Strain Fitness in Sphingobium sp. HT1-2 around GFF1569

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,595,745	-		GFF1568	0.12	+0.4
1,595,756	-		GFF1568	0.14	+1.4
1,595,776	-		GFF1568	0.16	+0.9
1,595,789	+		GFF1568	0.17	+1.8
1,595,838	-		GFF1568	0.22	-0.6
1,595,853	+		GFF1568	0.24	-0.4
1,595,880	+		GFF1568	0.27	-0.3
1,595,894	+		GFF1568	0.28	-1.4
1,595,907	+		GFF1568	0.30	-1.6
1,595,910	-		GFF1568	0.30	-2.0
1,595,910	-		GFF1568	0.30	-1.0
1,595,915	-		GFF1568	0.31	+0.4
1,595,915	-		GFF1568	0.31	-0.2
1,595,915	-		GFF1568	0.31	-0.8
1,595,940	-		GFF1568	0.33	-0.2
1,595,947	+		GFF1568	0.34	+0.3
1,595,977	+		GFF1568	0.37	-0.0
1,595,994	-		GFF1568	0.39	+0.8
1,596,006	-		GFF1568	0.40	-2.1
1,596,015	+		GFF1568	0.41	-1.2
1,596,023	-		GFF1568	0.42	+0.8
1,596,058	+		GFF1568	0.46	+0.6
1,596,066	-		GFF1568	0.47	-0.2
1,596,085	-		GFF1568	0.49	-1.0
1,596,095	-		GFF1568	0.50	-0.1
1,596,106	+		GFF1568	0.51	-0.0
1,596,106	+		GFF1568	0.51	+0.1
1,596,106	+		GFF1568	0.51	-0.8
1,596,106	+		GFF1568	0.51	-0.7
1,596,114	-		GFF1568	0.52	+0.6
1,596,114	-		GFF1568	0.52	+0.5
1,596,114	-		GFF1568	0.52	+0.1
1,596,114	-		GFF1568	0.52	-2.1
1,596,114	-		GFF1568	0.52	-1.4
1,596,114	-		GFF1568	0.52	-0.3
1,596,114	-		GFF1568	0.52	+0.6
1,596,114	-		GFF1568	0.52	-0.0
1,596,114	-		GFF1568	0.52	-0.9
1,596,114	-		GFF1568	0.52	-0.0
1,596,126	-		GFF1568	0.53	-1.8
1,596,207	-		GFF1568	0.62	+0.0
1,596,211	-		GFF1568	0.62	-1.5
1,596,242	+		GFF1568	0.66	-1.4
1,596,248	-		GFF1568	0.66	-0.2
1,596,250	+		GFF1568	0.66	-1.0
1,596,278	-		GFF1568	0.69	+0.7
1,596,292	+		GFF1568	0.71	-1.1
1,596,292	+		GFF1568	0.71	-0.6
1,596,297	+		GFF1568	0.71	-0.1
1,596,297	+		GFF1568	0.71	-0.7
1,596,297	+		GFF1568	0.71	+0.3
1,596,297	+		GFF1568	0.71	-0.9
1,596,297	+		GFF1568	0.71	+0.8
1,596,297	+		GFF1568	0.71	-0.2
1,596,297	+		GFF1568	0.71	+0.4
1,596,297	+		GFF1568	0.71	-1.2
1,596,297	+		GFF1568	0.71	+1.3
1,596,297	+		GFF1568	0.71	+0.5
1,596,297	+		GFF1568	0.71	-0.9
1,596,300	-		GFF1568	0.72	-0.9
1,596,305	-		GFF1568	0.72	+1.0
1,596,305	-		GFF1568	0.72	-0.8
1,596,305	-		GFF1568	0.72	-1.0
1,596,305	-		GFF1568	0.72	+0.2
1,596,305	-		GFF1568	0.72	+0.1
1,596,305	-		GFF1568	0.72	-0.4
1,596,305	-		GFF1568	0.72	+0.3
1,596,305	-		GFF1568	0.72	+0.2
1,596,322	+		GFF1568	0.74	-1.1
1,596,364	-		GFF1568	0.79	-1.4
1,596,364	-		GFF1568	0.79	-0.0
1,596,393	+		GFF1568	0.82	-1.1
1,596,393	-		GFF1568	0.82	-0.1
1,596,393	-		GFF1568	0.82	-0.8
1,596,447	+		GFF1568	0.88	-0.7
1,596,447	+		GFF1568	0.88	+0.6
1,596,447	+		GFF1568	0.88	+1.0
1,596,455	-		GFF1568	0.88	-0.3
1,596,455	-		GFF1568	0.88	+0.1
1,596,455	-		GFF1568	0.88	+0.1
1,596,455	-		GFF1568	0.88	-1.2
1,596,495	+				+1.0
1,596,495	+				-0.2
1,596,505	+				-2.4
1,596,513	-				+0.0
1,596,559	+				-1.8
1,596,561	+				-0.6
1,596,596	-				-0.6
1,596,602	-				+0.1
1,596,622	-				+1.0
1,596,646	+				+0.3
1,596,673	+				+0.5
1,596,686	+				-1.6
1,596,686	+				-1.5
1,596,686	+				+0.0
1,596,694	-				-2.1
1,596,700	-				+0.2
1,596,716	-				-0.8
1,596,718	-				+0.3
1,596,734	+				+0.1
1,596,734	+				-1.1
1,596,760	-				+0.6
1,596,780	+				-1.2
1,596,790	-		GFF1569	0.11	-1.3
1,596,803	+		GFF1569	0.13	-2.5
1,596,824	-		GFF1569	0.16	-1.0
1,596,841	+		GFF1569	0.19	-1.6
1,596,849	-		GFF1569	0.20	-2.1
1,596,853	-		GFF1569	0.21	+0.2
1,596,853	-		GFF1569	0.21	-0.1
1,596,874	+		GFF1569	0.24	-0.8
1,596,908	+		GFF1569	0.29	+1.1
1,596,913	-		GFF1569	0.30	-1.5
1,596,923	+		GFF1569	0.32	+0.6
1,596,948	+		GFF1569	0.36	-1.6
1,596,948	+		GFF1569	0.36	-0.8
1,596,948	+		GFF1569	0.36	-0.5
1,596,948	+		GFF1569	0.36	-0.4
1,596,948	+		GFF1569	0.36	-1.7
1,596,948	+		GFF1569	0.36	-0.3
1,596,956	-		GFF1569	0.37	+0.6
1,596,956	-		GFF1569	0.37	-0.7
1,596,956	-		GFF1569	0.37	-1.5
1,596,956	-		GFF1569	0.37	-0.2
1,596,956	-		GFF1569	0.37	-0.6
1,596,956	-		GFF1569	0.37	-0.1
1,596,956	-		GFF1569	0.37	-0.5
1,596,956	-		GFF1569	0.37	-0.4
1,596,958	+		GFF1569	0.37	+0.9
1,596,958	+		GFF1569	0.37	+0.4
1,596,958	+		GFF1569	0.37	+0.7
1,596,958	+		GFF1569	0.37	-0.6
1,596,958	+		GFF1569	0.37	-0.0
1,596,958	+		GFF1569	0.37	-0.8
1,596,958	+		GFF1569	0.37	-1.5
1,596,958	+		GFF1569	0.37	-1.2
1,596,958	+		GFF1569	0.37	+0.3
1,596,966	-		GFF1569	0.39	+0.1
1,596,966	-		GFF1569	0.39	-2.0
1,596,966	-		GFF1569	0.39	+1.2
1,596,966	-		GFF1569	0.39	-0.6
1,596,966	-		GFF1569	0.39	-1.1
1,596,966	-		GFF1569	0.39	+0.5
1,596,966	-		GFF1569	0.39	+0.4
1,596,969	+		GFF1569	0.39	+0.7
1,596,969	+		GFF1569	0.39	-1.2
1,596,971	-		GFF1569	0.39	+0.8
1,596,973	+		GFF1569	0.40	-0.1
1,596,977	-		GFF1569	0.40	-1.4
1,596,983	+		GFF1569	0.41	+0.7
1,597,006	-		GFF1569	0.45	+0.4
1,597,020	-		GFF1569	0.47	+1.5
1,597,076	-		GFF1569	0.56	+0.4
1,597,091	+		GFF1569	0.58	-2.2
1,597,145	+		GFF1569	0.67	-2.0
1,597,145	+		GFF1569	0.67	-0.9
1,597,145	+		GFF1569	0.67	-0.4
1,597,148	-		GFF1569	0.67	-1.2
1,597,151	+		GFF1569	0.68	-1.4
1,597,153	-		GFF1569	0.68	+0.1
1,597,153	-		GFF1569	0.68	-0.2
1,597,173	-		GFF1569	0.71	-0.1
1,597,178	+		GFF1569	0.72	-0.6
1,597,186	+		GFF1569	0.73	-1.2
1,597,191	-		GFF1569	0.74	-0.5
1,597,242	+		GFF1569	0.82	-1.5
1,597,249	-		GFF1569	0.83	+0.9
1,597,249	-		GFF1569	0.83	+0.5
1,597,255	+		GFF1569	0.84	+0.6
1,597,255	+		GFF1569	0.84	-0.6
1,597,255	+		GFF1569	0.84	-0.1
1,597,255	+		GFF1569	0.84	+1.1
1,597,255	+		GFF1569	0.84	+0.7
1,597,255	+		GFF1569	0.84	-0.5
1,597,255	+		GFF1569	0.84	-0.0
1,597,263	-		GFF1569	0.85	-0.1
1,597,263	-		GFF1569	0.85	-0.6
1,597,270	-		GFF1569	0.87	+0.7
1,597,282	-		GFF1569	0.88	-0.4
1,597,284	+		GFF1569	0.89	+0.5
1,597,284	+		GFF1569	0.89	-0.0
1,597,284	+		GFF1569	0.89	-1.2
1,597,290	+		GFF1569	0.90	-0.5
1,597,290	+		GFF1569	0.90	+1.4
1,597,301	+				-0.9
1,597,324	+				-0.0
1,597,332	-				+0.2
1,597,341	-				+0.8
1,597,343	+				-0.7
1,597,345	+				-1.1
1,597,351	-				+0.6
1,597,351	-				-0.4
1,597,355	+				-0.2
1,597,369	+				+1.1
1,597,391	+				+0.1
1,597,402	+				+0.2
1,597,405	-				-2.0
1,597,410	-				-0.1
1,597,418	-				-0.1
1,597,430	+				-2.1
1,597,460	-				-1.5
1,597,462	+				+0.8
1,597,462	+				+0.7
1,597,462	+				+0.3
1,597,462	+				+0.1
1,597,462	+				-1.8
1,597,470	-				+1.2
1,597,470	-				+1.2
1,597,470	-				+0.8
1,597,470	-				+1.3
1,597,483	+		GFF1570	0.12	+0.3
1,597,483	+		GFF1570	0.12	-1.5
1,597,483	+		GFF1570	0.12	-0.4
1,597,483	+		GFF1570	0.12	-1.5
1,597,483	+		GFF1570	0.12	-1.6
1,597,483	+		GFF1570	0.12	+0.5
1,597,491	-		GFF1570	0.13	+1.1
1,597,491	-		GFF1570	0.13	+0.1
1,597,499	+		GFF1570	0.14	+0.1
1,597,504	+		GFF1570	0.15	+0.2
1,597,506	-		GFF1570	0.15	+0.2
1,597,507	+		GFF1570	0.16	-1.0
1,597,507	+		GFF1570	0.16	+0.7
1,597,507	+		GFF1570	0.16	-0.8
1,597,507	-		GFF1570	0.16	+1.3
1,597,507	-		GFF1570	0.16	-0.1
1,597,515	-		GFF1570	0.17	+0.1
1,597,515	-		GFF1570	0.17	-0.8
1,597,520	-		GFF1570	0.18	+0.7
1,597,528	+		GFF1570	0.19	-0.1
1,597,538	+		GFF1570	0.20	-1.0
1,597,554	-		GFF1570	0.23	+0.6
1,597,611	-		GFF1570	0.32	-0.3
1,597,616	-		GFF1570	0.33	-1.5
1,597,728	-		GFF1570	0.51	+0.4
1,597,755	+		GFF1570	0.55	-1.3
1,597,755	+		GFF1570	0.55	-1.3
1,597,760	+		GFF1570	0.56	+1.0
1,597,763	-		GFF1570	0.56	+0.3
1,597,768	-		GFF1570	0.57	+0.4
1,597,768	-		GFF1570	0.57	-2.4
1,597,770	+		GFF1570	0.57	-0.1
1,597,770	+		GFF1570	0.57	-0.7
1,597,771	+		GFF1570	0.57	+0.5
1,597,771	+		GFF1570	0.57	+0.1
1,597,778	-		GFF1570	0.59	+0.9
1,597,778	-		GFF1570	0.59	+1.0
1,597,779	-		GFF1570	0.59	+0.9
1,597,814	+		GFF1570	0.64	+1.2
1,597,814	+		GFF1570	0.64	+0.3
1,597,814	+		GFF1570	0.64	+0.5
1,597,830	-		GFF1570	0.67	+0.6
1,597,840	+		GFF1570	0.68	-0.5
1,597,840	+		GFF1570	0.68	+0.7
1,597,848	-		GFF1570	0.70	-0.4
1,597,851	+		GFF1570	0.70	-2.5
1,597,875	+		GFF1570	0.74	-0.4
1,597,878	+		GFF1570	0.74	+0.8
1,597,883	-		GFF1570	0.75	+1.2
1,597,912	+		GFF1570	0.80	-0.6
1,597,915	-		GFF1570	0.80	+0.8
1,597,920	-		GFF1570	0.81	+0.5
1,597,920	-		GFF1570	0.81	+0.2
1,597,935	-		GFF1570	0.83	-0.8
1,597,935	-		GFF1570	0.83	+0.4
1,597,944	-		GFF1570	0.85	-0.0
1,597,994	+				+0.7
1,598,035	+				-0.9
1,598,038	-				-0.4
1,598,048	-				-0.1
1,598,072	-				-0.0
1,598,097	+				+0.1
1,598,106	+				-0.4
1,598,106	+				+0.8
1,598,131	-				+0.1
1,598,143	+				+1.0
1,598,143	+				-0.4
1,598,184	+				-0.2
1,598,235	+				+1.2
1,598,243	-				-0.3
1,598,243	-				-0.1
1,598,246	+				-0.3
1,598,246	+				-0.3
1,598,254	-				-1.4
1,598,267	+				-1.6
1,598,275	-				+0.8
1,598,290	-		GFF1571	0.11	-1.6
1,598,317	+		GFF1571	0.13	+1.2
1,598,318	+		GFF1571	0.13	+0.4
1,598,351	-		GFF1571	0.16	-1.2
1,598,351	-		GFF1571	0.16	-0.0
1,598,354	+		GFF1571	0.16	-1.1