Strain Fitness in Sphingobium sp. HT1-2 around GFF1530

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,559,622	-		GFF1528	0.71	-2.5
1,559,651	+		GFF1528	0.75	-1.5
1,559,703	+		GFF1528	0.81	-1.0
1,559,711	-		GFF1528	0.82	-0.0
1,559,711	-		GFF1528	0.82	-0.8
1,559,711	-		GFF1528	0.82	-0.1
1,559,711	-		GFF1528	0.82	-0.3
1,559,713	+		GFF1528	0.83	+0.8
1,559,745	-		GFF1528	0.87	+0.4
1,559,747	+		GFF1528	0.87	+1.1
1,559,756	+		GFF1528	0.88	-1.1
1,559,764	-		GFF1528	0.89	+0.9
1,559,775	-				-0.2
1,559,793	+				+0.0
1,559,796	-				-1.2
1,559,803	+				+0.6
1,559,803	+				+1.3
1,559,817	-				+0.4
1,559,823	+				-0.1
1,559,846	+				+0.7
1,559,846	+				-0.3
1,559,846	+				-1.3
1,559,846	+				-1.0
1,559,854	-				+0.0
1,559,854	-				+1.0
1,559,854	-				-0.1
1,559,854	-				-0.5
1,559,855	+				-0.1
1,559,863	-				+0.2
1,559,870	+				-1.1
1,559,878	-				+0.1
1,559,878	-				+0.5
1,559,880	-				+0.1
1,559,913	-				-1.8
1,559,932	+				-0.6
1,559,935	-		GFF1529	0.10	-1.2
1,559,940	-		GFF1529	0.11	+0.5
1,559,940	-		GFF1529	0.11	+0.9
1,559,957	+		GFF1529	0.13	-1.3
1,559,957	+		GFF1529	0.13	-0.5
1,560,011	+		GFF1529	0.20	-0.7
1,560,011	+		GFF1529	0.20	+0.2
1,560,011	+		GFF1529	0.20	-0.8
1,560,011	+		GFF1529	0.20	+0.9
1,560,019	-		GFF1529	0.21	-0.7
1,560,019	-		GFF1529	0.21	-1.8
1,560,059	+		GFF1529	0.27	-2.1
1,560,111	+		GFF1529	0.33	-0.3
1,560,111	+		GFF1529	0.33	-0.8
1,560,119	-		GFF1529	0.35	-0.6
1,560,119	-		GFF1529	0.35	-0.1
1,560,119	-		GFF1529	0.35	-0.3
1,560,120	+		GFF1529	0.35	+0.3
1,560,120	+		GFF1529	0.35	+0.4
1,560,121	+		GFF1529	0.35	-1.6
1,560,128	-		GFF1529	0.36	-1.8
1,560,128	-		GFF1529	0.36	+1.0
1,560,159	+		GFF1529	0.40	-0.2
1,560,159	+		GFF1529	0.40	-1.1
1,560,159	+		GFF1529	0.40	-0.2
1,560,167	-		GFF1529	0.41	-0.4
1,560,167	-		GFF1529	0.41	+0.9
1,560,167	-		GFF1529	0.41	-0.9
1,560,172	-		GFF1529	0.42	-0.1
1,560,181	+		GFF1529	0.43	+0.9
1,560,227	+		GFF1529	0.49	-0.7
1,560,229	-		GFF1529	0.49	+0.5
1,560,232	+		GFF1529	0.49	-0.9
1,560,240	-		GFF1529	0.51	-0.8
1,560,249	+		GFF1529	0.52	-0.1
1,560,257	-		GFF1529	0.53	-1.3
1,560,282	-		GFF1529	0.56	+0.8
1,560,297	+		GFF1529	0.58	+0.1
1,560,298	-		GFF1529	0.58	+0.7
1,560,306	-		GFF1529	0.59	+0.5
1,560,324	+		GFF1529	0.62	-2.0
1,560,337	-		GFF1529	0.63	+0.2
1,560,342	+		GFF1529	0.64	-0.6
1,560,342	+		GFF1529	0.64	-2.1
1,560,342	+		GFF1529	0.64	-0.2
1,560,342	+		GFF1529	0.64	-0.7
1,560,342	+		GFF1529	0.64	-0.2
1,560,342	+		GFF1529	0.64	-0.8
1,560,343	-		GFF1529	0.64	-0.6
1,560,350	-		GFF1529	0.65	-1.8
1,560,350	-		GFF1529	0.65	-2.4
1,560,350	-		GFF1529	0.65	+0.2
1,560,350	-		GFF1529	0.65	+1.7
1,560,350	-		GFF1529	0.65	-1.3
1,560,354	+		GFF1529	0.66	+0.3
1,560,355	-		GFF1529	0.66	-1.7
1,560,362	-		GFF1529	0.67	-2.2
1,560,362	-		GFF1529	0.67	-2.1
1,560,430	-		GFF1529	0.76	-1.1
1,560,447	+		GFF1529	0.78	-1.8
1,560,447	+		GFF1529	0.78	+0.4
1,560,447	+		GFF1529	0.78	-0.2
1,560,460	+		GFF1529	0.80	-1.5
1,560,460	+		GFF1529	0.80	+0.2
1,560,460	+		GFF1529	0.80	-0.0
1,560,460	+		GFF1529	0.80	-0.6
1,560,460	+		GFF1529	0.80	+0.4
1,560,467	+		GFF1529	0.81	+0.2
1,560,468	-		GFF1529	0.81	-0.2
1,560,468	-		GFF1529	0.81	-0.2
1,560,494	-		GFF1529	0.84	-0.2
1,560,501	-		GFF1529	0.85	+1.2
1,560,503	+		GFF1529	0.85	+0.7
1,560,504	-		GFF1529	0.85	-1.0
1,560,512	+		GFF1529	0.87	+0.9
1,560,513	+		GFF1529	0.87	-0.1
1,560,513	+		GFF1529	0.87	-2.1
1,560,513	+		GFF1529	0.87	-0.5
1,560,513	+		GFF1529	0.87	-1.6
1,560,516	-		GFF1529	0.87	+0.4
1,560,523	+		GFF1529	0.88	-0.5
1,560,531	-		GFF1529	0.89	-0.8
1,560,531	-		GFF1529	0.89	+1.1
1,560,531	-		GFF1529	0.89	+0.2
1,560,548	+				-0.5
1,560,554	+				-0.4
1,560,556	-				-0.6
1,560,556	-				-1.8
1,560,556	-				-0.4
1,560,564	+				+0.2
1,560,564	+				-0.3
1,560,582	+				+0.4
1,560,582	+				-0.3
1,560,582	+				-0.6
1,560,582	+				+0.0
1,560,590	-				-0.9
1,560,590	-				-0.9
1,560,590	-				+1.2
1,560,590	-				+0.2
1,560,593	+				-0.8
1,560,608	+				-1.7
1,560,616	-				-1.6
1,560,632	+				-1.5
1,560,632	+				+0.3
1,560,632	+				+0.1
1,560,632	+				-0.2
1,560,632	+				-1.2
1,560,632	+				-1.1
1,560,632	+				-1.7
1,560,632	+				-1.6
1,560,637	+				+1.0
1,560,637	+				-0.1
1,560,640	-				-0.5
1,560,640	-				+0.7
1,560,640	-				-1.7
1,560,645	-				+0.2
1,560,645	-				-0.7
1,560,646	-				-0.4
1,560,650	-				+1.2
1,560,660	-				+0.3
1,560,684	+				-0.6
1,560,695	+		GFF1530	0.11	-1.3
1,560,708	-		GFF1530	0.12	-0.3
1,560,714	+		GFF1530	0.13	+0.3
1,560,744	+		GFF1530	0.17	-0.5
1,560,744	+		GFF1530	0.17	-0.1
1,560,744	+		GFF1530	0.17	+0.2
1,560,744	+		GFF1530	0.17	+1.1
1,560,744	+		GFF1530	0.17	-0.3
1,560,744	+		GFF1530	0.17	+1.4
1,560,752	-		GFF1530	0.18	+0.0
1,560,763	-		GFF1530	0.19	+0.2
1,560,801	+		GFF1530	0.24	-1.5
1,560,858	+		GFF1530	0.31	+0.2
1,560,859	+		GFF1530	0.31	-2.0
1,560,864	+		GFF1530	0.31	-0.8
1,560,866	-		GFF1530	0.32	-0.1
1,560,866	-		GFF1530	0.32	+0.3
1,560,866	-		GFF1530	0.32	+0.6
1,560,874	+		GFF1530	0.33	+0.1
1,560,904	-		GFF1530	0.36	-0.3
1,560,912	+		GFF1530	0.37	-0.1
1,560,912	+		GFF1530	0.37	+0.6
1,560,912	+		GFF1530	0.37	-1.5
1,560,912	+		GFF1530	0.37	+0.5
1,560,912	+		GFF1530	0.37	+0.8
1,560,912	+		GFF1530	0.37	+0.2
1,560,913	-		GFF1530	0.38	-0.2
1,560,917	+		GFF1530	0.38	-0.1
1,560,917	+		GFF1530	0.38	+1.4
1,560,920	-		GFF1530	0.38	-0.5
1,560,920	-		GFF1530	0.38	-0.8
1,560,920	-		GFF1530	0.38	+0.7
1,560,922	+		GFF1530	0.39	+0.1
1,560,927	+		GFF1530	0.39	-2.1
1,560,927	+		GFF1530	0.39	-1.4
1,560,927	+		GFF1530	0.39	-1.3
1,560,930	-		GFF1530	0.40	-0.4
1,560,935	-		GFF1530	0.40	-0.2
1,560,935	-		GFF1530	0.40	+0.2
1,560,953	+		GFF1530	0.43	+0.9
1,560,955	+		GFF1530	0.43	+0.5
1,560,955	+		GFF1530	0.43	+0.2
1,560,955	+		GFF1530	0.43	+0.0
1,560,955	+		GFF1530	0.43	+0.5
1,560,956	-		GFF1530	0.43	+0.4
1,560,963	-		GFF1530	0.44	-0.2
1,560,963	-		GFF1530	0.44	-0.2
1,560,963	-		GFF1530	0.44	-0.2
1,560,963	-		GFF1530	0.44	-1.6
1,560,963	-		GFF1530	0.44	+0.7
1,560,982	+		GFF1530	0.46	-0.0
1,560,982	+		GFF1530	0.46	+0.1
1,560,982	+		GFF1530	0.46	+0.0
1,560,982	+		GFF1530	0.46	-0.9
1,560,982	+		GFF1530	0.46	-0.0
1,560,982	+		GFF1530	0.46	-0.8
1,560,982	+		GFF1530	0.46	-0.5
1,560,982	+		GFF1530	0.46	-0.6
1,560,982	+		GFF1530	0.46	-0.0
1,560,982	+		GFF1530	0.46	-1.3
1,560,982	+		GFF1530	0.46	+0.3
1,560,982	+		GFF1530	0.46	+0.5
1,560,982	+		GFF1530	0.46	+0.7
1,560,982	+		GFF1530	0.46	+0.8
1,560,982	+		GFF1530	0.46	-0.6
1,560,982	+		GFF1530	0.46	-1.2
1,560,990	-		GFF1530	0.47	-1.2
1,560,990	-		GFF1530	0.47	-0.2
1,560,990	-		GFF1530	0.47	+0.0
1,560,990	-		GFF1530	0.47	+0.7
1,560,990	-		GFF1530	0.47	+1.1
1,560,990	-		GFF1530	0.47	-0.9
1,560,990	-		GFF1530	0.47	-0.3
1,560,990	-		GFF1530	0.47	-2.0
1,560,990	-		GFF1530	0.47	-1.2
1,560,990	-		GFF1530	0.47	+0.7
1,560,990	-		GFF1530	0.47	-1.1
1,560,990	-		GFF1530	0.47	+1.4
1,560,990	-		GFF1530	0.47	-0.5
1,560,990	-		GFF1530	0.47	-0.9
1,560,990	-		GFF1530	0.47	+0.4
1,560,995	-		GFF1530	0.48	+1.0
1,560,995	-		GFF1530	0.48	+0.7
1,560,995	-		GFF1530	0.48	+0.2
1,560,997	+		GFF1530	0.48	-0.9
1,560,997	+		GFF1530	0.48	-0.7
1,560,997	+		GFF1530	0.48	-0.3
1,560,997	+		GFF1530	0.48	-1.3
1,561,007	+		GFF1530	0.49	+0.9
1,561,007	+		GFF1530	0.49	-0.2
1,561,015	-		GFF1530	0.50	+0.2
1,561,015	-		GFF1530	0.50	+0.9
1,561,036	-		GFF1530	0.53	+0.0
1,561,050	+		GFF1530	0.55	-0.7
1,561,056	+		GFF1530	0.55	-0.3
1,561,056	+		GFF1530	0.55	-1.2
1,561,056	+		GFF1530	0.55	+0.5
1,561,056	+		GFF1530	0.55	-0.9
1,561,056	+		GFF1530	0.55	-0.8
1,561,056	+		GFF1530	0.55	-0.5
1,561,056	+		GFF1530	0.55	-0.4
1,561,059	-		GFF1530	0.56	-0.5
1,561,059	-		GFF1530	0.56	+0.5
1,561,059	-		GFF1530	0.56	-0.5
1,561,061	+		GFF1530	0.56	+0.1
1,561,061	+		GFF1530	0.56	+0.5
1,561,061	+		GFF1530	0.56	+0.0
1,561,061	+		GFF1530	0.56	+0.1
1,561,064	-		GFF1530	0.56	-0.6
1,561,064	-		GFF1530	0.56	+0.1
1,561,064	-		GFF1530	0.56	-0.4
1,561,069	-		GFF1530	0.57	-3.1
1,561,090	+		GFF1530	0.59	+0.1
1,561,099	-		GFF1530	0.61	-1.3
1,561,105	-		GFF1530	0.61	+0.5
1,561,105	-		GFF1530	0.61	-0.5
1,561,107	+		GFF1530	0.62	-3.4
1,561,110	-		GFF1530	0.62	+0.4
1,561,112	+		GFF1530	0.62	-0.8
1,561,117	+		GFF1530	0.63	+0.2
1,561,124	+		GFF1530	0.64	-1.2
1,561,126	+		GFF1530	0.64	-1.9
1,561,126	+		GFF1530	0.64	-1.7
1,561,126	+		GFF1530	0.64	-0.6
1,561,131	+		GFF1530	0.65	+0.5
1,561,134	-		GFF1530	0.65	-0.1
1,561,134	-		GFF1530	0.65	-0.5
1,561,136	+		GFF1530	0.65	-0.7
1,561,136	+		GFF1530	0.65	-0.0
1,561,139	-		GFF1530	0.66	-0.6
1,561,144	-		GFF1530	0.66	-0.8
1,561,153	-		GFF1530	0.67	-0.2
1,561,155	+		GFF1530	0.68	-2.5
1,561,163	-		GFF1530	0.69	-0.3
1,561,171	+		GFF1530	0.70	-0.1
1,561,171	+		GFF1530	0.70	-0.2
1,561,178	+		GFF1530	0.70	+0.5
1,561,193	-		GFF1530	0.72	+0.3
1,561,198	-		GFF1530	0.73	-0.6
1,561,215	+		GFF1530	0.75	+0.5
1,561,215	+		GFF1530	0.75	-1.2
1,561,229	+		GFF1530	0.77	+0.5
1,561,252	-		GFF1530	0.80	-1.8
1,561,267	-		GFF1530	0.81	+0.7
1,561,267	-		GFF1530	0.81	+0.1
1,561,305	-		GFF1530	0.86	-1.7
1,561,344	+				-0.2
1,561,371	+				+0.4
1,561,373	+				+1.4
1,561,373	+				-1.2
1,561,373	+				+0.9
1,561,373	+				+0.4
1,561,373	+				-1.8
1,561,376	-				-0.5
1,561,378	+				+0.4
1,561,378	+				-1.0
1,561,378	+				-2.4
1,561,381	-				-0.0
1,561,381	-				-0.0
1,561,381	-				-0.4
1,561,386	-				-1.0
1,561,386	-				-0.4
1,561,386	-				-0.0
1,561,386	-				-0.7
1,561,410	+				-0.9
1,561,410	+				+0.1
1,561,410	+				-1.2
1,561,410	+				-0.2
1,561,418	-				+0.3
1,561,418	-				-1.2
1,561,422	-				-1.3
1,561,443	+				-0.9
1,561,443	+				-0.7
1,561,443	-				-0.3
1,561,451	-				+1.0
1,561,451	-				-0.8
1,561,453	+				-1.3
1,561,461	-				-3.1
1,561,467	-				-1.0
1,561,479	+				-0.1
1,561,489	-				-1.0
1,561,489	-				-1.2
1,561,494	+				+0.7
1,561,514	+				-1.8
1,561,514	+				-1.2
1,561,522	-				-1.0
1,561,522	-				+0.0
1,561,522	-				+1.0
1,561,552	-				-0.5
1,561,552	-				+0.0
1,561,561	-				-1.0
1,561,561	-				-1.0
1,561,561	-				-1.6
1,561,561	-				-0.6
1,561,572	+		GFF1531	0.11	-0.0
1,561,572	+		GFF1531	0.11	+0.7
1,561,572	+		GFF1531	0.11	+0.3
1,561,572	+		GFF1531	0.11	+0.4
1,561,572	+		GFF1531	0.11	+0.2
1,561,572	+		GFF1531	0.11	+0.6
1,561,572	+		GFF1531	0.11	+0.6
1,561,580	-		GFF1531	0.11	+0.3
1,561,580	-		GFF1531	0.11	+0.2
1,561,580	-		GFF1531	0.11	-0.0
1,561,580	-		GFF1531	0.11	-0.8
1,561,580	-		GFF1531	0.11	-1.4
1,561,580	-		GFF1531	0.11	-1.6
1,561,591	-		GFF1531	0.12	-0.8
1,561,602	+		GFF1531	0.13	-1.6
1,561,602	+		GFF1531	0.13	-1.5
1,561,604	+		GFF1531	0.13	+0.1
1,561,639	+		GFF1531	0.15	-1.0
1,561,641	+		GFF1531	0.15	+0.0
1,561,641	+		GFF1531	0.15	-0.7
1,561,641	+		GFF1531	0.15	+1.0
1,561,646	+		GFF1531	0.16	+0.5
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