Strain Fitness in Sphingobium sp. HT1-2 around GFF157

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
152,464	+		GFF156	0.45	-0.8
152,474	+		GFF156	0.45	-0.5
152,483	-		GFF156	0.46	+1.8
152,487	+		GFF156	0.46	-1.4
152,487	+		GFF156	0.46	-0.9
152,488	+		GFF156	0.46	-1.2
152,488	+		GFF156	0.46	-1.1
152,488	+		GFF156	0.46	-0.3
152,489	-		GFF156	0.46	-1.4
152,493	+		GFF156	0.46	-0.3
152,493	+		GFF156	0.46	-2.5
152,493	+		GFF156	0.46	-1.4
152,493	+		GFF156	0.46	-2.1
152,493	+		GFF156	0.46	-0.8
152,493	+		GFF156	0.46	+0.4
152,493	+		GFF156	0.46	+0.0
152,493	+		GFF156	0.46	-1.8
152,493	+		GFF156	0.46	+0.1
152,493	+		GFF156	0.46	+1.3
152,497	-		GFF156	0.47	-1.7
152,497	-		GFF156	0.47	-0.9
152,497	-		GFF156	0.47	+0.6
152,501	-		GFF156	0.47	+0.5
152,501	-		GFF156	0.47	+0.7
152,501	-		GFF156	0.47	-1.5
152,501	-		GFF156	0.47	-0.7
152,501	-		GFF156	0.47	-0.5
152,501	-		GFF156	0.47	+0.1
152,501	-		GFF156	0.47	+1.1
152,508	+		GFF156	0.47	+0.5
152,519	-		GFF156	0.48	-0.4
152,532	+		GFF156	0.49	-0.4
152,542	+		GFF156	0.49	+0.1
152,550	-		GFF156	0.50	-0.2
152,554	+		GFF156	0.50	-0.3
152,567	-		GFF156	0.51	-0.5
152,575	-		GFF156	0.51	-2.8
152,625	-		GFF156	0.54	+0.2
152,642	-		GFF156	0.55	+0.3
152,644	-		GFF156	0.55	-1.1
152,649	+		GFF156	0.55	-0.2
152,649	+		GFF156	0.55	+0.4
152,649	+		GFF156	0.55	+0.2
152,649	+		GFF156	0.55	-1.6
152,649	+		GFF156	0.55	+0.1
152,649	+		GFF156	0.55	-0.1
152,649	+		GFF156	0.55	+0.2
152,652	-		GFF156	0.55	+0.2
152,657	-		GFF156	0.56	-1.9
152,657	-		GFF156	0.56	-2.7
152,657	-		GFF156	0.56	-0.3
152,657	-		GFF156	0.56	-1.1
152,657	-		GFF156	0.56	+0.5
152,657	-		GFF156	0.56	+0.2
152,659	+		GFF156	0.56	-0.9
152,659	+		GFF156	0.56	+0.8
152,677	-		GFF156	0.57	-0.4
152,678	-		GFF156	0.57	-2.4
152,680	+		GFF156	0.57	-1.6
152,691	+		GFF156	0.57	+0.8
152,710	+		GFF156	0.58	-0.5
152,718	-		GFF156	0.59	-1.5
152,727	+		GFF156	0.59	-0.8
152,755	-		GFF156	0.61	-0.3
152,758	+		GFF156	0.61	-0.7
152,787	+		GFF156	0.63	-0.4
152,795	-		GFF156	0.63	-0.8
152,797	+		GFF156	0.63	-1.2
152,797	+		GFF156	0.63	+0.6
152,797	+		GFF156	0.63	-0.2
152,797	+		GFF156	0.63	-0.1
152,797	+		GFF156	0.63	-0.4
152,797	+		GFF156	0.63	-0.3
152,797	+		GFF156	0.63	+0.2
152,797	+		GFF156	0.63	-1.9
152,797	+		GFF156	0.63	+0.4
152,797	+		GFF156	0.63	-1.2
152,797	+		GFF156	0.63	+0.2
152,797	+		GFF156	0.63	+0.4
152,797	+		GFF156	0.63	-0.5
152,797	+		GFF156	0.63	+1.3
152,797	+		GFF156	0.63	-1.2
152,797	-		GFF156	0.63	-2.7
152,805	-		GFF156	0.64	-0.5
152,805	-		GFF156	0.64	+0.2
152,805	-		GFF156	0.64	-0.4
152,805	-		GFF156	0.64	-0.8
152,805	-		GFF156	0.64	-0.2
152,805	-		GFF156	0.64	-0.5
152,805	-		GFF156	0.64	+0.1
152,805	-		GFF156	0.64	-0.8
152,805	-		GFF156	0.64	+0.0
152,805	-		GFF156	0.64	-0.9
152,805	-		GFF156	0.64	+0.6
152,810	+		GFF156	0.64	+0.1
152,810	+		GFF156	0.64	-0.4
152,819	+		GFF156	0.65	+1.2
152,820	+		GFF156	0.65	-0.9
152,866	-		GFF156	0.67	+1.5
152,898	+		GFF156	0.69	+0.7
152,906	-		GFF156	0.69	-0.7
152,924	-		GFF156	0.70	+0.6
152,932	+		GFF156	0.71	+0.7
152,932	+		GFF156	0.71	-1.8
152,937	+		GFF156	0.71	-0.7
152,940	-		GFF156	0.71	-2.9
152,941	-		GFF156	0.71	+0.3
152,945	-		GFF156	0.71	+0.3
152,945	-		GFF156	0.71	+0.2
152,956	+		GFF156	0.72	+0.7
152,956	+		GFF156	0.72	-0.4
152,973	+		GFF156	0.73	+0.8
152,973	+		GFF156	0.73	-0.6
152,973	+		GFF156	0.73	-1.2
152,978	+		GFF156	0.73	+0.3
152,981	-		GFF156	0.73	-0.4
152,981	-		GFF156	0.73	-0.2
152,983	+		GFF156	0.74	-2.6
152,983	+		GFF156	0.74	-1.5
152,989	-		GFF156	0.74	+0.0
152,991	-		GFF156	0.74	+0.4
152,995	+		GFF156	0.74	-0.1
153,001	+		GFF156	0.75	-1.7
153,054	-		GFF156	0.78	-0.6
153,106	+		GFF156	0.80	-1.7
153,114	-		GFF156	0.81	+0.2
153,120	+		GFF156	0.81	+0.3
153,120	+		GFF156	0.81	-0.9
153,128	+		GFF156	0.82	-0.4
153,128	-		GFF156	0.82	+0.0
153,128	-		GFF156	0.82	+0.3
153,145	+		GFF156	0.83	-0.9
153,151	-		GFF156	0.83	-0.5
153,203	+		GFF156	0.86	-1.1
153,203	+		GFF156	0.86	-1.0
153,217	-		GFF156	0.87	-0.6
153,220	+		GFF156	0.87	+0.3
153,221	+		GFF156	0.87	-0.4
153,221	-		GFF156	0.87	-1.0
153,223	-		GFF156	0.87	+0.8
153,256	+		GFF156	0.89	+0.5
153,269	+		GFF156	0.89	-1.0
153,299	+				-2.1
153,302	-				+0.8
153,304	-				+0.9
153,307	-				+0.2
153,322	-				-0.2
153,324	+				-0.9
153,327	-				-0.3
153,399	+				+0.8
153,415	+				-0.3
153,420	+				-1.4
153,426	+				-0.2
153,428	+				+0.8
153,443	-				+0.7
153,453	-				+0.5
153,454	+				+1.5
153,459	+				+0.5
153,459	+				-2.0
153,467	-				-0.8
153,478	-				-0.5
153,479	+				-0.1
153,479	+				+0.2
153,487	-				-0.8
153,500	+		GFF157	0.12	-0.4
153,563	+		GFF157	0.27	-1.4
153,576	-		GFF157	0.30	-0.2
153,583	+		GFF157	0.31	-1.9
153,593	+		GFF157	0.34	+0.5
153,593	-		GFF157	0.34	-0.6
153,610	+		GFF157	0.37	+0.6
153,610	-		GFF157	0.37	-1.6
153,630	+		GFF157	0.42	-0.2
153,636	+		GFF157	0.43	-2.1
153,639	+		GFF157	0.44	-1.2
153,682	+		GFF157	0.54	-1.0
153,682	+		GFF157	0.54	+0.6
153,682	+		GFF157	0.54	-1.3
153,682	+		GFF157	0.54	+0.0
153,682	+		GFF157	0.54	-0.6
153,688	-		GFF157	0.55	-1.5
153,690	-		GFF157	0.56	+0.6
153,690	-		GFF157	0.56	-0.3
153,690	-		GFF157	0.56	-2.5
153,690	-		GFF157	0.56	-0.0
153,690	-		GFF157	0.56	+0.8
153,690	-		GFF157	0.56	+1.7
153,690	-		GFF157	0.56	-0.2
153,690	-		GFF157	0.56	-0.4
153,710	+		GFF157	0.60	-0.5
153,715	+		GFF157	0.62	+1.2
153,715	+		GFF157	0.62	-1.7
153,720	+		GFF157	0.63	+0.1
153,720	+		GFF157	0.63	-0.6
153,720	+		GFF157	0.63	+1.3
153,720	+		GFF157	0.63	-0.1
153,720	+		GFF157	0.63	-1.2
153,720	+		GFF157	0.63	-1.7
153,720	+		GFF157	0.63	+0.5
153,720	+		GFF157	0.63	-0.4
153,720	+		GFF157	0.63	+0.8
153,720	+		GFF157	0.63	-0.4
153,720	+		GFF157	0.63	+0.1
153,720	+		GFF157	0.63	+0.7
153,720	+		GFF157	0.63	-1.2
153,720	+		GFF157	0.63	+1.1
153,722	+		GFF157	0.63	+0.6
153,728	-		GFF157	0.65	+1.0
153,728	-		GFF157	0.65	-0.5
153,728	-		GFF157	0.65	+0.2
153,728	-		GFF157	0.65	-1.1
153,728	-		GFF157	0.65	-1.7
153,728	-		GFF157	0.65	+1.3
153,728	-		GFF157	0.65	-0.2
153,728	-		GFF157	0.65	-0.5
153,728	-		GFF157	0.65	-1.2
153,730	+		GFF157	0.65	-0.7
153,730	+		GFF157	0.65	-1.1
153,730	+		GFF157	0.65	+0.2
153,730	+		GFF157	0.65	-1.2
153,730	+		GFF157	0.65	-0.2
153,730	+		GFF157	0.65	-0.9
153,730	+		GFF157	0.65	-1.7
153,730	+		GFF157	0.65	-1.4
153,730	+		GFF157	0.65	+0.1
153,730	+		GFF157	0.65	-0.1
153,730	+		GFF157	0.65	+0.3
153,730	+		GFF157	0.65	+0.2
153,730	+		GFF157	0.65	-0.5
153,730	+		GFF157	0.65	-1.0
153,730	+		GFF157	0.65	-0.8
153,738	-		GFF157	0.67	-0.9
153,738	-		GFF157	0.67	-0.5
153,738	-		GFF157	0.67	-1.6
153,738	-		GFF157	0.67	-0.2
153,738	-		GFF157	0.67	-0.4
153,738	-		GFF157	0.67	+0.1
153,738	-		GFF157	0.67	-1.9
153,738	-		GFF157	0.67	-0.8
153,738	-		GFF157	0.67	-0.9
153,738	-		GFF157	0.67	-1.5
153,738	-		GFF157	0.67	-0.8
153,738	-		GFF157	0.67	-1.0
153,738	-		GFF157	0.67	+0.5
153,738	-		GFF157	0.67	-0.4
153,738	-		GFF157	0.67	-0.6
153,738	-		GFF157	0.67	+1.1
153,738	-		GFF157	0.67	-3.0
153,770	+		GFF157	0.74	+0.7
153,771	+		GFF157	0.74	+1.6
153,772	+		GFF157	0.75	-0.4
153,779	-		GFF157	0.76	+0.6
153,786	-		GFF157	0.78	-1.5
153,788	-		GFF157	0.78	-0.8
153,790	+		GFF157	0.79	-2.0
153,790	+		GFF157	0.79	-1.5
153,790	+		GFF157	0.79	+0.3
153,790	+		GFF157	0.79	-1.7
153,795	+		GFF157	0.80	-0.9
153,795	+		GFF157	0.80	-1.3
153,795	+		GFF157	0.80	+0.5
153,798	-		GFF157	0.81	+0.2
153,798	-		GFF157	0.81	+1.0
153,798	-		GFF157	0.81	-0.8
153,798	-		GFF157	0.81	-1.5
153,798	-		GFF157	0.81	-2.5
153,799	+		GFF157	0.81	-1.4
153,800	+		GFF157	0.81	-1.7
153,817	-		GFF157	0.85	-0.0
153,833	+		GFF157	0.89	-1.5
153,859	+				+1.0
153,888	+				-0.2
153,896	-				-1.2
153,926	+				-0.6
153,926	+				-1.4
153,939	-				+0.6
153,941	-				+0.9
153,970	+				-0.2
153,971	+				-1.9
153,978	-				+1.0
153,988	+				-0.6
153,996	-				+0.4
154,002	-				+0.3
154,021	+				+0.6
154,035	+				+0.0
154,035	+				+0.0
154,043	-				+0.9
154,043	-				-0.9
154,043	-				-0.9
154,050	+				-1.7
154,050	-				+0.5
154,061	+				-1.2
154,069	-				-2.4
154,085	+				+0.6
154,085	+				+0.6
154,085	+				-0.1
154,085	+				-0.3
154,090	+				-0.7
154,093	-				-2.3
154,093	-				-0.2
154,093	-				-0.2
154,097	+				-0.1
154,105	-				-1.0
154,115	+				-1.7
154,123	-				-0.8
154,151	+		GFF158	0.11	-0.8
154,159	-		GFF158	0.11	+0.6
154,170	+		GFF158	0.12	-1.9
154,170	+		GFF158	0.12	-2.4
154,170	+		GFF158	0.12	+1.0
154,178	-		GFF158	0.12	-0.5
154,178	-		GFF158	0.12	-0.2
154,178	-		GFF158	0.12	-1.9
154,221	-		GFF158	0.14	-0.2
154,221	-		GFF158	0.14	-0.4
154,228	-		GFF158	0.14	-0.9
154,246	+		GFF158	0.15	+1.6
154,246	+		GFF158	0.15	-0.7
154,254	-		GFF158	0.16	+0.2
154,254	-		GFF158	0.16	-1.0
154,254	-		GFF158	0.16	-0.6
154,255	+		GFF158	0.16	+0.5
154,255	+		GFF158	0.16	+0.6
154,255	+		GFF158	0.16	-1.4
154,263	-		GFF158	0.16	+0.0
154,263	-		GFF158	0.16	-0.7
154,275	+		GFF158	0.17	+0.6
154,305	+		GFF158	0.18	-0.7
154,305	+		GFF158	0.18	-0.1
154,324	+		GFF158	0.19	-1.0
154,332	+		GFF158	0.19	+0.3
154,332	-		GFF158	0.19	-0.4
154,340	+		GFF158	0.20	+0.1
154,348	-		GFF158	0.20	+0.6
154,352	+		GFF158	0.20	+1.5
154,363	+		GFF158	0.21	+0.1
154,363	+		GFF158	0.21	-0.5
154,371	-		GFF158	0.21	-0.1
154,371	-		GFF158	0.21	-2.2
154,377	-		GFF158	0.22	+1.4
154,377	-		GFF158	0.22	-1.0
154,383	+		GFF158	0.22	+1.1
154,395	-		GFF158	0.22	+0.6
154,402	+		GFF158	0.23	-0.4
154,402	+		GFF158	0.23	-0.9
154,410	-		GFF158	0.23	-1.9
154,410	-		GFF158	0.23	+0.3
154,410	-		GFF158	0.23	-0.0
154,415	-		GFF158	0.23	+1.0
154,420	-		GFF158	0.24	+1.6
154,434	+		GFF158	0.24	+0.2
154,434	+		GFF158	0.24	-2.2
154,446	-		GFF158	0.25	-2.3
154,446	-		GFF158	0.25	+0.1
154,468	-		GFF158	0.26	+0.4
154,491	+		GFF158	0.27	-0.0
154,491	+		GFF158	0.27	-0.7
154,497	-		GFF158	0.27	-1.6
154,499	+		GFF158	0.27	+0.3
154,507	-		GFF158	0.28	-0.3
154,538	+		GFF158	0.29	-0.8
154,544	-		GFF158	0.29	-2.7
154,546	-		GFF158	0.30	-0.1
154,551	-		GFF158	0.30	+0.4
154,551	-		GFF158	0.30	+0.6
154,557	+		GFF158	0.30	+0.8
154,565	-		GFF158	0.30	+0.1
154,599	+		GFF158	0.32	-0.1
154,604	+		GFF158	0.32	-0.3
154,606	-		GFF158	0.32	-0.3
154,612	-		GFF158	0.33	+0.5
154,614	+		GFF158	0.33	+0.6
154,614	+		GFF158	0.33	-2.0
154,622	-		GFF158	0.33	+0.1
154,622	-		GFF158	0.33	+0.1
154,622	-		GFF158	0.33	-0.6
154,622	-		GFF158	0.33	-1.2
154,622	-		GFF158	0.33	+0.3
154,623	-		GFF158	0.33	-1.1
154,623	-		GFF158	0.33	-0.2
154,644	+		GFF158	0.34	-0.5
154,644	+		GFF158	0.34	+0.1
154,644	+		GFF158	0.34	-0.8
154,644	+		GFF158	0.34	-0.5
154,644	+		GFF158	0.34	-2.6
154,644	+		GFF158	0.34	-1.2
154,644	+		GFF158	0.34	-1.4
154,644	+		GFF158	0.34	+0.2
154,644	+		GFF158	0.34	-0.7
154,644	+		GFF158	0.34	-0.1
154,644	+		GFF158	0.34	-1.3
154,644	+		GFF158	0.34	-0.1
154,644	+		GFF158	0.34	-1.1
154,644	+		GFF158	0.34	-0.2
154,644	+		GFF158	0.34	-1.3
154,644	+		GFF158	0.34	+1.2
154,652	-		GFF158	0.35	+0.5
154,652	-		GFF158	0.35	-1.8
154,652	-		GFF158	0.35	-0.8
154,652	-		GFF158	0.35	-0.8
154,652	-		GFF158	0.35	-0.9
154,652	-		GFF158	0.35	-0.6
154,652	-		GFF158	0.35	-1.3
154,652	-		GFF158	0.35	-0.2
154,652	-		GFF158	0.35	-0.2
154,652	-		GFF158	0.35	-1.9
154,663	-		GFF158	0.35	-0.9
154,675	+		GFF158	0.36	-0.6
154,677	+		GFF158	0.36	-1.4
154,685	-		GFF158	0.36	-0.1
154,697	+		GFF158	0.37	-0.7
154,741	+		GFF158	0.39	+0.5
154,741	+		GFF158	0.39	+0.1
154,741	+		GFF158	0.39	+1.1
154,744	-		GFF158	0.39	-0.5
154,754	+		GFF158	0.39	+0.0
154,764	+		GFF158	0.40	-0.4
154,790	+		GFF158	0.41	-0.2
154,797	+		GFF158	0.41	-1.9
154,802	-		GFF158	0.42	+1.0
154,802	-		GFF158	0.42	+0.7
154,809	-		GFF158	0.42	+0.2
154,816	-		GFF158	0.42	-0.8
154,816	-		GFF158	0.42	+0.2
154,851	-		GFF158	0.44	+0.8
154,853	-		GFF158	0.44	+0.3
154,860	+		GFF158	0.44	-0.7
154,879	-		GFF158	0.45	-2.3
154,881	+		GFF158	0.45	-0.4
154,881	-		GFF158	0.45	-0.8