Strain Fitness in Sphingobium sp. HT1-2 around GFF1400

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,425,445	-				-1.2
1,425,448	-				-1.1
1,425,448	-				-2.3
1,425,450	-				+0.6
1,425,450	-				-1.5
1,425,450	-				-1.6
1,425,452	+				+0.1
1,425,460	-				-1.4
1,425,460	-				-0.9
1,425,460	-				-2.8
1,425,462	+				-1.9
1,425,470	-				-1.2
1,425,483	+				+0.5
1,425,483	+				-0.6
1,425,483	+				+0.9
1,425,483	+				+0.1
1,425,483	+				-0.3
1,425,485	+				+0.3
1,425,488	+				-0.1
1,425,488	+				+0.4
1,425,488	+				-1.9
1,425,488	+				+0.3
1,425,488	+				-0.1
1,425,488	+				+0.0
1,425,489	-				-0.9
1,425,491	-				+1.0
1,425,491	-				-0.1
1,425,491	-				-1.4
1,425,491	-				-1.3
1,425,491	-				+0.2
1,425,491	-				-0.8
1,425,496	-				-0.3
1,425,496	-				+1.5
1,425,513	-				-0.3
1,425,530	+				+0.2
1,425,535	+				+0.5
1,425,535	+				+0.3
1,425,543	-				-0.1
1,425,543	-				+1.2
1,425,543	-				-1.2
1,425,550	-				-1.0
1,425,575	+		GFF1399	0.11	-0.2
1,425,578	-		GFF1399	0.12	+0.1
1,425,579	-		GFF1399	0.12	-1.3
1,425,580	+		GFF1399	0.12	-0.6
1,425,580	+		GFF1399	0.12	+1.1
1,425,580	+		GFF1399	0.12	-1.5
1,425,580	+		GFF1399	0.12	-2.0
1,425,580	+		GFF1399	0.12	-1.2
1,425,580	+		GFF1399	0.12	-0.5
1,425,580	+		GFF1399	0.12	+0.2
1,425,588	-		GFF1399	0.13	+0.3
1,425,588	-		GFF1399	0.13	-0.0
1,425,588	-		GFF1399	0.13	-0.6
1,425,588	-		GFF1399	0.13	+0.6
1,425,588	-		GFF1399	0.13	-0.4
1,425,588	-		GFF1399	0.13	-1.1
1,425,588	-		GFF1399	0.13	+0.1
1,425,588	-		GFF1399	0.13	+0.2
1,425,591	+		GFF1399	0.13	-0.4
1,425,599	-		GFF1399	0.14	-1.3
1,425,599	-		GFF1399	0.14	-1.2
1,425,599	-		GFF1399	0.14	-0.3
1,425,615	+		GFF1399	0.16	-0.4
1,425,623	-		GFF1399	0.16	+0.1
1,425,649	-		GFF1399	0.19	+1.4
1,425,649	-		GFF1399	0.19	-1.6
1,425,649	-		GFF1399	0.19	+0.6
1,425,649	-		GFF1399	0.19	-0.6
1,425,657	-		GFF1399	0.20	-0.1
1,425,675	+		GFF1399	0.22	-1.4
1,425,675	+		GFF1399	0.22	+0.5
1,425,675	+		GFF1399	0.22	-0.9
1,425,675	+		GFF1399	0.22	+0.1
1,425,675	+		GFF1399	0.22	+2.0
1,425,683	-		GFF1399	0.23	+1.0
1,425,683	-		GFF1399	0.23	-1.7
1,425,683	-		GFF1399	0.23	+0.9
1,425,683	-		GFF1399	0.23	-0.8
1,425,683	-		GFF1399	0.23	-2.9
1,425,683	-		GFF1399	0.23	-1.1
1,425,683	-		GFF1399	0.23	-1.1
1,425,689	-		GFF1399	0.23	+1.5
1,425,691	+		GFF1399	0.23	-0.2
1,425,698	-		GFF1399	0.24	-0.3
1,425,733	+		GFF1399	0.28	-0.3
1,425,743	+		GFF1399	0.29	-0.7
1,425,750	+		GFF1399	0.30	+0.3
1,425,750	+		GFF1399	0.30	-1.4
1,425,750	+		GFF1399	0.30	-0.2
1,425,754	+		GFF1399	0.30	-1.2
1,425,757	-		GFF1399	0.30	+0.5
1,425,758	-		GFF1399	0.30	-0.5
1,425,762	-		GFF1399	0.31	+0.3
1,425,779	+		GFF1399	0.33	-0.4
1,425,779	+		GFF1399	0.33	-0.6
1,425,779	+		GFF1399	0.33	-0.4
1,425,782	-		GFF1399	0.33	-1.4
1,425,784	+		GFF1399	0.33	-0.1
1,425,784	+		GFF1399	0.33	-0.9
1,425,787	-		GFF1399	0.33	-0.2
1,425,792	-		GFF1399	0.34	-0.7
1,425,792	-		GFF1399	0.34	+0.6
1,425,819	-		GFF1399	0.37	-0.3
1,425,855	+		GFF1399	0.40	+0.8
1,425,855	+		GFF1399	0.40	+0.2
1,425,863	-		GFF1399	0.41	-0.2
1,425,863	-		GFF1399	0.41	-0.1
1,425,863	-		GFF1399	0.41	-0.5
1,425,867	+		GFF1399	0.42	-1.4
1,425,886	-		GFF1399	0.44	-1.5
1,425,907	+		GFF1399	0.46	-2.5
1,425,915	-		GFF1399	0.47	-2.4
1,425,933	+		GFF1399	0.49	+0.1
1,425,951	+		GFF1399	0.50	+0.8
1,425,951	+		GFF1399	0.50	-0.3
1,425,956	-		GFF1399	0.51	-0.2
1,425,959	-		GFF1399	0.51	-1.4
1,425,959	-		GFF1399	0.51	-0.6
1,425,959	-		GFF1399	0.51	-0.2
1,425,959	-		GFF1399	0.51	+0.8
1,425,959	-		GFF1399	0.51	-1.2
1,425,982	+		GFF1399	0.54	-0.5
1,425,982	+		GFF1399	0.54	-0.9
1,425,982	+		GFF1399	0.54	-1.5
1,425,990	-		GFF1399	0.54	-1.2
1,425,990	-		GFF1399	0.54	-0.5
1,425,990	-		GFF1399	0.54	-1.0
1,425,990	-		GFF1399	0.54	+0.1
1,425,990	-		GFF1399	0.54	+0.5
1,425,990	-		GFF1399	0.54	-0.1
1,425,990	-		GFF1399	0.54	-1.9
1,426,001	+		GFF1399	0.56	+0.3
1,426,001	+		GFF1399	0.56	+1.6
1,426,007	-		GFF1399	0.56	-0.5
1,426,034	-		GFF1399	0.59	-0.0
1,426,041	+		GFF1399	0.60	-0.3
1,426,045	+		GFF1399	0.60	+0.3
1,426,049	-		GFF1399	0.61	+0.3
1,426,055	+		GFF1399	0.61	-1.8
1,426,063	-		GFF1399	0.62	-0.2
1,426,063	-		GFF1399	0.62	+0.3
1,426,068	+		GFF1399	0.63	+1.2
1,426,068	+		GFF1399	0.63	-0.3
1,426,078	+		GFF1399	0.64	+0.6
1,426,086	-		GFF1399	0.64	-1.6
1,426,097	+		GFF1399	0.66	-0.9
1,426,103	+		GFF1399	0.66	+0.4
1,426,104	-		GFF1399	0.66	-0.6
1,426,105	-		GFF1399	0.66	-0.3
1,426,105	-		GFF1399	0.66	-0.9
1,426,109	-		GFF1399	0.67	+0.1
1,426,117	+		GFF1399	0.68	+0.0
1,426,127	+		GFF1399	0.69	-0.3
1,426,161	-		GFF1399	0.72	-1.0
1,426,164	-		GFF1399	0.72	-0.1
1,426,219	-		GFF1399	0.78	+1.4
1,426,235	+		GFF1399	0.80	-0.8
1,426,235	+		GFF1399	0.80	+0.1
1,426,235	+		GFF1399	0.80	-0.0
1,426,235	+		GFF1399	0.80	-1.1
1,426,243	-		GFF1399	0.81	-0.5
1,426,268	+		GFF1399	0.83	+0.4
1,426,268	+		GFF1399	0.83	-1.8
1,426,268	+		GFF1399	0.83	+0.2
1,426,276	-		GFF1399	0.84	-0.7
1,426,276	-		GFF1399	0.84	+0.1
1,426,276	-		GFF1399	0.84	-1.8
1,426,276	-		GFF1399	0.84	-1.4
1,426,276	-		GFF1399	0.84	-0.5
1,426,276	-		GFF1399	0.84	-1.8
1,426,296	-		GFF1399	0.86	-0.2
1,426,324	-		GFF1399	0.89	-0.5
1,426,350	-				-0.7
1,426,350	-				-3.0
1,426,350	-				+0.2
1,426,352	+				+0.4
1,426,352	+				-0.1
1,426,352	+				+0.1
1,426,360	-				-1.9
1,426,360	-				+0.9
1,426,384	+				-0.8
1,426,394	-				-0.2
1,426,420	-				+0.0
1,426,420	-				+0.3
1,426,443	+				-1.4
1,426,505	+				+0.2
1,426,505	+				-1.6
1,426,513	+		GFF1400	0.11	-0.9
1,426,513	-		GFF1400	0.11	+0.1
1,426,513	-		GFF1400	0.11	-1.2
1,426,521	-		GFF1400	0.12	-1.0
1,426,532	-		GFF1400	0.14	-0.2
1,426,553	-		GFF1400	0.17	+1.1
1,426,563	-		GFF1400	0.18	-1.5
1,426,563	-		GFF1400	0.18	+0.1
1,426,563	-		GFF1400	0.18	-0.6
1,426,567	-		GFF1400	0.19	+0.7
1,426,567	-		GFF1400	0.19	+0.8
1,426,567	-		GFF1400	0.19	+0.1
1,426,568	-		GFF1400	0.19	-0.2
1,426,594	+		GFF1400	0.23	+1.2
1,426,602	+		GFF1400	0.24	-0.1
1,426,602	-		GFF1400	0.24	-0.2
1,426,652	-		GFF1400	0.32	+0.3
1,426,654	-		GFF1400	0.33	-0.1
1,426,669	+		GFF1400	0.35	-0.6
1,426,680	+		GFF1400	0.37	-0.7
1,426,695	+		GFF1400	0.39	-2.6
1,426,716	+		GFF1400	0.42	-0.1
1,426,716	+		GFF1400	0.42	+0.3
1,426,724	-		GFF1400	0.43	+0.5
1,426,724	-		GFF1400	0.43	-1.3
1,426,737	+		GFF1400	0.45	-1.0
1,426,745	-		GFF1400	0.47	+1.0
1,426,753	+		GFF1400	0.48	-1.5
1,426,754	+		GFF1400	0.48	+0.4
1,426,787	+		GFF1400	0.53	-1.4
1,426,829	-		GFF1400	0.60	+0.4
1,426,835	+		GFF1400	0.61	-1.1
1,426,854	+		GFF1400	0.64	+0.5
1,426,892	+		GFF1400	0.70	-0.7
1,426,911	+		GFF1400	0.73	-1.5
1,426,911	+		GFF1400	0.73	-2.0
1,426,911	+		GFF1400	0.73	+0.2
1,426,911	+		GFF1400	0.73	+0.4
1,426,911	+		GFF1400	0.73	-1.5
1,426,911	+		GFF1400	0.73	+0.2
1,426,911	+		GFF1400	0.73	-0.7
1,426,911	+		GFF1400	0.73	-0.7
1,426,914	-		GFF1400	0.73	+1.2
1,426,919	-		GFF1400	0.74	-1.4
1,426,919	-		GFF1400	0.74	-2.7
1,426,919	-		GFF1400	0.74	-0.4
1,426,934	-		GFF1400	0.76	-0.2
1,426,936	+		GFF1400	0.76	+0.4
1,426,965	+		GFF1400	0.81	-0.7
1,426,965	+		GFF1400	0.81	-0.4
1,426,990	-		GFF1400	0.85	+0.2
1,427,041	-				+0.1
1,427,050	-				+0.4
1,427,051	+				-0.8
1,427,072	+				-1.6
1,427,088	-				-0.9
1,427,118	+				+1.2
1,427,123	+				+0.3
1,427,131	-				-0.0
1,427,150	-				-0.7
1,427,157	+				+0.6
1,427,157	+				-0.6
1,427,157	+				+1.4
1,427,157	+				-1.6
1,427,157	+				-0.2
1,427,157	+				-3.2
1,427,157	+				+0.6
1,427,157	+				-3.1
1,427,165	-				-1.9
1,427,170	+				-0.5
1,427,176	-				-1.5
1,427,180	+				-1.6
1,427,186	-				-0.7
1,427,188	-				-0.8
1,427,194	+		GFF1401	0.10	-0.7
1,427,194	+		GFF1401	0.10	+0.5
1,427,202	-		GFF1401	0.11	-1.4
1,427,202	-		GFF1401	0.11	-0.5
1,427,212	+		GFF1401	0.12	-0.9
1,427,212	+		GFF1401	0.12	-0.0
1,427,212	+		GFF1401	0.12	+0.7
1,427,219	+		GFF1401	0.13	+0.9
1,427,225	-		GFF1401	0.13	-1.2
1,427,225	-		GFF1401	0.13	-0.0
1,427,225	-		GFF1401	0.13	+0.8
1,427,227	-		GFF1401	0.14	-0.5
1,427,227	-		GFF1401	0.14	-0.1
1,427,230	+		GFF1401	0.14	-0.4
1,427,230	+		GFF1401	0.14	+0.1
1,427,230	+		GFF1401	0.14	+0.9
1,427,230	+		GFF1401	0.14	-0.7
1,427,230	+		GFF1401	0.14	-0.1
1,427,233	-		GFF1401	0.14	-1.6
1,427,238	-		GFF1401	0.15	+0.5
1,427,238	-		GFF1401	0.15	-1.8
1,427,238	-		GFF1401	0.15	-2.4
1,427,238	-		GFF1401	0.15	-0.9
1,427,238	-		GFF1401	0.15	+1.0
1,427,273	+		GFF1401	0.18	+0.8
1,427,274	+		GFF1401	0.18	+0.8
1,427,281	-		GFF1401	0.19	-0.8
1,427,289	-		GFF1401	0.20	-0.5
1,427,291	+		GFF1401	0.20	-0.5
1,427,299	-		GFF1401	0.21	+0.3
1,427,318	+		GFF1401	0.23	-0.7
1,427,326	-		GFF1401	0.24	+1.7
1,427,328	-		GFF1401	0.24	-0.7
1,427,341	+		GFF1401	0.25	+0.1
1,427,347	-		GFF1401	0.26	+1.2
1,427,347	-		GFF1401	0.26	+0.6
1,427,347	-		GFF1401	0.26	+0.4
1,427,349	+		GFF1401	0.26	-1.7
1,427,349	+		GFF1401	0.26	-1.5
1,427,349	+		GFF1401	0.26	-0.8
1,427,349	+		GFF1401	0.26	+0.3
1,427,349	+		GFF1401	0.26	-2.7
1,427,349	+		GFF1401	0.26	-0.0
1,427,355	-		GFF1401	0.26	-0.7
1,427,357	-		GFF1401	0.27	-0.2
1,427,357	-		GFF1401	0.27	+1.1
1,427,357	-		GFF1401	0.27	-0.1
1,427,357	-		GFF1401	0.27	-0.1
1,427,357	-		GFF1401	0.27	+0.0
1,427,357	-		GFF1401	0.27	-0.1
1,427,357	-		GFF1401	0.27	+0.2
1,427,357	-		GFF1401	0.27	-0.6
1,427,363	+		GFF1401	0.27	-1.9
1,427,376	-		GFF1401	0.28	-0.9
1,427,418	-		GFF1401	0.33	-0.9
1,427,432	+		GFF1401	0.34	+0.5
1,427,441	-		GFF1401	0.35	-0.6
1,427,453	+		GFF1401	0.36	-0.4
1,427,501	+		GFF1401	0.41	-1.5
1,427,501	+		GFF1401	0.41	+1.8
1,427,501	+		GFF1401	0.41	-1.6
1,427,501	+		GFF1401	0.41	+0.3
1,427,501	+		GFF1401	0.41	-0.9
1,427,501	+		GFF1401	0.41	+0.0
1,427,501	+		GFF1401	0.41	-0.5
1,427,501	+		GFF1401	0.41	-1.0
1,427,501	+		GFF1401	0.41	+0.0
1,427,501	+		GFF1401	0.41	-0.7
1,427,501	+		GFF1401	0.41	+0.1
1,427,501	+		GFF1401	0.41	-1.5
1,427,507	-		GFF1401	0.41	-1.9
1,427,509	-		GFF1401	0.42	+0.2
1,427,509	-		GFF1401	0.42	+0.6
1,427,509	-		GFF1401	0.42	+0.5
1,427,509	-		GFF1401	0.42	-0.4
1,427,509	-		GFF1401	0.42	+0.6
1,427,509	-		GFF1401	0.42	-0.2
1,427,509	-		GFF1401	0.42	+0.9
1,427,509	-		GFF1401	0.42	-0.0
1,427,509	-		GFF1401	0.42	-0.4
1,427,511	+		GFF1401	0.42	-0.9
1,427,511	+		GFF1401	0.42	+1.3
1,427,512	+		GFF1401	0.42	-0.1
1,427,520	+		GFF1401	0.43	-1.0
1,427,528	-		GFF1401	0.44	-1.4
1,427,528	-		GFF1401	0.44	-0.4
1,427,549	-		GFF1401	0.46	+0.5
1,427,554	-		GFF1401	0.46	-1.6
1,427,557	-		GFF1401	0.46	-0.7
1,427,559	-		GFF1401	0.47	-0.2
1,427,621	+		GFF1401	0.53	-0.2
1,427,643	+		GFF1401	0.55	+0.0
1,427,674	+		GFF1401	0.58	-1.0
1,427,675	+		GFF1401	0.58	-1.3
1,427,675	+		GFF1401	0.58	-1.5
1,427,675	+		GFF1401	0.58	-0.5
1,427,675	+		GFF1401	0.58	+0.3
1,427,675	+		GFF1401	0.58	+0.2
1,427,675	+		GFF1401	0.58	-0.4
1,427,675	+		GFF1401	0.58	+0.2
1,427,675	+		GFF1401	0.58	+1.0
1,427,675	+		GFF1401	0.58	-1.5
1,427,678	-		GFF1401	0.58	+1.2
1,427,683	-		GFF1401	0.59	+0.1
1,427,683	-		GFF1401	0.59	-0.5
1,427,683	-		GFF1401	0.59	+0.1
1,427,683	-		GFF1401	0.59	-1.2
1,427,683	-		GFF1401	0.59	+1.0
1,427,683	-		GFF1401	0.59	+1.1
1,427,683	-		GFF1401	0.59	+0.3
1,427,683	-		GFF1401	0.59	-0.9
1,427,685	+		GFF1401	0.59	+0.6
1,427,693	-		GFF1401	0.60	+0.8
1,427,693	-		GFF1401	0.60	-0.5
1,427,695	+		GFF1401	0.60	+0.8
1,427,729	+		GFF1401	0.63	-1.2
1,427,746	-		GFF1401	0.65	+0.7
1,427,763	+		GFF1401	0.67	+0.9
1,427,773	-		GFF1401	0.68	+0.8
1,427,773	-		GFF1401	0.68	+1.1
1,427,787	+		GFF1401	0.69	-0.6
1,427,793	-		GFF1401	0.70	-0.0
1,427,812	+		GFF1401	0.72	-0.3
1,427,812	+		GFF1401	0.72	-0.3
1,427,820	-		GFF1401	0.73	-1.5
1,427,858	+		GFF1401	0.76	-0.7
1,427,858	+		GFF1401	0.76	-0.8
1,427,866	-		GFF1401	0.77	-1.5
1,427,866	-		GFF1401	0.77	-0.3
1,427,866	-		GFF1401	0.77	-1.1
1,427,885	-		GFF1401	0.79	+0.7
1,427,925	+		GFF1401	0.83	-0.7
1,427,925	+		GFF1401	0.83	+0.2
1,427,925	+		GFF1401	0.83	-1.4
1,427,927	+		GFF1401	0.83	+0.3
1,427,945	-		GFF1401	0.85	-2.4
1,427,965	-		GFF1401	0.87	+1.2
1,427,972	+		GFF1401	0.88	+0.2
1,427,979	+		GFF1401	0.88	+0.3
1,427,987	-		GFF1401	0.89	+0.4
1,428,005	+				-2.5
1,428,005	-				+0.5
1,428,026	+				-0.7
1,428,029	+				-1.5
1,428,036	+				-0.0
1,428,039	-				-1.8