Strain Fitness in Sphingobium sp. HT1-2 around GFF1404

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,430,344	+				-1.7
1,430,344	+				-1.1
1,430,352	-				-1.3
1,430,352	-				+0.3
1,430,370	+				-1.4
1,430,391	+				+1.6
1,430,399	-				-0.7
1,430,434	-				+0.4
1,430,505	+				-0.9
1,430,515	+				-1.6
1,430,522	+				-1.4
1,430,530	-				-0.9
1,430,530	-				-1.2
1,430,534	+				-2.0
1,430,547	-				-1.4
1,430,549	-				-2.4
1,430,568	+				+0.2
1,430,568	+				+0.1
1,430,576	-				+1.1
1,430,578	+				+0.6
1,430,586	-				-0.7
1,430,586	-				+1.2
1,430,586	-				-0.2
1,430,609	-				+0.8
1,430,609	-				-2.1
1,430,609	-				-0.5
1,430,714	-				-0.4
1,430,721	+				-2.5
1,430,729	-				+1.4
1,430,745	+		GFF1403	0.11	-0.5
1,430,750	-		GFF1403	0.12	-0.0
1,430,753	-		GFF1403	0.12	+0.2
1,430,753	-		GFF1403	0.12	-0.1
1,430,763	+		GFF1403	0.14	+0.6
1,430,771	-		GFF1403	0.15	-0.3
1,430,798	+		GFF1403	0.19	-0.3
1,430,798	+		GFF1403	0.19	-0.0
1,430,798	+		GFF1403	0.19	-0.6
1,430,806	-		GFF1403	0.21	+0.4
1,430,806	-		GFF1403	0.21	-0.8
1,430,806	-		GFF1403	0.21	+0.0
1,430,806	-		GFF1403	0.21	-0.4
1,430,806	-		GFF1403	0.21	-0.3
1,430,819	+		GFF1403	0.23	+0.0
1,430,827	-		GFF1403	0.24	-0.2
1,430,836	+		GFF1403	0.25	-0.3
1,430,882	-		GFF1403	0.32	+0.1
1,430,882	-		GFF1403	0.32	-1.2
1,430,910	+		GFF1403	0.37	-0.0
1,430,910	+		GFF1403	0.37	+0.6
1,430,918	-		GFF1403	0.38	-0.2
1,430,918	-		GFF1403	0.38	-0.8
1,430,918	-		GFF1403	0.38	-1.6
1,430,918	-		GFF1403	0.38	+0.3
1,430,918	-		GFF1403	0.38	-0.7
1,430,918	-		GFF1403	0.38	-1.3
1,430,925	+		GFF1403	0.39	+0.4
1,430,937	-		GFF1403	0.41	-0.6
1,430,956	-		GFF1403	0.44	+0.1
1,430,977	-		GFF1403	0.47	-0.9
1,431,000	-		GFF1403	0.51	-0.1
1,431,019	-		GFF1403	0.54	-1.2
1,431,020	+		GFF1403	0.54	+0.1
1,431,028	-		GFF1403	0.55	+0.0
1,431,031	-		GFF1403	0.56	-1.2
1,431,041	+		GFF1403	0.57	-1.6
1,431,050	+		GFF1403	0.59	+0.0
1,431,055	+		GFF1403	0.59	-1.5
1,431,063	-		GFF1403	0.61	+0.4
1,431,105	+		GFF1403	0.67	+0.1
1,431,105	+		GFF1403	0.67	-1.5
1,431,109	-		GFF1403	0.68	-1.9
1,431,164	+		GFF1403	0.76	+0.1
1,431,173	-		GFF1403	0.78	-0.9
1,431,173	-		GFF1403	0.78	-0.9
1,431,184	+		GFF1403	0.79	+0.4
1,431,184	+		GFF1403	0.79	+0.9
1,431,192	-		GFF1403	0.81	-0.9
1,431,192	-		GFF1403	0.81	-0.6
1,431,192	-		GFF1403	0.81	-1.8
1,431,197	+		GFF1403	0.81	-0.2
1,431,197	+		GFF1403	0.81	-2.2
1,431,197	+		GFF1403	0.81	+0.2
1,431,197	+		GFF1403	0.81	-2.0
1,431,197	+		GFF1403	0.81	+1.2
1,431,197	+		GFF1403	0.81	+1.1
1,431,205	-		GFF1403	0.83	-0.3
1,431,205	-		GFF1403	0.83	+0.3
1,431,205	-		GFF1403	0.83	+0.9
1,431,205	-		GFF1403	0.83	+0.6
1,431,210	-		GFF1403	0.83	-0.2
1,431,232	-		GFF1403	0.87	+0.2
1,431,237	-		GFF1403	0.88	+1.4
1,431,243	+		GFF1403	0.89	-0.4
1,431,310	+				+0.6
1,431,310	+				-0.0
1,431,317	+				-1.1
1,431,317	+				-0.3
1,431,318	-				+0.5
1,431,325	-				-1.2
1,431,325	-				+1.3
1,431,325	-				-2.0
1,431,335	+				-1.6
1,431,347	+				-0.4
1,431,373	-				+0.2
1,431,399	+				-0.4
1,431,402	-		GFF1404	0.10	-0.7
1,431,407	-		GFF1404	0.11	-0.3
1,431,425	+		GFF1404	0.13	+0.7
1,431,425	+		GFF1404	0.13	+1.1
1,431,425	-		GFF1404	0.13	+0.0
1,431,433	-		GFF1404	0.14	-0.1
1,431,441	+		GFF1404	0.15	+0.2
1,431,443	-		GFF1404	0.15	+0.2
1,431,449	-		GFF1404	0.16	+0.0
1,431,488	+		GFF1404	0.21	-0.5
1,431,496	-		GFF1404	0.22	-0.2
1,431,548	-		GFF1404	0.28	-1.3
1,431,550	-		GFF1404	0.28	+0.5
1,431,550	-		GFF1404	0.28	-0.2
1,431,560	+		GFF1404	0.29	+1.0
1,431,567	-		GFF1404	0.30	-0.4
1,431,576	+		GFF1404	0.31	-0.3
1,431,586	+		GFF1404	0.32	+0.7
1,431,587	+		GFF1404	0.33	+0.6
1,431,591	+		GFF1404	0.33	-0.1
1,431,591	+		GFF1404	0.33	+0.3
1,431,591	+		GFF1404	0.33	-0.7
1,431,591	+		GFF1404	0.33	-1.5
1,431,591	+		GFF1404	0.33	-0.0
1,431,592	+		GFF1404	0.33	-0.0
1,431,592	+		GFF1404	0.33	-0.1
1,431,594	-		GFF1404	0.33	-2.2
1,431,599	-		GFF1404	0.34	-0.3
1,431,619	-		GFF1404	0.36	-0.7
1,431,640	+		GFF1404	0.39	-0.7
1,431,640	+		GFF1404	0.39	-0.4
1,431,648	-		GFF1404	0.40	+0.4
1,431,687	-		GFF1404	0.45	+0.1
1,431,728	+		GFF1404	0.50	-2.4
1,431,728	+		GFF1404	0.50	-1.7
1,431,742	+		GFF1404	0.51	+1.4
1,431,780	+		GFF1404	0.56	-1.2
1,431,790	-		GFF1404	0.57	-2.1
1,431,800	-		GFF1404	0.59	-0.1
1,431,808	-		GFF1404	0.59	-1.6
1,431,813	-		GFF1404	0.60	-0.2
1,431,899	+		GFF1404	0.71	+1.1
1,431,899	+		GFF1404	0.71	-2.3
1,431,921	+		GFF1404	0.73	-0.2
1,431,921	+		GFF1404	0.73	-0.0
1,431,943	+		GFF1404	0.76	+0.4
1,431,943	-		GFF1404	0.76	-1.5
1,431,956	+		GFF1404	0.77	-1.7
1,431,956	+		GFF1404	0.77	-0.2
1,431,957	-		GFF1404	0.78	-1.9
1,431,959	+		GFF1404	0.78	+1.5
1,431,964	+		GFF1404	0.78	+1.3
1,431,964	+		GFF1404	0.78	-1.4
1,431,964	-		GFF1404	0.78	-0.1
1,432,003	+		GFF1404	0.83	+0.5
1,432,013	+		GFF1404	0.84	+0.2
1,432,013	+		GFF1404	0.84	-1.0
1,432,013	+		GFF1404	0.84	+0.4
1,432,013	+		GFF1404	0.84	-0.9
1,432,021	-		GFF1404	0.85	-0.7
1,432,031	-		GFF1404	0.87	+0.5
1,432,031	-		GFF1404	0.87	-0.2
1,432,032	+		GFF1404	0.87	+0.9
1,432,032	+		GFF1404	0.87	-0.9
1,432,039	+		GFF1404	0.88	-1.2
1,432,074	-				-0.4
1,432,088	-				+0.8
1,432,091	+				+1.0
1,432,092	-				-1.6
1,432,101	+				-0.7
1,432,103	+				-0.9
1,432,109	-				+0.3
1,432,113	+				-2.5
1,432,113	+				-1.8
1,432,134	+				-0.4
1,432,138	+				-0.2
1,432,138	+				-1.9
1,432,146	-				-0.9
1,432,147	+				-0.2
1,432,147	+				+0.6
1,432,147	+				+0.1
1,432,147	-				-1.7
1,432,151	-				+0.2
1,432,157	-				+0.1
1,432,162	-				-1.4
1,432,165	+				+0.2
1,432,173	-				-1.9
1,432,176	+				-0.9
1,432,183	+				-1.2
1,432,183	-				+0.3
1,432,201	-				-0.6
1,432,254	+				+1.2
1,432,254	+				-1.6
1,432,257	-				+0.1
1,432,262	-				-0.5
1,432,265	+				-1.5
1,432,276	+				-1.6
1,432,278	+				-1.2
1,432,301	-				+0.8
1,432,307	-				-0.8
1,432,353	+		GFF1405	0.16	-0.7
1,432,354	+		GFF1405	0.16	+1.1
1,432,366	-		GFF1405	0.18	+0.3
1,432,366	-		GFF1405	0.18	-2.5
1,432,376	-		GFF1405	0.19	+0.1
1,432,376	-		GFF1405	0.19	-0.2
1,432,376	-		GFF1405	0.19	+0.9
1,432,401	+		GFF1405	0.22	+1.6
1,432,404	+		GFF1405	0.23	+0.0
1,432,404	+		GFF1405	0.23	+0.8
1,432,412	-		GFF1405	0.24	-0.2
1,432,412	-		GFF1405	0.24	-0.2
1,432,422	+		GFF1405	0.25	-0.2
1,432,448	+		GFF1405	0.29	-0.4
1,432,448	+		GFF1405	0.29	-0.8
1,432,455	+		GFF1405	0.30	-0.2
1,432,477	+		GFF1405	0.33	-0.3
1,432,477	+		GFF1405	0.33	-0.1
1,432,479	+		GFF1405	0.33	-1.4
1,432,482	-		GFF1405	0.33	-0.3
1,432,484	+		GFF1405	0.34	-0.0
1,432,484	+		GFF1405	0.34	-1.4
1,432,484	+		GFF1405	0.34	+0.0
1,432,485	-		GFF1405	0.34	-1.2
1,432,485	-		GFF1405	0.34	-1.4
1,432,487	-		GFF1405	0.34	-0.4
1,432,492	-		GFF1405	0.35	-2.0
1,432,492	-		GFF1405	0.35	-1.6
1,432,492	-		GFF1405	0.35	+1.3
1,432,518	+		GFF1405	0.38	-1.9
1,432,521	-		GFF1405	0.39	+0.6
1,432,521	-		GFF1405	0.39	-1.7
1,432,560	+		GFF1405	0.44	+0.2
1,432,568	-		GFF1405	0.45	-0.1
1,432,595	-		GFF1405	0.49	-0.2
1,432,647	+		GFF1405	0.56	-0.3
1,432,655	-		GFF1405	0.57	+0.2
1,432,670	+		GFF1405	0.59	+0.0
1,432,670	+		GFF1405	0.59	+0.3
1,432,675	+		GFF1405	0.60	-0.2
1,432,678	-		GFF1405	0.60	-1.8
1,432,678	-		GFF1405	0.60	+0.8
1,432,690	+		GFF1405	0.62	-1.9
1,432,698	-		GFF1405	0.63	-1.4
1,432,720	+		GFF1405	0.66	-0.5
1,432,763	+		GFF1405	0.72	-2.4
1,432,771	-		GFF1405	0.73	-1.8
1,432,772	-		GFF1405	0.73	-1.8
1,432,773	+		GFF1405	0.73	-0.5
1,432,773	+		GFF1405	0.73	-1.3
1,432,773	+		GFF1405	0.73	-1.7
1,432,773	+		GFF1405	0.73	-1.2
1,432,775	+		GFF1405	0.73	+1.1
1,432,781	-		GFF1405	0.74	-0.3
1,432,781	-		GFF1405	0.74	+0.5
1,432,781	-		GFF1405	0.74	-1.1
1,432,781	-		GFF1405	0.74	+0.4
1,432,781	-		GFF1405	0.74	-1.0
1,432,790	-		GFF1405	0.75	-0.0
1,432,818	-		GFF1405	0.79	-1.5
1,432,819	+		GFF1405	0.79	-0.1
1,432,834	-		GFF1405	0.81	+0.6
1,432,839	-		GFF1405	0.82	+0.9
1,432,844	-		GFF1405	0.83	-0.2
1,432,849	-		GFF1405	0.83	-1.2
1,432,854	-		GFF1405	0.84	+0.4
1,432,858	+		GFF1405	0.84	-2.9
1,432,906	+				+0.2
1,432,911	+				-0.9
1,432,911	+				-0.6
1,432,917	+				+1.1
1,432,918	-				-0.2
1,432,919	-				-0.2
1,432,919	-				-0.4
1,432,919	-				-1.1
1,432,919	-				-0.8
1,432,919	-				+0.6
1,432,950	+				-0.2
1,432,950	+				-1.5
1,432,950	+				-0.0
1,432,950	+				+0.8
1,432,950	+				-0.9
1,432,950	+				-2.5
1,432,953	-				+0.5
1,432,953	-				-0.0
1,432,955	+				-0.6
1,432,955	+				+0.6
1,432,956	+				-0.8
1,432,958	-				+0.4
1,432,958	-				-0.2
1,432,958	-				-0.1
1,432,963	-				+1.2
1,433,063	+				+1.1
1,433,063	+				-0.5
1,433,063	+				-0.5
1,433,063	+				-2.1
1,433,073	-				+1.1
1,433,082	+				+0.3
1,433,090	-				-2.4
1,433,090	-				-2.4
1,433,092	+				+0.4
1,433,092	+				+1.6
1,433,092	+				+0.3
1,433,092	+				-0.7
1,433,092	+				-0.3
1,433,100	-				-0.1
1,433,100	-				-1.0
1,433,100	-				-0.8
1,433,100	-				-0.9
1,433,100	-				-0.8
1,433,100	-				-3.0
1,433,131	+				-2.2