-0.3
1,608,400	+		GFF1579	0.45	+0.5
1,608,452	-		GFF1579	0.49	+1.8
1,608,475	+		GFF1579	0.51	-0.2
1,608,477	+		GFF1579	0.51	-0.7
1,608,512	+		GFF1579	0.54	-0.3
1,608,520	-		GFF1579	0.55	+0.8
1,608,531	+		GFF1579	0.56	+1.4
1,608,532	+		GFF1579	0.56	+0.4
1,608,571	-		GFF1579	0.59	+0.2
1,608,576	+		GFF1579	0.59	+1.0
1,608,579	-		GFF1579	0.59	-0.2
1,608,591	+		GFF1579	0.60	+0.1
1,608,597	+		GFF1579	0.61	-1.3
1,608,597	+		GFF1579	0.61	-0.1
1,608,624	+		GFF1579	0.63	-0.2
1,608,692	+		GFF1579	0.69	+0.7
1,608,692	+		GFF1579	0.69	-0.1
1,608,692	+		GFF1579	0.69	-0.0
1,608,692	+		GFF1579	0.69	-0.3
1,608,694	+		GFF1579	0.69	+1.3
1,608,700	-		GFF1579	0.69	+0.5
1,608,700	-		GFF1579	0.69	-1.8
1,608,700	-		GFF1579	0.69	+0.5
1,608,700	-		GFF1579	0.69	-0.1
1,608,700	-		GFF1579	0.69	-0.9
1,608,700	-		GFF1579	0.69	+1.3
1,608,700	-		GFF1579	0.69	+0.7
1,608,700	-		GFF1579	0.69	-0.3
1,608,711	+		GFF1579	0.70	+1.1
1,608,719	-		GFF1579	0.71	-0.9
1,608,719	-		GFF1579	0.71	-0.8
1,608,723	+		GFF1579	0.71	-1.5
1,608,734	+		GFF1579	0.72	+0.3
1,608,734	+		GFF1579	0.72	-0.4
1,608,734	+		GFF1579	0.72	-0.3
1,608,734	+		GFF1579	0.72	+0.3
1,608,750	-		GFF1579	0.74	+1.7
1,608,784	+		GFF1579	0.76	-1.5
1,608,784	+		GFF1579	0.76	-0.6
1,608,792	-		GFF1579	0.77	-1.1
1,608,792	-		GFF1579	0.77	+0.6
1,608,794	+		GFF1579	0.77	+1.5
1,608,799	+		GFF1579	0.78	-1.2
1,608,799	+		GFF1579	0.78	+1.4
1,608,799	+		GFF1579	0.78	+1.2
1,608,807	-		GFF1579	0.78	-0.2
1,608,807	-		GFF1579	0.78	-0.2
1,608,807	-		GFF1579	0.78	+1.1
1,608,807	-		GFF1579	0.78	-1.2
1,608,807	-		GFF1579	0.78	+0.8
1,608,832	-		GFF1579	0.80	+0.1
1,608,841	+		GFF1579	0.81	+0.9
1,608,843	-		GFF1579	0.81	-1.6
1,608,861	-		GFF1579	0.83	-0.0
1,608,869	-		GFF1579	0.83	+1.0
1,608,881	+		GFF1579	0.84	-1.1
1,608,881	+		GFF1579	0.84	-0.0
1,608,889	-		GFF1579	0.85	-0.5
1,608,904	-		GFF1579	0.86	+0.9
1,608,905	-		GFF1579	0.86	-1.6
1,608,958	+				-1.1
1,608,958	+				-0.2
1,608,958	+				+0.1
1,608,958	+				+0.5
1,608,958	+				-1.4
1,608,958	+				+0.2
1,608,958	+				-1.5
1,608,958	+				+0.5
1,608,958	+				+0.5
1,608,960	+				+1.1
1,608,978	-				-0.1
1,608,994	+				+0.0
1,608,994	+				+0.8
1,608,994	+				-0.0
1,608,994	+				+0.3
1,609,002	-				-1.2
1,609,033	+				-0.4
1,609,059	-				-0.1
1,609,070	-				+0.5
1,609,091	-				-1.3
1,609,093	+				-1.2
1,609,101	-				+0.4
1,609,170	-				-0.3
1,609,196	+				+0.8
1,609,198	+				-0.2
1,609,201	+				+0.2
1,609,204	-				-0.5
1,609,221	-				-0.3
1,609,224	+				-0.5
1,609,232	-				+1.9
1,609,232	-				-0.2
1,609,245	-				-2.0
1,609,262	+				+0.5
1,609,262	+				-1.0
1,609,262	+				+0.1
1,609,262	+				+0.7
1,609,262	+				+0.7
1,609,262	+				+2.0
1,609,262	+				+1.2
1,609,270	-				+1.7
1,609,270	-				-0.8
1,609,270	-				+0.4
1,609,270	-				-0.6
1,609,270	-				-0.3
1,609,270	-				+0.7
1,609,270	-				+0.4
1,609,313	+		GFF1580	0.10	-1.8
1,609,326	+		GFF1580	0.11	-1.0
1,609,326	-		GFF1580	0.11	-0.4
1,609,378	+		GFF1580	0.13	+1.2
1,609,378	+		GFF1580	0.13	+0.4
1,609,404	-		GFF1580	0.14	-1.1
1,609,430	+		GFF1580	0.15	+0.3
1,609,430	+		GFF1580	0.15	-0.9
1,609,438	+		GFF1580	0.16	+0.8
1,609,463	-		GFF1580	0.17	+0.6
1,609,466	+		GFF1580	0.17	+0.8
1,609,471	+		GFF1580	0.17	+0.5
1,609,471	+		GFF1580	0.17	+0.1
1,609,501	+		GFF1580	0.19	-0.6
1,609,501	+		GFF1580	0.19	+1.0
1,609,520	-		GFF1580	0.20	+1.2
1,609,579	+		GFF1580	0.22	+0.5
1,609,587	-		GFF1580	0.23	-0.5
1,609,587	-		GFF1580	0.23	-1.2
1,609,587	-		GFF1580	0.23	+0.8
1,609,594	+		GFF1580	0.23	-1.5
1,609,598	+		GFF1580	0.23	+1.8
1,609,603	+		GFF1580	0.23	+1.2
1,609,611	-		GFF1580	0.24	+0.1
1,609,611	-		GFF1580	0.24	-0.5
1,609,651	+		GFF1580	0.26	-0.2
1,609,657	-		GFF1580	0.26	+0.7
1,609,681	+		GFF1580	0.27	-0.4
1,609,686	-		GFF1580	0.27	+0.0
1,609,691	-		GFF1580	0.27	+0.2
1,609,700	+		GFF1580	0.28	+0.1
1,609,713	-		GFF1580	0.28	-1.0
1,609,713	-		GFF1580	0.28	+1.5
1,609,736	+		GFF1580	0.29	+0.4
1,609,736	+		GFF1580	0.29	-0.2
1,609,739	-		GFF1580	0.30	-0.1
1,609,741	+		GFF1580	0.30	-0.4
1,609,741	+		GFF1580	0.30	+1.7
1,609,741	+		GFF1580	0.30	-0.6
1,609,742	-		GFF1580	0.30	+0.1
1,609,749	-		GFF1580	0.30	-1.1
1,609,749	-		GFF1580	0.30	-0.1
1,609,749	-		GFF1580	0.30	+0.5
1,609,749	-		GFF1580	0.30	-0.7
1,609,749	-		GFF1580	0.30	-0.9
1,609,749	-		GFF1580	0.30	-0.2
1,609,749	-		GFF1580	0.30	+0.2
1,609,766	+		GFF1580	0.31	-0.8
1,609,766	+		GFF1580	0.31	-0.0
1,609,766	+		GFF1580	0.31	+0.2
1,609,785	+		GFF1580	0.32	-0.1
1,609,801	+		GFF1580	0.32	-0.6
1,609,802	+		GFF1580	0.33	-1.0
1,609,814	+		GFF1580	0.33	+0.7
1,609,814	+		GFF1580	0.33	+1.0
1,609,839	+		GFF1580	0.34	-0.6
1,609,839	+		GFF1580	0.34	-0.5
1,609,839	+		GFF1580	0.34	+0.2
1,609,841	-		GFF1580	0.34	+0.2
1,609,847	-		GFF1580	0.35	-1.8
1,609,847	-		GFF1580	0.35	+1.0
1,609,857	-		GFF1580	0.35	+1.7
1,609,857	-		GFF1580	0.35	+0.1
1,609,876	+		GFF1580	0.36	-0.2
1,609,894	+		GFF1580	0.37	-0.8
1,609,896	+		GFF1580	0.37	-1.2
1,609,902	-		GFF1580	0.37	-2.4
1,609,902	-		GFF1580	0.37	+1.4
1,609,917	+		GFF1580	0.38	+2.4
1,610,020	-		GFF1580	0.43	+0.2