Strain Fitness in Sphingobium sp. HT1-2 around GFF1443

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,469,773	-		GFF1442	0.13	+0.2
1,469,784	+		GFF1442	0.14	+0.5
1,469,787	-		GFF1442	0.14	-0.7
1,469,792	-		GFF1442	0.15	+0.0
1,469,813	+		GFF1442	0.17	-0.6
1,469,821	-		GFF1442	0.17	+0.3
1,469,841	-		GFF1442	0.19	+0.8
1,469,861	+		GFF1442	0.21	+0.1
1,469,885	+		GFF1442	0.23	-1.3
1,469,885	+		GFF1442	0.23	+0.0
1,469,893	-		GFF1442	0.24	+0.8
1,469,900	+		GFF1442	0.24	+2.0
1,469,908	-		GFF1442	0.25	+0.2
1,469,908	-		GFF1442	0.25	-1.4
1,469,908	-		GFF1442	0.25	+0.5
1,469,954	-		GFF1442	0.29	-0.9
1,469,954	-		GFF1442	0.29	+0.4
1,469,962	+		GFF1442	0.30	+0.2
1,469,977	-		GFF1442	0.31	+0.4
1,469,977	-		GFF1442	0.31	+0.6
1,470,003	-		GFF1442	0.33	+1.0
1,470,003	-		GFF1442	0.33	+0.6
1,470,024	+		GFF1442	0.35	-1.2
1,470,027	-		GFF1442	0.35	+0.4
1,470,032	-		GFF1442	0.36	+0.1
1,470,037	+		GFF1442	0.36	+0.9
1,470,062	+		GFF1442	0.38	-0.7
1,470,062	+		GFF1442	0.38	-0.0
1,470,092	+		GFF1442	0.41	+0.6
1,470,112	+		GFF1442	0.43	+0.7
1,470,112	+		GFF1442	0.43	+0.2
1,470,120	-		GFF1442	0.43	+0.2
1,470,138	-		GFF1442	0.45	+0.5
1,470,140	+		GFF1442	0.45	-1.7
1,470,152	+		GFF1442	0.46	+0.5
1,470,164	+		GFF1442	0.47	+0.0
1,470,164	+		GFF1442	0.47	+0.8
1,470,164	+		GFF1442	0.47	+0.6
1,470,164	-		GFF1442	0.47	-0.4
1,470,164	-		GFF1442	0.47	+0.2
1,470,172	-		GFF1442	0.48	-0.2
1,470,172	-		GFF1442	0.48	-1.0
1,470,172	-		GFF1442	0.48	-0.1
1,470,192	-		GFF1442	0.50	+0.2
1,470,207	-		GFF1442	0.51	+0.2
1,470,227	-		GFF1442	0.53	-0.9
1,470,228	-		GFF1442	0.53	+0.4
1,470,243	-		GFF1442	0.54	-0.0
1,470,270	+		GFF1442	0.56	+0.8
1,470,285	+		GFF1442	0.58	-0.2
1,470,293	-		GFF1442	0.58	-0.1
1,470,293	-		GFF1442	0.58	-1.2
1,470,301	+		GFF1442	0.59	+0.1
1,470,301	+		GFF1442	0.59	-0.5
1,470,302	+		GFF1442	0.59	-0.0
1,470,308	+		GFF1442	0.60	-1.2
1,470,309	-		GFF1442	0.60	+1.1
1,470,310	-		GFF1442	0.60	+0.7
1,470,310	-		GFF1442	0.60	-1.5
1,470,310	-		GFF1442	0.60	+0.2
1,470,318	+		GFF1442	0.60	-0.2
1,470,325	+		GFF1442	0.61	+1.6
1,470,325	+		GFF1442	0.61	-0.5
1,470,325	+		GFF1442	0.61	-0.7
1,470,333	-		GFF1442	0.62	+0.2
1,470,333	-		GFF1442	0.62	+0.5
1,470,333	-		GFF1442	0.62	-1.7
1,470,333	-		GFF1442	0.62	+0.7
1,470,340	-		GFF1442	0.62	-1.1
1,470,340	-		GFF1442	0.62	+0.9
1,470,342	+		GFF1442	0.63	-0.3
1,470,347	+		GFF1442	0.63	-2.0
1,470,347	+		GFF1442	0.63	-1.4
1,470,347	+		GFF1442	0.63	+0.4
1,470,355	-		GFF1442	0.64	-1.9
1,470,383	+		GFF1442	0.66	-1.3
1,470,383	+		GFF1442	0.66	-1.0
1,470,409	-		GFF1442	0.68	+0.2
1,470,422	+		GFF1442	0.69	+0.2
1,470,439	+		GFF1442	0.71	-0.2
1,470,450	+		GFF1442	0.72	+1.4
1,470,455	+		GFF1442	0.72	-0.6
1,470,458	-		GFF1442	0.73	-0.3
1,470,468	-		GFF1442	0.73	+1.2
1,470,484	-		GFF1442	0.75	-1.2
1,470,484	-		GFF1442	0.75	-0.2
1,470,489	-		GFF1442	0.75	+1.3
1,470,489	-		GFF1442	0.75	-1.0
1,470,492	+		GFF1442	0.75	-1.9
1,470,492	+		GFF1442	0.75	-0.5
1,470,494	-		GFF1442	0.76	+1.5
1,470,494	-		GFF1442	0.76	-0.5
1,470,500	-		GFF1442	0.76	+1.0
1,470,500	-		GFF1442	0.76	+0.5
1,470,500	-		GFF1442	0.76	-0.8
1,470,500	-		GFF1442	0.76	+0.1
1,470,500	-		GFF1442	0.76	+0.4
1,470,503	+		GFF1442	0.76	+0.1
1,470,503	+		GFF1442	0.76	+1.4
1,470,511	-		GFF1442	0.77	-2.5
1,470,511	-		GFF1442	0.77	-0.7
1,470,511	-		GFF1442	0.77	-0.9
1,470,511	-		GFF1442	0.77	-0.7
1,470,511	-		GFF1442	0.77	+0.3
1,470,511	-		GFF1442	0.77	+0.0
1,470,521	+		GFF1442	0.78	-0.7
1,470,526	+		GFF1442	0.78	-0.8
1,470,526	+		GFF1442	0.78	-0.9
1,470,534	-		GFF1442	0.79	+1.1
1,470,536	+		GFF1442	0.79	-0.3
1,470,536	+		GFF1442	0.79	-1.2
1,470,544	-		GFF1442	0.80	+0.4
1,470,544	-		GFF1442	0.80	-2.5
1,470,544	-		GFF1442	0.80	-0.1
1,470,556	+		GFF1442	0.81	-0.4
1,470,608	-		GFF1442	0.86	-0.2
1,470,637	-		GFF1442	0.88	+0.1
1,470,637	-		GFF1442	0.88	+0.7
1,470,638	+		GFF1442	0.88	+0.9
1,470,643	+		GFF1442	0.89	-0.6
1,470,659	+				+0.1
1,470,659	+				+0.6
1,470,665	+				-0.5
1,470,667	+				+1.8
1,470,667	-				-0.2
1,470,673	-				-0.0
1,470,686	-				+0.6
1,470,690	+				-0.7
1,470,705	+				-0.4
1,470,713	-				+0.1
1,470,722	-				-0.2
1,470,729	-				+0.1
1,470,750	+				+0.2
1,470,771	-				+0.0
1,470,776	+				-0.6
1,470,824	+				+0.1
1,470,824	+				-1.1
1,470,833	-				-0.9
1,470,854	-		GFF1443	0.10	+1.1
1,470,864	-		GFF1443	0.11	+0.5
1,470,865	+		GFF1443	0.11	+0.8
1,470,865	+		GFF1443	0.11	+0.8
1,470,865	+		GFF1443	0.11	-0.3
1,470,865	+		GFF1443	0.11	+0.9
1,470,866	-		GFF1443	0.11	-0.0
1,470,885	-		GFF1443	0.14	-0.7
1,470,912	+		GFF1443	0.17	+0.8
1,470,917	+		GFF1443	0.17	+0.3
1,470,917	+		GFF1443	0.17	-0.3
1,470,917	+		GFF1443	0.17	-1.4
1,470,917	+		GFF1443	0.17	-0.4
1,470,917	+		GFF1443	0.17	+0.1
1,470,917	+		GFF1443	0.17	-0.4
1,470,922	-		GFF1443	0.18	-0.6
1,470,923	-		GFF1443	0.18	-0.1
1,470,925	-		GFF1443	0.18	+0.1
1,470,925	-		GFF1443	0.18	+0.1
1,470,925	-		GFF1443	0.18	-0.7
1,470,930	-		GFF1443	0.19	-0.4
1,470,930	-		GFF1443	0.19	-1.2
1,470,949	-		GFF1443	0.21	-1.5
1,470,950	+		GFF1443	0.21	-0.2
1,470,950	+		GFF1443	0.21	-1.1
1,470,950	+		GFF1443	0.21	+0.1
1,470,957	-		GFF1443	0.22	-0.7
1,470,958	-		GFF1443	0.22	+0.5
1,470,958	-		GFF1443	0.22	+1.0
1,470,958	-		GFF1443	0.22	-0.3
1,470,968	-		GFF1443	0.23	+0.9
1,470,970	-		GFF1443	0.23	+0.8
1,470,986	+		GFF1443	0.25	+0.8
1,470,986	+		GFF1443	0.25	-0.4
1,470,986	+		GFF1443	0.25	+1.0
1,470,986	+		GFF1443	0.25	-0.9
1,470,986	+		GFF1443	0.25	-1.3
1,470,989	-		GFF1443	0.26	-0.1
1,470,994	-		GFF1443	0.26	-1.5
1,470,994	-		GFF1443	0.26	+0.6
1,471,024	+		GFF1443	0.30	+1.8
1,471,024	-		GFF1443	0.30	-1.9
1,471,039	+		GFF1443	0.31	-1.0
1,471,049	-		GFF1443	0.32	+0.1
1,471,065	+		GFF1443	0.34	-1.2
1,471,068	+		GFF1443	0.35	-0.5
1,471,078	-		GFF1443	0.36	-0.8
1,471,078	-		GFF1443	0.36	-0.9
1,471,092	+		GFF1443	0.37	-0.7
1,471,108	+		GFF1443	0.39	-0.9
1,471,108	+		GFF1443	0.39	-2.6
1,471,108	+		GFF1443	0.39	-0.4
1,471,111	-		GFF1443	0.40	+0.6
1,471,116	-		GFF1443	0.40	-2.3
1,471,117	-		GFF1443	0.40	-0.1
1,471,121	-		GFF1443	0.41	-0.5
1,471,143	+		GFF1443	0.43	+0.2
1,471,155	-		GFF1443	0.45	+0.2
1,471,160	+		GFF1443	0.45	-0.8
1,471,165	+		GFF1443	0.46	-0.7
1,471,173	+		GFF1443	0.47	+0.8
1,471,177	-		GFF1443	0.47	+0.2
1,471,178	-		GFF1443	0.47	-0.7
1,471,179	+		GFF1443	0.47	-0.8
1,471,184	+		GFF1443	0.48	-0.8
1,471,192	-		GFF1443	0.49	+1.1
1,471,230	-		GFF1443	0.53	-1.9
1,471,240	-		GFF1443	0.54	+0.6
1,471,248	+		GFF1443	0.55	-0.8
1,471,251	-		GFF1443	0.56	-0.2
1,471,253	+		GFF1443	0.56	-1.0
1,471,253	+		GFF1443	0.56	-1.7
1,471,253	+		GFF1443	0.56	-1.2
1,471,253	+		GFF1443	0.56	-1.8
1,471,253	+		GFF1443	0.56	-1.6
1,471,253	+		GFF1443	0.56	-1.4
1,471,253	+		GFF1443	0.56	-0.8
1,471,253	+		GFF1443	0.56	-0.6
1,471,253	+		GFF1443	0.56	+0.6
1,471,253	+		GFF1443	0.56	-0.9
1,471,261	-		GFF1443	0.57	+0.6
1,471,261	-		GFF1443	0.57	+0.3
1,471,261	-		GFF1443	0.57	-1.4
1,471,261	-		GFF1443	0.57	+1.1
1,471,261	-		GFF1443	0.57	-0.6
1,471,261	-		GFF1443	0.57	-0.3
1,471,261	-		GFF1443	0.57	+0.5
1,471,261	-		GFF1443	0.57	-0.4
1,471,261	-		GFF1443	0.57	-1.4
1,471,261	-		GFF1443	0.57	-0.8
1,471,261	-		GFF1443	0.57	+0.2
1,471,261	-		GFF1443	0.57	-1.1
1,471,268	+		GFF1443	0.58	+0.5
1,471,276	-		GFF1443	0.59	-0.6
1,471,318	+		GFF1443	0.63	+0.2
1,471,319	-		GFF1443	0.63	+0.3
1,471,329	-		GFF1443	0.65	+0.1
1,471,334	-		GFF1443	0.65	-1.4
1,471,354	-		GFF1443	0.67	+0.2
1,471,399	+		GFF1443	0.73	+0.2
1,471,399	+		GFF1443	0.73	-1.1
1,471,399	+		GFF1443	0.73	+0.2
1,471,399	-		GFF1443	0.73	+1.0
1,471,407	-		GFF1443	0.74	-0.6
1,471,407	-		GFF1443	0.74	+0.3
1,471,409	+		GFF1443	0.74	-1.4
1,471,417	-		GFF1443	0.75	-1.0
1,471,435	-		GFF1443	0.77	+1.3
1,471,445	+		GFF1443	0.78	-1.5
1,471,450	-		GFF1443	0.79	+0.2
1,471,465	+		GFF1443	0.80	+0.2
1,471,520	+		GFF1443	0.87	-0.6
1,471,534	+		GFF1443	0.88	-0.4
1,471,535	+		GFF1443	0.88	-0.3
1,471,535	+		GFF1443	0.88	-1.5
1,471,538	+		GFF1443	0.89	+0.5
1,471,538	+		GFF1443	0.89	-0.2
1,471,543	-		GFF1443	0.89	-0.5
1,471,543	-		GFF1443	0.89	+0.2
1,471,546	-		GFF1443	0.90	-1.4
1,471,588	+				-0.0
1,471,597	+				+0.1
1,471,632	+				+0.9
1,471,636	+				-1.4
1,471,636	+				+0.3
1,471,636	+				-0.8
1,471,636	+				+1.1
1,471,636	+				-1.0
1,471,639	-				-1.5
1,471,644	-				+1.2
1,471,644	-				-0.3
1,471,644	-				+0.1
1,471,644	-				-1.7
1,471,644	-				+1.6
1,471,644	-				-0.4
1,471,644	-				-0.4
1,471,644	-				-2.2
1,471,644	-				-0.9
1,471,644	-				-0.8
1,471,644	-				-0.6
1,471,644	-				+0.1
1,471,648	+				-0.5
1,471,721	-				-1.6
1,471,821	-		GFF1444	0.11	-2.4
1,471,827	+		GFF1444	0.11	-0.6
1,471,837	+		GFF1444	0.12	+1.0
1,471,840	-		GFF1444	0.12	-1.7
1,471,840	-		GFF1444	0.12	-1.7
1,471,854	+		GFF1444	0.13	-1.7
1,471,854	-		GFF1444	0.13	+0.3
1,471,865	+		GFF1444	0.14	+1.5
1,471,872	+		GFF1444	0.14	-0.4
1,471,873	-		GFF1444	0.14	-0.7
1,471,878	+		GFF1444	0.15	-1.5
1,471,880	-		GFF1444	0.15	+0.2
1,471,885	+		GFF1444	0.15	+0.6
1,471,903	+		GFF1444	0.16	+0.1
1,471,905	-		GFF1444	0.17	-2.9
1,471,907	+		GFF1444	0.17	-0.4
1,471,907	+		GFF1444	0.17	-0.5
1,471,907	+		GFF1444	0.17	-0.5
1,471,907	+		GFF1444	0.17	+1.6
1,471,915	-		GFF1444	0.17	-1.4
1,471,915	-		GFF1444	0.17	-0.8
1,471,920	-		GFF1444	0.18	-0.5
1,471,979	+		GFF1444	0.22	+0.4
1,471,979	+		GFF1444	0.22	-0.2
1,471,979	+		GFF1444	0.22	-0.1
1,471,979	+		GFF1444	0.22	-0.5
1,471,979	+		GFF1444	0.22	-0.9
1,471,979	+		GFF1444	0.22	-1.2
1,471,979	+		GFF1444	0.22	-0.7
1,471,979	+		GFF1444	0.22	+1.1
1,471,979	+		GFF1444	0.22	+1.7
1,471,979	+		GFF1444	0.22	-0.8
1,471,979	+		GFF1444	0.22	+0.1
1,471,979	+		GFF1444	0.22	-0.6
1,471,979	+		GFF1444	0.22	+0.7
1,471,979	+		GFF1444	0.22	-0.5
1,471,987	-		GFF1444	0.22	-2.4
1,471,987	-		GFF1444	0.22	+0.3
1,471,987	-		GFF1444	0.22	+0.1
1,471,987	-		GFF1444	0.22	-0.3
1,472,009	-		GFF1444	0.24	-0.1
1,472,010	-		GFF1444	0.24	+0.2
1,472,017	-		GFF1444	0.25	-1.0
1,472,023	+		GFF1444	0.25	-0.5
1,472,028	+		GFF1444	0.25	+1.0
1,472,036	-		GFF1444	0.26	-1.2
1,472,036	-		GFF1444	0.26	-1.8
1,472,036	-		GFF1444	0.26	-1.4
1,472,037	+		GFF1444	0.26	-0.2
1,472,037	+		GFF1444	0.26	-0.1
1,472,039	+		GFF1444	0.26	-0.8
1,472,045	-		GFF1444	0.27	-2.2
1,472,045	-		GFF1444	0.27	-0.4
1,472,045	-		GFF1444	0.27	+0.5
1,472,072	+		GFF1444	0.28	-1.4
1,472,077	-		GFF1444	0.29	+0.1
1,472,080	-		GFF1444	0.29	+0.5
1,472,080	-		GFF1444	0.29	+0.5
1,472,089	+		GFF1444	0.30	-1.2
1,472,174	-		GFF1444	0.36	-0.7
1,472,174	-		GFF1444	0.36	+0.5
1,472,190	+		GFF1444	0.37	-1.9
1,472,203	+		GFF1444	0.38	+1.2
1,472,203	+		GFF1444	0.38	-0.3
1,472,203	+		GFF1444	0.38	-2.0
1,472,203	+		GFF1444	0.38	-1.2
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