Strain Fitness in Sphingobium sp. HT1-2 around GFF1246

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,273,514	+				+1.6
1,273,523	+				+0.1
1,273,557	-				+0.4
1,273,560	+				-2.1
1,273,574	-				+0.4
1,273,583	-				+0.8
1,273,592	-				-1.6
1,273,610	-				-0.5
1,273,611	-				+0.7
1,273,626	+		GFF1245	0.10	-0.3
1,273,628	+		GFF1245	0.10	-2.2
1,273,628	+		GFF1245	0.10	-1.1
1,273,628	+		GFF1245	0.10	-1.5
1,273,628	+		GFF1245	0.10	+0.1
1,273,636	-		GFF1245	0.11	+0.4
1,273,636	-		GFF1245	0.11	-0.2
1,273,636	-		GFF1245	0.11	+0.8
1,273,636	-		GFF1245	0.11	-1.6
1,273,643	+		GFF1245	0.12	-3.0
1,273,651	-		GFF1245	0.13	+0.4
1,273,651	-		GFF1245	0.13	+0.4
1,273,651	-		GFF1245	0.13	-0.2
1,273,687	+		GFF1245	0.16	+0.1
1,273,697	-		GFF1245	0.17	-0.9
1,273,699	-		GFF1245	0.17	+0.2
1,273,699	-		GFF1245	0.17	+0.8
1,273,702	-		GFF1245	0.18	-0.1
1,273,705	+		GFF1245	0.18	-1.2
1,273,713	-		GFF1245	0.19	+1.7
1,273,713	-		GFF1245	0.19	-0.6
1,273,713	-		GFF1245	0.19	-1.2
1,273,715	+		GFF1245	0.19	-0.5
1,273,723	-		GFF1245	0.20	-0.9
1,273,728	+		GFF1245	0.20	-0.4
1,273,728	+		GFF1245	0.20	+0.3
1,273,728	+		GFF1245	0.20	+0.2
1,273,728	+		GFF1245	0.20	-1.1
1,273,736	-		GFF1245	0.21	+1.1
1,273,738	+		GFF1245	0.21	-0.4
1,273,738	+		GFF1245	0.21	-2.4
1,273,738	-		GFF1245	0.21	+0.4
1,273,761	+		GFF1245	0.24	-0.6
1,273,762	-		GFF1245	0.24	-1.7
1,273,764	-		GFF1245	0.24	+0.8
1,273,764	-		GFF1245	0.24	+0.2
1,273,784	+		GFF1245	0.26	-1.0
1,273,792	-		GFF1245	0.27	+1.1
1,273,792	-		GFF1245	0.27	+0.0
1,273,792	-		GFF1245	0.27	+0.6
1,273,792	-		GFF1245	0.27	-1.7
1,273,800	-		GFF1245	0.28	+1.8
1,273,808	+		GFF1245	0.28	-0.6
1,273,816	-		GFF1245	0.29	+1.6
1,273,828	-		GFF1245	0.30	+1.1
1,273,842	-		GFF1245	0.32	+0.8
1,273,852	+		GFF1245	0.33	+0.4
1,273,866	+		GFF1245	0.34	-0.7
1,273,866	+		GFF1245	0.34	-0.3
1,273,866	+		GFF1245	0.34	+0.8
1,273,866	+		GFF1245	0.34	-0.9
1,273,866	+		GFF1245	0.34	-0.3
1,273,866	+		GFF1245	0.34	+1.8
1,273,866	+		GFF1245	0.34	-1.2
1,273,866	+		GFF1245	0.34	+0.3
1,273,866	+		GFF1245	0.34	+0.7
1,273,867	-		GFF1245	0.34	+0.3
1,273,874	-		GFF1245	0.35	+1.8
1,273,874	-		GFF1245	0.35	-2.0
1,273,874	-		GFF1245	0.35	-0.1
1,273,874	-		GFF1245	0.35	+1.4
1,273,874	-		GFF1245	0.35	-0.5
1,273,874	-		GFF1245	0.35	+0.1
1,273,874	-		GFF1245	0.35	-0.6
1,273,874	-		GFF1245	0.35	-0.6
1,273,874	-		GFF1245	0.35	-0.5
1,273,874	-		GFF1245	0.35	-0.9
1,273,883	+		GFF1245	0.36	-0.7
1,273,883	+		GFF1245	0.36	-1.8
1,273,883	+		GFF1245	0.36	+0.3
1,273,883	+		GFF1245	0.36	+0.3
1,273,883	+		GFF1245	0.36	-1.9
1,273,883	+		GFF1245	0.36	+0.1
1,273,886	-		GFF1245	0.36	-0.6
1,273,889	-		GFF1245	0.37	+0.9
1,273,891	-		GFF1245	0.37	+0.0
1,273,891	-		GFF1245	0.37	-1.2
1,273,891	-		GFF1245	0.37	-1.8
1,273,891	-		GFF1245	0.37	-1.1
1,273,891	-		GFF1245	0.37	+1.6
1,273,891	-		GFF1245	0.37	+0.4
1,273,901	-		GFF1245	0.38	-2.2
1,273,907	-		GFF1245	0.39	-1.0
1,273,914	+		GFF1245	0.39	-0.4
1,273,915	+		GFF1245	0.39	-1.4
1,273,921	+		GFF1245	0.40	-0.7
1,273,923	-		GFF1245	0.40	-0.7
1,273,923	-		GFF1245	0.40	+0.1
1,273,923	-		GFF1245	0.40	+0.1
1,273,923	-		GFF1245	0.40	+0.2
1,273,926	+		GFF1245	0.40	-1.0
1,273,928	-		GFF1245	0.41	-2.2
1,273,934	-		GFF1245	0.41	-0.1
1,273,939	-		GFF1245	0.42	-0.4
1,273,943	+		GFF1245	0.42	+0.2
1,273,961	+		GFF1245	0.44	-1.1
1,273,961	+		GFF1245	0.44	-1.2
1,273,961	+		GFF1245	0.44	-2.3
1,274,016	-		GFF1245	0.50	-0.8
1,274,026	-		GFF1245	0.51	-0.5
1,274,028	+		GFF1245	0.51	+0.7
1,274,036	-		GFF1245	0.52	+0.5
1,274,036	-		GFF1245	0.52	+0.1
1,274,038	-		GFF1245	0.52	+0.1
1,274,043	+		GFF1245	0.52	-0.1
1,274,057	-		GFF1245	0.54	+0.2
1,274,074	-		GFF1245	0.55	+1.0
1,274,097	+		GFF1245	0.58	-1.7
1,274,141	+		GFF1245	0.62	-0.4
1,274,149	-		GFF1245	0.63	+0.8
1,274,154	-		GFF1245	0.64	+0.2
1,274,159	+		GFF1245	0.64	-0.4
1,274,159	+		GFF1245	0.64	-0.1
1,274,167	-		GFF1245	0.65	-2.3
1,274,174	+		GFF1245	0.66	-1.4
1,274,185	+		GFF1245	0.67	-0.7
1,274,185	+		GFF1245	0.67	-0.2
1,274,198	-		GFF1245	0.68	+0.1
1,274,212	+		GFF1245	0.69	+0.1
1,274,212	+		GFF1245	0.69	+1.0
1,274,213	-		GFF1245	0.70	-0.1
1,274,216	-		GFF1245	0.70	+1.2
1,274,220	-		GFF1245	0.70	-0.4
1,274,220	-		GFF1245	0.70	-1.5
1,274,222	+		GFF1245	0.70	+1.3
1,274,223	+		GFF1245	0.71	+0.4
1,274,231	-		GFF1245	0.71	+0.1
1,274,231	-		GFF1245	0.71	+0.7
1,274,231	-		GFF1245	0.71	+0.9
1,274,231	-		GFF1245	0.71	+0.3
1,274,240	+		GFF1245	0.72	-0.3
1,274,240	+		GFF1245	0.72	-0.0
1,274,240	+		GFF1245	0.72	-0.4
1,274,248	-		GFF1245	0.73	+0.1
1,274,248	-		GFF1245	0.73	-2.0
1,274,290	-		GFF1245	0.77	+1.0
1,274,295	+		GFF1245	0.78	-0.1
1,274,298	-		GFF1245	0.78	+0.9
1,274,309	+		GFF1245	0.79	-1.2
1,274,317	-		GFF1245	0.80	+0.3
1,274,317	-		GFF1245	0.80	-0.6
1,274,319	+		GFF1245	0.80	-0.8
1,274,319	+		GFF1245	0.80	-0.2
1,274,327	-		GFF1245	0.81	-0.0
1,274,327	-		GFF1245	0.81	-0.2
1,274,327	-		GFF1245	0.81	+0.4
1,274,327	-		GFF1245	0.81	-0.4
1,274,335	+		GFF1245	0.82	+0.3
1,274,342	+		GFF1245	0.83	+0.3
1,274,342	+		GFF1245	0.83	+0.0
1,274,342	+		GFF1245	0.83	+0.1
1,274,371	+		GFF1245	0.86	-1.5
1,274,409	+		GFF1245	0.89	-1.9
1,274,430	-				-1.7
1,274,447	-				-0.2
1,274,456	+				-1.9
1,274,467	+				+1.1
1,274,469	-				+0.3
1,274,487	+				+0.4
1,274,515	+				+0.4
1,274,516	-				-2.6
1,274,569	+		GFF1246	0.11	+0.7
1,274,569	+		GFF1246	0.11	-2.1
1,274,569	+		GFF1246	0.11	-0.5
1,274,569	+		GFF1246	0.11	-1.2
1,274,569	+		GFF1246	0.11	+0.8
1,274,569	+		GFF1246	0.11	-2.7
1,274,569	+		GFF1246	0.11	-0.1
1,274,571	+		GFF1246	0.12	-1.5
1,274,577	-		GFF1246	0.13	-2.4
1,274,577	-		GFF1246	0.13	-0.5
1,274,577	-		GFF1246	0.13	-2.0
1,274,577	-		GFF1246	0.13	+0.7
1,274,577	-		GFF1246	0.13	-0.5
1,274,577	-		GFF1246	0.13	-0.8
1,274,584	+		GFF1246	0.14	-1.0
1,274,584	+		GFF1246	0.14	+0.4
1,274,584	+		GFF1246	0.14	-0.1
1,274,590	+		GFF1246	0.15	-1.5
1,274,592	-		GFF1246	0.16	-1.0
1,274,592	-		GFF1246	0.16	+1.4
1,274,592	-		GFF1246	0.16	-0.8
1,274,592	-		GFF1246	0.16	+0.4
1,274,592	-		GFF1246	0.16	+0.3
1,274,592	-		GFF1246	0.16	-1.2
1,274,592	-		GFF1246	0.16	-0.4
1,274,592	-		GFF1246	0.16	+0.2
1,274,635	+		GFF1246	0.24	+0.4
1,274,661	+		GFF1246	0.29	-0.2
1,274,661	+		GFF1246	0.29	-0.2
1,274,669	-		GFF1246	0.30	+0.5
1,274,669	-		GFF1246	0.30	-0.5
1,274,669	-		GFF1246	0.30	+0.3
1,274,669	-		GFF1246	0.30	+0.2
1,274,674	-		GFF1246	0.31	-0.4
1,274,676	+		GFF1246	0.31	-0.2
1,274,677	+		GFF1246	0.32	+0.6
1,274,677	-		GFF1246	0.32	-1.4
1,274,691	+		GFF1246	0.34	-1.1
1,274,691	+		GFF1246	0.34	+0.7
1,274,691	+		GFF1246	0.34	+0.5
1,274,696	+		GFF1246	0.35	-0.9
1,274,696	+		GFF1246	0.35	+0.4
1,274,696	+		GFF1246	0.35	-0.4
1,274,696	+		GFF1246	0.35	+0.4
1,274,699	-		GFF1246	0.36	-1.8
1,274,699	-		GFF1246	0.36	+0.8
1,274,704	-		GFF1246	0.37	-0.8
1,274,704	-		GFF1246	0.37	+0.3
1,274,704	-		GFF1246	0.37	-1.6
1,274,709	-		GFF1246	0.38	-0.5
1,274,715	+		GFF1246	0.39	-1.2
1,274,715	+		GFF1246	0.39	-0.3
1,274,715	+		GFF1246	0.39	+1.4
1,274,715	+		GFF1246	0.39	-1.8
1,274,715	+		GFF1246	0.39	-0.8
1,274,715	+		GFF1246	0.39	-0.5
1,274,715	+		GFF1246	0.39	-3.1
1,274,715	+		GFF1246	0.39	-1.6
1,274,715	+		GFF1246	0.39	+1.6
1,274,715	+		GFF1246	0.39	+0.2
1,274,715	+		GFF1246	0.39	-0.1
1,274,715	+		GFF1246	0.39	-0.3
1,274,723	-		GFF1246	0.40	+0.8
1,274,723	-		GFF1246	0.40	+0.4
1,274,723	-		GFF1246	0.40	+0.3
1,274,723	-		GFF1246	0.40	-1.1
1,274,723	-		GFF1246	0.40	+0.1
1,274,723	-		GFF1246	0.40	-2.5
1,274,723	-		GFF1246	0.40	-1.9
1,274,723	-		GFF1246	0.40	-0.7
1,274,777	+		GFF1246	0.51	-0.2
1,274,788	+		GFF1246	0.53	+0.4
1,274,818	+		GFF1246	0.58	-0.0
1,274,818	-		GFF1246	0.58	-1.4
1,274,826	-		GFF1246	0.60	-0.7
1,274,827	-		GFF1246	0.60	-1.0
1,274,830	+		GFF1246	0.61	+1.4
1,274,834	+		GFF1246	0.61	-1.7
1,274,834	-		GFF1246	0.61	+0.6
1,274,841	+		GFF1246	0.63	-0.5
1,274,848	+		GFF1246	0.64	-0.6
1,274,853	+		GFF1246	0.65	+0.0
1,274,857	+		GFF1246	0.66	-0.2
1,274,858	+		GFF1246	0.66	-0.0
1,274,873	-		GFF1246	0.69	-0.4
1,274,918	-		GFF1246	0.77	-0.3
1,274,928	+		GFF1246	0.79	+1.4
1,274,933	+		GFF1246	0.80	-0.5
1,274,933	+		GFF1246	0.80	-1.4
1,274,933	+		GFF1246	0.80	+0.1
1,274,933	+		GFF1246	0.80	-0.3
1,274,938	+		GFF1246	0.81	-2.4
1,274,938	+		GFF1246	0.81	+0.9
1,274,938	+		GFF1246	0.81	-0.4
1,274,938	+		GFF1246	0.81	-1.4
1,274,938	+		GFF1246	0.81	-0.9
1,274,938	+		GFF1246	0.81	-0.8
1,274,938	+		GFF1246	0.81	-0.3
1,274,938	+		GFF1246	0.81	-0.8
1,274,941	-		GFF1246	0.82	+0.0
1,274,941	-		GFF1246	0.82	-1.0
1,274,941	-		GFF1246	0.82	-0.1
1,274,943	+		GFF1246	0.82	-0.9
1,274,943	+		GFF1246	0.82	+0.8
1,274,943	+		GFF1246	0.82	-0.4
1,274,943	+		GFF1246	0.82	+0.4
1,274,943	+		GFF1246	0.82	-0.8
1,274,946	-		GFF1246	0.83	-1.0
1,274,946	-		GFF1246	0.83	+0.3
1,274,946	-		GFF1246	0.83	+0.1
1,274,946	-		GFF1246	0.83	+0.4
1,274,946	-		GFF1246	0.83	+0.1
1,274,946	-		GFF1246	0.83	+1.0
1,274,946	-		GFF1246	0.83	+0.4
1,274,946	-		GFF1246	0.83	-1.2
1,274,951	-		GFF1246	0.84	-1.9
1,274,951	-		GFF1246	0.84	-1.1
1,274,951	-		GFF1246	0.84	+1.1
1,274,951	-		GFF1246	0.84	-0.4
1,274,951	-		GFF1246	0.84	-0.3
1,274,951	-		GFF1246	0.84	-0.9
1,274,975	+		GFF1246	0.88	-2.2
1,274,987	+				+1.1
1,274,995	-				+0.8
1,274,995	-				-0.8
1,275,002	-				+0.1
1,275,006	+				-0.6
1,275,014	-				-1.7
1,275,020	+				+0.7
1,275,020	+				-2.2
1,275,027	+				+0.4
1,275,073	+				+0.4
1,275,081	-				+0.5
1,275,092	+				+0.2
1,275,092	+				-0.2
1,275,092	+				-1.4
1,275,100	-				-1.6
1,275,100	-				+0.1
1,275,100	-				-2.1
1,275,100	-				+0.8
1,275,116	+				+0.2
1,275,143	+				+0.4
1,275,145	-				+0.4
1,275,154	+				+0.3
1,275,154	+				+0.1
1,275,162	-				+0.1
1,275,162	-				+0.6
1,275,175	+				+1.2
1,275,175	+				-2.6
1,275,175	+				-1.2
1,275,175	+				-0.6
1,275,175	+				-0.2
1,275,181	+				+0.1
1,275,181	+				+0.2
1,275,183	-				-2.2
1,275,183	-				-2.1
1,275,183	-				+0.2
1,275,183	-				-0.4
1,275,183	-				+0.1
1,275,189	-				-0.4
1,275,189	-				-0.2
1,275,189	-				+0.7
1,275,197	+				-0.9
1,275,219	+				+0.1
1,275,222	-				+0.5
1,275,245	+				+0.4
1,275,245	+				-0.1
1,275,260	+				+0.0
1,275,273	+				-1.5
1,275,278	+				-0.1
1,275,278	+				+1.1
1,275,278	+				-0.9
1,275,279	-				-0.1
1,275,279	-				+0.9
1,275,281	-				-0.8
1,275,286	-				-1.9
1,275,303	+				-0.5
1,275,303	-				+0.9
1,275,307	+				+0.3
1,275,329	+		GFF1247	0.10	-0.0
1,275,339	-		GFF1247	0.11	+1.0
1,275,344	-		GFF1247	0.11	-0.6
1,275,345	-		GFF1247	0.11	+0.5
1,275,392	+		GFF1247	0.13	-0.9
1,275,404	+		GFF1247	0.14	-0.0
1,275,405	+		GFF1247	0.14	-0.5
1,275,413	-		GFF1247	0.14	+1.7
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1,275,413	-		GFF1247	0.14	-2.3
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1,275,415	+		GFF1247	0.14	-0.1
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1,275,466	+		GFF1247	0.16	-1.4
1,275,477	+		GFF1247	0.17	-2.3
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1,275,503	-		GFF1247	0.18	-0.3
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1,275,539	+		GFF1247	0.20	-1.7
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1,275,609	+		GFF1247	0.23	-0.6
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1,275,617	-		GFF1247	0.23	-0.8
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1,275,644	+		GFF1247	0.25	-1.8
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1,275,687	-		GFF1247	0.27	-2.1
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1,275,717	+		GFF1247	0.28	-1.3
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1,275,720	-		GFF1247	0.28	+1.0
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1,275,754	-		GFF1247	0.30	-1.1
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1,275,759	+		GFF1247	0.30	-2.1
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1,275,759	+		GFF1247	0.30	+0.4
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1,275,829	+		GFF1247	0.33	-1.1
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1,275,880	+		GFF1247	0.36	-0.7
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1,275,880	+		GFF1247	0.36	-1.9
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1,275,880	+		GFF1247	0.36	-0.9
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1,275,882	+		GFF1247	0.36	-0.9
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1,275,888	-		GFF1247	0.36	-0.7
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1,275,957	-		GFF1247	0.39	-2.1
1,275,958	-		GFF1247	0.39	-2.9
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1,276,025	+		GFF1247	0.42	+0.1
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