Strain Fitness in Sphingobium sp. HT1-2 around GFF1421

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,449,534	-		GFF1419	0.57	-0.8
1,449,534	-		GFF1419	0.57	-1.5
1,449,555	-		GFF1419	0.59	+0.3
1,449,557	+		GFF1419	0.60	-0.8
1,449,557	+		GFF1419	0.60	-0.3
1,449,565	-		GFF1419	0.61	-2.3
1,449,580	+		GFF1419	0.62	-0.9
1,449,597	+		GFF1419	0.64	+1.6
1,449,603	-		GFF1419	0.65	-0.8
1,449,603	-		GFF1419	0.65	-1.0
1,449,626	-		GFF1419	0.68	-0.9
1,449,648	-		GFF1419	0.70	-0.3
1,449,648	-		GFF1419	0.70	-0.9
1,449,659	+		GFF1419	0.71	+0.2
1,449,664	+		GFF1419	0.72	-0.2
1,449,717	-		GFF1419	0.78	-0.2
1,449,717	-		GFF1419	0.78	-1.6
1,449,739	-		GFF1419	0.81	+0.0
1,449,760	+		GFF1419	0.83	-2.2
1,449,790	+		GFF1419	0.87	-0.0
1,449,798	-		GFF1419	0.88	-0.9
1,449,807	+		GFF1419	0.89	+0.5
1,449,807	+		GFF1419	0.89	-1.6
1,449,808	+		GFF1419	0.89	-0.5
1,449,816	-		GFF1419	0.90	+0.1
1,449,816	-		GFF1419	0.90	-0.4
1,449,816	-		GFF1419	0.90	-1.1
1,449,816	-		GFF1419	0.90	-0.7
1,449,823	+				+1.4
1,449,823	-				-1.4
1,449,826	-				-0.6
1,449,828	+				+0.3
1,449,859	+				+0.4
1,449,859	+				+0.3
1,449,860	+				-0.0
1,449,861	-				-0.6
1,449,867	-				-1.5
1,449,868	-				+0.6
1,449,878	+				-1.1
1,449,918	+				-0.9
1,449,938	+				-0.2
1,449,938	+				+0.8
1,449,938	+				-0.1
1,449,946	-				-0.5
1,449,960	+				-1.7
1,449,964	-				-0.5
1,449,965	+				-1.3
1,449,973	-				-0.2
1,449,973	-				+0.0
1,449,973	-				-0.0
1,449,973	-				-0.3
1,449,982	+				+0.5
1,449,983	+				+1.3
1,449,987	+				+0.4
1,450,001	-				-0.1
1,450,035	+				-1.6
1,450,041	+				+0.0
1,450,045	+				-1.1
1,450,091	+		GFF1420	0.18	-0.2
1,450,094	-		GFF1420	0.18	-0.7
1,450,094	-		GFF1420	0.18	+0.6
1,450,094	-		GFF1420	0.18	+1.9
1,450,094	-		GFF1420	0.18	+1.4
1,450,099	-		GFF1420	0.19	+0.1
1,450,099	-		GFF1420	0.19	+0.1
1,450,108	+		GFF1420	0.21	+0.7
1,450,111	-		GFF1420	0.22	-1.9
1,450,131	-		GFF1420	0.26	-2.5
1,450,151	+		GFF1420	0.29	-0.8
1,450,152	-		GFF1420	0.30	-2.6
1,450,173	+		GFF1420	0.34	-0.9
1,450,179	+		GFF1420	0.35	-1.1
1,450,187	-		GFF1420	0.36	-2.0
1,450,196	+		GFF1420	0.38	-2.4
1,450,196	+		GFF1420	0.38	-0.2
1,450,196	+		GFF1420	0.38	+1.2
1,450,196	+		GFF1420	0.38	+0.5
1,450,196	+		GFF1420	0.38	+1.1
1,450,196	+		GFF1420	0.38	-0.3
1,450,204	-		GFF1420	0.40	-2.4
1,450,204	-		GFF1420	0.40	+1.4
1,450,204	-		GFF1420	0.40	-1.8
1,450,221	+		GFF1420	0.43	-2.6
1,450,221	+		GFF1420	0.43	-0.6
1,450,229	-		GFF1420	0.45	+0.3
1,450,249	-		GFF1420	0.48	-1.1
1,450,308	-		GFF1420	0.60	+0.9
1,450,314	+		GFF1420	0.61	+0.4
1,450,322	-		GFF1420	0.63	+0.3
1,450,322	-		GFF1420	0.63	-0.8
1,450,367	+		GFF1420	0.71	-0.7
1,450,367	+		GFF1420	0.71	+0.0
1,450,375	-		GFF1420	0.73	-2.3
1,450,375	-		GFF1420	0.73	-0.5
1,450,375	-		GFF1420	0.73	+0.8
1,450,375	-		GFF1420	0.73	-0.1
1,450,375	-		GFF1420	0.73	-1.9
1,450,382	-		GFF1420	0.74	-0.2
1,450,423	-		GFF1420	0.82	+0.0
1,450,450	-		GFF1420	0.87	-0.3
1,450,482	-				-1.6
1,450,482	-				-1.3
1,450,505	+				-0.4
1,450,528	-				-0.1
1,450,574	+		GFF1421	0.10	+0.0
1,450,574	+		GFF1421	0.10	+0.2
1,450,579	+		GFF1421	0.12	+0.5
1,450,582	-		GFF1421	0.12	+0.1
1,450,586	-		GFF1421	0.13	-0.2
1,450,587	-		GFF1421	0.14	-0.5
1,450,593	+		GFF1421	0.15	+0.7
1,450,640	+		GFF1421	0.26	-0.5
1,450,645	+		GFF1421	0.28	-0.2
1,450,650	+		GFF1421	0.29	+0.4
1,450,650	+		GFF1421	0.29	+1.8
1,450,653	-		GFF1421	0.29	+0.2
1,450,653	-		GFF1421	0.29	-0.3
1,450,653	-		GFF1421	0.29	-1.8
1,450,658	-		GFF1421	0.31	-0.8
1,450,658	-		GFF1421	0.31	+0.0
1,450,665	-		GFF1421	0.32	+0.0
1,450,675	-		GFF1421	0.35	+0.2
1,450,679	+		GFF1421	0.36	-0.4
1,450,687	+		GFF1421	0.38	+0.2
1,450,687	+		GFF1421	0.38	+0.6
1,450,692	+		GFF1421	0.39	+0.4
1,450,695	-		GFF1421	0.40	-1.2
1,450,695	-		GFF1421	0.40	-0.7
1,450,695	-		GFF1421	0.40	+2.1
1,450,700	-		GFF1421	0.41	-1.0
1,450,770	+		GFF1421	0.58	+0.7
1,450,792	+		GFF1421	0.63	-0.4
1,450,818	+		GFF1421	0.69	-0.2
1,450,826	-		GFF1421	0.71	-1.2
1,450,826	-		GFF1421	0.71	+0.1
1,450,834	+		GFF1421	0.73	+0.6
1,450,834	+		GFF1421	0.73	+0.1
1,450,834	+		GFF1421	0.73	-0.6
1,450,842	-		GFF1421	0.75	-0.9
1,450,842	-		GFF1421	0.75	-0.3
1,450,862	-		GFF1421	0.80	+0.9
1,450,879	+		GFF1421	0.84	+0.2
1,450,879	+		GFF1421	0.84	-0.2
1,450,887	-		GFF1421	0.86	-0.5
1,450,927	-				+1.0
1,450,941	-				-1.8
1,450,953	+				-0.2
1,450,989	+				-0.1
1,450,989	+				+1.1
1,450,997	-				+0.9
1,450,999	-				+1.0
1,451,008	+				-0.7
1,451,116	-		GFF1422	0.28	+0.7
1,451,131	-		GFF1422	0.31	-0.3
1,451,136	-		GFF1422	0.32	-0.0
1,451,136	-		GFF1422	0.32	+0.8
1,451,153	-		GFF1422	0.35	-1.6
1,451,153	-		GFF1422	0.35	-0.4
1,451,155	+		GFF1422	0.35	+1.4
1,451,155	-		GFF1422	0.35	+0.0
1,451,160	+		GFF1422	0.36	+1.7
1,451,205	-		GFF1422	0.44	+1.3
1,451,208	+		GFF1422	0.45	-0.5
1,451,214	-		GFF1422	0.46	-0.8
1,451,254	+		GFF1422	0.53	-0.1
1,451,254	+		GFF1422	0.53	+1.1
1,451,274	+		GFF1422	0.57	+0.1
1,451,282	-		GFF1422	0.58	-1.1
1,451,282	-		GFF1422	0.58	-0.2
1,451,292	-		GFF1422	0.60	-0.5
1,451,300	-		GFF1422	0.61	+0.0
1,451,318	+		GFF1422	0.65	-0.8
1,451,318	+		GFF1422	0.65	-0.2
1,451,326	-		GFF1422	0.66	-0.6
1,451,326	-		GFF1422	0.66	+1.0
1,451,327	+		GFF1422	0.66	-1.5
1,451,358	+		GFF1422	0.72	-1.3
1,451,375	+		GFF1422	0.75	-0.3
1,451,377	+		GFF1422	0.75	-1.5
1,451,377	+		GFF1422	0.75	-1.8
1,451,385	-		GFF1422	0.77	-0.3
1,451,385	-		GFF1422	0.77	-1.1
1,451,422	+		GFF1422	0.83	-0.8
1,451,424	+		GFF1422	0.84	-2.7
1,451,432	-		GFF1422	0.85	+0.9
1,451,432	-		GFF1422	0.85	-0.2
1,451,433	-		GFF1422	0.85	+0.6
1,451,436	+		GFF1422	0.86	-0.4
1,451,454	-		GFF1422	0.89	+0.6
1,451,461	-				-2.3
1,451,465	+				+0.6
1,451,465	+				-0.1
1,451,497	-				+0.3
1,451,497	-				-0.5
1,451,534	+				+0.1
1,451,542	-				+0.6
1,451,579	+				-0.3
1,451,610	+				+0.1
1,451,615	+				+0.2
1,451,635	-				+0.4
1,451,687	+				-2.5
1,451,687	+				+0.9
1,451,695	-				+0.5
1,451,719	-				+0.4
1,451,738	+				-2.8
1,451,763	-				-0.1
1,451,773	-				-0.8
1,451,790	+		GFF1423	0.12	-2.0
1,451,790	+		GFF1423	0.12	+0.3
1,451,798	-		GFF1423	0.12	-1.0
1,451,800	+		GFF1423	0.13	+0.2
1,451,803	-		GFF1423	0.13	-2.6
1,451,813	-		GFF1423	0.14	-0.8
1,451,819	+		GFF1423	0.15	-2.0
1,451,819	+		GFF1423	0.15	+0.9
1,451,827	-		GFF1423	0.16	-0.1
1,451,827	-		GFF1423	0.16	+0.7
1,451,827	-		GFF1423	0.16	+0.5
1,451,827	-		GFF1423	0.16	+0.6
1,451,827	-		GFF1423	0.16	-0.5
1,451,851	+		GFF1423	0.18	+0.3
1,451,851	+		GFF1423	0.18	+0.4
1,451,854	-		GFF1423	0.19	+1.3
1,451,859	-		GFF1423	0.19	+0.2
1,451,878	-		GFF1423	0.22	+1.2
1,451,916	-		GFF1423	0.26	+0.3
1,451,925	-		GFF1423	0.27	+0.8
1,451,930	-		GFF1423	0.28	-0.9