Strain Fitness in Sphingobium sp. HT1-2 around GFF1340

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,362,645	-		GFF1338	0.72	+0.6
1,362,657	+		GFF1338	0.74	-0.7
1,362,665	-		GFF1338	0.75	+0.5
1,362,665	-		GFF1338	0.75	-2.6
1,362,688	+		GFF1338	0.79	+0.4
1,362,731	+		GFF1338	0.86	+0.8
1,362,741	+		GFF1338	0.87	-0.7
1,362,742	-		GFF1338	0.88	+1.5
1,362,742	-		GFF1338	0.88	+0.1
1,362,746	+		GFF1338	0.88	-1.2
1,362,746	+		GFF1338	0.88	-0.5
1,362,746	+		GFF1338	0.88	-0.7
1,362,746	+		GFF1338	0.88	+0.7
1,362,764	+				-1.8
1,362,779	+				-0.9
1,362,779	+				+0.6
1,362,779	+				-0.2
1,362,779	+				+0.1
1,362,779	+				+0.9
1,362,779	+				+0.7
1,362,779	+				+1.0
1,362,787	-				-1.1
1,362,787	-				-0.9
1,362,787	-				-1.2
1,362,787	-				+0.2
1,362,808	+				-0.6
1,362,808	+				+1.8
1,362,822	+				-0.1
1,362,858	+				+0.5
1,362,862	+				+0.3
1,362,865	-				+0.3
1,362,866	-				-1.8
1,362,870	-				-1.7
1,362,876	-				-0.5
1,362,876	-				-0.2
1,362,924	+				-0.7
1,362,926	+				-0.2
1,362,934	-				-1.6
1,362,934	-				-1.9
1,362,943	+				+0.0
1,362,943	+				-0.8
1,362,951	-				-0.3
1,362,951	-				-0.1
1,363,025	+				+0.8
1,363,051	-				-0.6
1,363,067	-				+1.1
1,363,090	+				-0.4
1,363,113	-		GFF1339	0.13	-1.8
1,363,168	+		GFF1339	0.25	-0.5
1,363,173	+		GFF1339	0.26	-1.6
1,363,176	-		GFF1339	0.27	+0.2
1,363,181	-		GFF1339	0.28	-2.1
1,363,200	+		GFF1339	0.32	+0.4
1,363,200	+		GFF1339	0.32	+0.1
1,363,200	+		GFF1339	0.32	-0.9
1,363,200	+		GFF1339	0.32	-0.1
1,363,200	+		GFF1339	0.32	+0.4
1,363,205	+		GFF1339	0.33	-0.4
1,363,205	+		GFF1339	0.33	+0.2
1,363,205	+		GFF1339	0.33	+0.1
1,363,208	-		GFF1339	0.34	+0.5
1,363,213	-		GFF1339	0.35	+1.2
1,363,213	-		GFF1339	0.35	-0.9
1,363,213	-		GFF1339	0.35	-2.1
1,363,213	-		GFF1339	0.35	-0.4
1,363,213	-		GFF1339	0.35	+0.7
1,363,215	+		GFF1339	0.35	-0.0
1,363,223	+		GFF1339	0.37	-0.5
1,363,223	-		GFF1339	0.37	-0.5
1,363,237	-		GFF1339	0.40	+0.0
1,363,248	+		GFF1339	0.42	-0.6
1,363,249	+		GFF1339	0.43	+0.4
1,363,280	+		GFF1339	0.49	-0.8
1,363,288	+		GFF1339	0.51	-0.9
1,363,288	+		GFF1339	0.51	-1.1
1,363,288	+		GFF1339	0.51	+0.9
1,363,294	+		GFF1339	0.52	-0.2
1,363,312	+		GFF1339	0.56	-0.8
1,363,312	+		GFF1339	0.56	-0.6
1,363,312	+		GFF1339	0.56	+1.6
1,363,312	+		GFF1339	0.56	+0.3
1,363,317	+		GFF1339	0.57	+1.0
1,363,320	-		GFF1339	0.58	+0.2
1,363,320	-		GFF1339	0.58	-0.9
1,363,320	-		GFF1339	0.58	+0.9
1,363,325	-		GFF1339	0.59	-0.4
1,363,327	+		GFF1339	0.60	-2.4
1,363,335	-		GFF1339	0.61	+0.4
1,363,345	-		GFF1339	0.64	-1.2
1,363,348	+		GFF1339	0.64	-0.3
1,363,357	+		GFF1339	0.66	-0.2
1,363,359	+		GFF1339	0.67	-0.8
1,363,359	+		GFF1339	0.67	+0.5
1,363,359	+		GFF1339	0.67	-0.3
1,363,359	+		GFF1339	0.67	+0.5
1,363,359	+		GFF1339	0.67	+0.4
1,363,359	+		GFF1339	0.67	+0.3
1,363,359	+		GFF1339	0.67	+1.0
1,363,359	+		GFF1339	0.67	+0.1
1,363,359	+		GFF1339	0.67	-0.5
1,363,359	+		GFF1339	0.67	+1.0
1,363,367	-		GFF1339	0.68	+0.1
1,363,367	-		GFF1339	0.68	-0.9
1,363,367	-		GFF1339	0.68	-0.4
1,363,367	-		GFF1339	0.68	+0.2
1,363,367	-		GFF1339	0.68	+1.3
1,363,367	-		GFF1339	0.68	-2.1
1,363,368	-		GFF1339	0.69	-1.9
1,363,377	-		GFF1339	0.71	-0.1
1,363,379	+		GFF1339	0.71	+0.2
1,363,387	-		GFF1339	0.73	+0.8
1,363,387	-		GFF1339	0.73	-0.9
1,363,398	+		GFF1339	0.75	-0.7
1,363,409	+		GFF1339	0.78	-2.2
1,363,415	+		GFF1339	0.79	+0.2
1,363,456	+		GFF1339	0.88	+0.6
1,363,456	+		GFF1339	0.88	-1.7
1,363,456	+		GFF1339	0.88	-0.7
1,363,490	-				-2.9
1,363,492	+				-0.1
1,363,518	+				+0.6
1,363,518	+				-0.2
1,363,518	+				-1.6
1,363,526	-				-0.2
1,363,591	+				-0.4
1,363,598	-				+1.0
1,363,605	-				+0.1
1,363,670	+		GFF1340	0.20	+0.7
1,363,678	-		GFF1340	0.24	+1.4
1,363,698	+		GFF1340	0.33	+0.7
1,363,711	+		GFF1340	0.39	-0.7
1,363,726	-		GFF1340	0.46	+0.2
1,363,730	+		GFF1340	0.48	-1.0
1,363,734	-		GFF1340	0.50	+0.4
1,363,740	-		GFF1340	0.53	-0.5
1,363,765	+		GFF1340	0.64	-1.5
1,363,795	+		GFF1340	0.78	+0.8
1,363,817	+		GFF1340	0.88	-1.5
1,363,817	+		GFF1340	0.88	+1.1
1,363,820	-				+0.4
1,363,822	+				+0.1
1,363,822	+				-2.7
1,363,822	+				+0.2
1,363,822	+				-0.4
1,363,822	+				-0.7
1,363,825	-				-0.6
1,363,825	-				-1.2
1,363,825	-				+0.4
1,363,827	+				-0.3
1,363,830	+				+0.5
1,363,830	-				+0.8
1,363,830	-				+0.8
1,363,832	+				+0.2
1,363,832	+				-0.4
1,363,832	+				-0.6
1,363,835	-				-0.3
1,363,835	-				+0.1
1,363,837	+				-2.1
1,363,840	-				-0.4
1,363,846	-				+0.4
1,363,855	+				+0.2
1,363,855	+				+0.1
1,363,855	+				-1.6
1,363,855	+				-0.7
1,363,855	+				+0.2
1,363,863	-				-0.8
1,363,863	-				+0.1
1,363,863	-				-0.6
1,363,863	-				+0.2
1,363,863	-				-0.3
1,363,863	-				+0.0
1,363,863	-				-1.0
1,363,865	-				+0.0
1,363,889	-				+1.2
1,363,898	+				+0.0
1,363,925	-				-1.5
1,363,928	+				+0.7
1,363,929	+				-0.4
1,363,929	+				-1.7
1,363,929	+				-0.8
1,363,930	+				+0.2
1,363,932	+				-0.5
1,363,932	+				+0.4
1,363,932	+				+0.6
1,363,939	+				+0.6
1,363,939	+				+1.0
1,363,940	-				+1.1
1,363,945	+				-0.9
1,363,947	+				-1.4
1,363,947	+				+0.3
1,363,947	-				-0.5
1,363,947	-				+0.5
1,363,947	-				-1.4
1,363,953	-				-0.9
1,363,955	-				-0.1
1,363,959	-				-0.0
1,363,959	-				+0.1
1,363,971	+				+0.0
1,363,981	+				-0.8
1,363,981	+				+0.1
1,363,989	-				+0.2
1,363,989	-				+0.2
1,364,045	-				+0.5
1,364,045	-				+0.5
1,364,055	-				-1.4
1,364,055	-				+1.2
1,364,059	+				+0.1
1,364,076	+				-0.9
1,364,089	-				-0.1
1,364,227	+				-0.6
1,364,342	-				-0.4
1,364,370	+				-0.3
1,364,377	+				-0.5
1,364,377	+				-0.0
1,364,377	+				-1.0
1,364,377	+				+0.4
1,364,377	+				-0.6
1,364,377	+				-1.4
1,364,377	+				-0.4
1,364,377	+				-0.5
1,364,377	+				-0.9
1,364,385	-				-1.3
1,364,385	-				+0.1
1,364,385	-				-0.4
1,364,385	-				-0.1
1,364,385	-				-0.5
1,364,385	-				+0.4
1,364,385	-				-2.1
1,364,385	-				-1.0
1,364,385	-				+1.1
1,364,385	-				-0.9
1,364,385	-				-0.9
1,364,385	-				-0.4
1,364,471	-				+1.8
1,364,495	-				+0.5
1,364,495	-				+0.9
1,364,497	+				-0.7
1,364,503	+				+1.6
1,364,504	-				+0.5
1,364,505	+				+0.1
1,364,505	+				-0.7
1,364,511	-				-1.5
1,364,537	+				+0.5
1,364,537	+				+0.4
1,364,545	-				+0.1
1,364,545	-				+1.0
1,364,545	-				+0.6
1,364,555	+		GFF1341	0.10	+0.4
1,364,555	+		GFF1341	0.10	+1.0
1,364,555	+		GFF1341	0.10	-1.2
1,364,555	+		GFF1341	0.10	-0.2
1,364,555	+		GFF1341	0.10	+1.0
1,364,563	-		GFF1341	0.11	-1.0
1,364,563	-		GFF1341	0.11	-0.9
1,364,563	-		GFF1341	0.11	-0.4
1,364,563	-		GFF1341	0.11	+1.0
1,364,563	-		GFF1341	0.11	+0.1
1,364,563	-		GFF1341	0.11	+1.0
1,364,563	-		GFF1341	0.11	-0.2
1,364,563	-		GFF1341	0.11	-0.8
1,364,563	-		GFF1341	0.11	-0.1
1,364,563	-		GFF1341	0.11	+1.5
1,364,563	-		GFF1341	0.11	-0.0
1,364,563	-		GFF1341	0.11	+0.4
1,364,563	-		GFF1341	0.11	-0.3
1,364,570	+		GFF1341	0.12	+0.7
1,364,589	-		GFF1341	0.13	+0.8
1,364,589	-		GFF1341	0.13	+0.6
1,364,591	-		GFF1341	0.13	-2.5
1,364,598	+		GFF1341	0.14	-0.1
1,364,598	+		GFF1341	0.14	-0.4
1,364,601	-		GFF1341	0.14	-0.5
1,364,602	+		GFF1341	0.14	-0.4
1,364,602	+		GFF1341	0.14	+1.2
1,364,605	-		GFF1341	0.14	-0.5
1,364,624	+		GFF1341	0.16	-1.1
1,364,632	-		GFF1341	0.17	-0.0
1,364,632	-		GFF1341	0.17	-1.2
1,364,632	-		GFF1341	0.17	+0.3
1,364,637	-		GFF1341	0.17	+0.5
1,364,641	-		GFF1341	0.17	-0.0
1,364,647	+		GFF1341	0.18	-0.6
1,364,647	+		GFF1341	0.18	+1.1
1,364,647	+		GFF1341	0.18	-0.3
1,364,648	+		GFF1341	0.18	+0.6
1,364,648	+		GFF1341	0.18	+0.3
1,364,648	+		GFF1341	0.18	-0.7
1,364,655	-		GFF1341	0.19	-1.5
1,364,655	-		GFF1341	0.19	+0.1
1,364,655	-		GFF1341	0.19	-0.2
1,364,656	-		GFF1341	0.19	+1.0
1,364,657	-		GFF1341	0.19	+0.1
1,364,687	+		GFF1341	0.21	+0.2
1,364,697	+		GFF1341	0.22	+1.4
1,364,697	+		GFF1341	0.22	+0.9
1,364,700	-		GFF1341	0.22	+0.7
1,364,702	+		GFF1341	0.22	+1.6
1,364,702	+		GFF1341	0.22	-0.1
1,364,702	+		GFF1341	0.22	+0.3
1,364,702	+		GFF1341	0.22	-0.9
1,364,705	-		GFF1341	0.23	-1.4
1,364,710	-		GFF1341	0.23	+0.8
1,364,710	-		GFF1341	0.23	-1.4
1,364,727	+		GFF1341	0.24	+1.2
1,364,727	+		GFF1341	0.24	-0.6
1,364,732	+		GFF1341	0.25	-1.3
1,364,732	+		GFF1341	0.25	+0.9
1,364,732	+		GFF1341	0.25	+0.2
1,364,732	+		GFF1341	0.25	+0.5
1,364,738	+		GFF1341	0.25	-0.4
1,364,740	+		GFF1341	0.25	-0.2
1,364,740	-		GFF1341	0.25	-1.8
1,364,740	-		GFF1341	0.25	-0.0
1,364,740	-		GFF1341	0.25	+0.2
1,364,740	-		GFF1341	0.25	+0.4
1,364,740	-		GFF1341	0.25	-0.5
1,364,740	-		GFF1341	0.25	+0.1
1,364,740	-		GFF1341	0.25	+1.6
1,364,747	+		GFF1341	0.26	+0.3
1,364,760	+		GFF1341	0.27	-0.5
1,364,778	+		GFF1341	0.29	+0.2
1,364,800	-		GFF1341	0.30	+1.0
1,364,801	-		GFF1341	0.30	-1.5
1,364,811	+		GFF1341	0.31	-0.5
1,364,830	+		GFF1341	0.33	-1.2
1,364,834	+		GFF1341	0.33	+0.1