Strain Fitness in Sphingobium sp. HT1-2 around GFF1242

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,268,524	+				-0.8
1,268,524	+				-0.7
1,268,524	+				+0.4
1,268,524	+				-0.2
1,268,534	+				-0.2
1,268,575	+		GFF1241	0.13	+0.6
1,268,578	+		GFF1241	0.14	-1.4
1,268,578	-		GFF1241	0.14	-0.2
1,268,578	-		GFF1241	0.14	+0.1
1,268,583	-		GFF1241	0.14	-1.0
1,268,583	-		GFF1241	0.14	-1.2
1,268,586	-		GFF1241	0.15	-0.4
1,268,586	-		GFF1241	0.15	-0.1
1,268,596	-		GFF1241	0.16	-1.5
1,268,608	+		GFF1241	0.17	+0.0
1,268,621	-		GFF1241	0.18	+0.8
1,268,623	+		GFF1241	0.18	+1.2
1,268,631	+		GFF1241	0.19	+0.2
1,268,639	-		GFF1241	0.20	+0.6
1,268,652	+		GFF1241	0.21	-2.0
1,268,652	+		GFF1241	0.21	+0.2
1,268,660	-		GFF1241	0.22	-0.8
1,268,662	-		GFF1241	0.22	-1.0
1,268,685	-		GFF1241	0.24	+1.4
1,268,718	+		GFF1241	0.28	+0.8
1,268,718	+		GFF1241	0.28	-0.1
1,268,718	+		GFF1241	0.28	+0.5
1,268,726	-		GFF1241	0.29	-0.6
1,268,726	-		GFF1241	0.29	+0.7
1,268,726	-		GFF1241	0.29	-0.3
1,268,726	-		GFF1241	0.29	-0.4
1,268,726	-		GFF1241	0.29	+0.8
1,268,726	-		GFF1241	0.29	-0.4
1,268,726	-		GFF1241	0.29	-0.2
1,268,726	-		GFF1241	0.29	-1.3
1,268,729	+		GFF1241	0.29	+0.6
1,268,776	+		GFF1241	0.34	+0.4
1,268,779	-		GFF1241	0.34	-1.0
1,268,833	-		GFF1241	0.39	+0.9
1,268,841	+		GFF1241	0.40	-0.1
1,268,857	-		GFF1241	0.42	+0.8
1,268,860	+		GFF1241	0.42	-0.2
1,268,866	+		GFF1241	0.43	-1.7
1,268,870	+		GFF1241	0.43	+0.7
1,268,896	+		GFF1241	0.46	-0.6
1,268,914	+		GFF1241	0.47	+0.9
1,268,937	-		GFF1241	0.50	-0.9
1,268,939	+		GFF1241	0.50	-1.2
1,268,988	+		GFF1241	0.55	-0.2
1,268,992	+		GFF1241	0.55	-1.8
1,268,993	-		GFF1241	0.55	-0.7
1,269,000	+		GFF1241	0.56	-1.2
1,269,000	-		GFF1241	0.56	-0.4
1,269,000	-		GFF1241	0.56	-0.7
1,269,000	-		GFF1241	0.56	-1.6
1,269,008	-		GFF1241	0.57	-1.4
1,269,008	-		GFF1241	0.57	-3.0
1,269,022	+		GFF1241	0.58	+0.3
1,269,022	+		GFF1241	0.58	+0.1
1,269,036	-		GFF1241	0.60	+0.6
1,269,038	-		GFF1241	0.60	+1.0
1,269,045	+		GFF1241	0.61	+0.2
1,269,045	+		GFF1241	0.61	-0.7
1,269,045	+		GFF1241	0.61	-2.4
1,269,047	+		GFF1241	0.61	+0.1
1,269,047	+		GFF1241	0.61	+0.2
1,269,047	+		GFF1241	0.61	-0.1
1,269,047	+		GFF1241	0.61	+0.4
1,269,047	+		GFF1241	0.61	+0.0
1,269,047	+		GFF1241	0.61	-1.1
1,269,047	+		GFF1241	0.61	-0.1
1,269,047	+		GFF1241	0.61	+0.6
1,269,055	-		GFF1241	0.62	-1.0
1,269,055	-		GFF1241	0.62	-1.2
1,269,065	-		GFF1241	0.63	+0.1
1,269,065	-		GFF1241	0.63	-0.1
1,269,071	+		GFF1241	0.63	-2.7
1,269,121	-		GFF1241	0.68	-3.1
1,269,121	-		GFF1241	0.68	+0.3
1,269,135	-		GFF1241	0.70	-1.9
1,269,135	-		GFF1241	0.70	-0.8
1,269,135	-		GFF1241	0.70	-1.5
1,269,141	-		GFF1241	0.70	+0.6
1,269,190	-		GFF1241	0.75	-0.2
1,269,213	+		GFF1241	0.78	-0.5
1,269,213	+		GFF1241	0.78	-1.4
1,269,213	+		GFF1241	0.78	-1.8
1,269,214	+		GFF1241	0.78	+0.3
1,269,214	+		GFF1241	0.78	-1.6
1,269,221	-		GFF1241	0.78	+0.7
1,269,223	+		GFF1241	0.79	+0.1
1,269,223	+		GFF1241	0.79	-0.3
1,269,223	+		GFF1241	0.79	-0.5
1,269,223	+		GFF1241	0.79	+0.4
1,269,223	+		GFF1241	0.79	+1.0
1,269,231	-		GFF1241	0.79	+0.7
1,269,231	-		GFF1241	0.79	-1.2
1,269,231	-		GFF1241	0.79	+0.5
1,269,231	-		GFF1241	0.79	-0.3
1,269,231	-		GFF1241	0.79	-1.7
1,269,231	-		GFF1241	0.79	-0.0
1,269,244	+		GFF1241	0.81	-1.9
1,269,244	+		GFF1241	0.81	-1.4
1,269,244	+		GFF1241	0.81	+0.7
1,269,244	+		GFF1241	0.81	-0.6
1,269,244	+		GFF1241	0.81	+0.2
1,269,244	+		GFF1241	0.81	-0.3
1,269,244	+		GFF1241	0.81	+1.6
1,269,244	+		GFF1241	0.81	+0.0
1,269,244	+		GFF1241	0.81	+0.5
1,269,246	+		GFF1241	0.81	-0.2
1,269,246	-		GFF1241	0.81	+1.0
1,269,252	-		GFF1241	0.81	-0.5
1,269,252	-		GFF1241	0.81	-1.5
1,269,252	-		GFF1241	0.81	-2.2
1,269,252	-		GFF1241	0.81	+0.1
1,269,252	-		GFF1241	0.81	-0.3
1,269,252	-		GFF1241	0.81	+0.1
1,269,252	-		GFF1241	0.81	-1.8
1,269,252	-		GFF1241	0.81	-0.9
1,269,258	-		GFF1241	0.82	-1.4
1,269,291	+		GFF1241	0.85	+0.2
1,269,291	+		GFF1241	0.85	+0.1
1,269,291	+		GFF1241	0.85	-1.7
1,269,291	+		GFF1241	0.85	-0.4
1,269,291	+		GFF1241	0.85	+0.4
1,269,299	-		GFF1241	0.86	-0.2
1,269,299	-		GFF1241	0.86	-2.4
1,269,299	-		GFF1241	0.86	-0.5
1,269,299	-		GFF1241	0.86	-0.8
1,269,304	-		GFF1241	0.87	-1.1
1,269,308	+		GFF1241	0.87	+1.1
1,269,308	+		GFF1241	0.87	-0.8
1,269,308	+		GFF1241	0.87	-0.4
1,269,321	-		GFF1241	0.88	-0.1
1,269,321	-		GFF1241	0.88	-1.4
1,269,328	-		GFF1241	0.89	+0.3
1,269,351	+				-0.3
1,269,351	+				+0.5
1,269,361	+				-0.5
1,269,391	+				-1.2
1,269,409	+				-0.4
1,269,417	-				+0.4
1,269,435	-				-2.0
1,269,436	+				+1.5
1,269,444	+				+0.6
1,269,449	+				+0.4
1,269,452	-				+1.2
1,269,457	-				-1.8
1,269,459	+				-0.5
1,269,459	+				+0.5
1,269,459	+				-1.1
1,269,459	+				-0.2
1,269,459	+				-1.7
1,269,459	+				-0.8
1,269,459	+				-0.9
1,269,459	+				-1.0
1,269,467	-				+1.2
1,269,467	-				-0.5
1,269,467	-				-1.1
1,269,467	-				+0.4
1,269,467	-				-0.2
1,269,467	-				-0.4
1,269,467	-				-1.1
1,269,471	-				-1.5
1,269,472	+				+0.4
1,269,482	+				-0.4
1,269,482	+				-1.2
1,269,482	+				+0.8
1,269,482	+				-0.4
1,269,482	+				-1.7
1,269,482	+				-0.4
1,269,482	+				-1.2
1,269,482	+				+0.0
1,269,482	+				-0.0
1,269,485	-				-0.4
1,269,490	-				-0.2
1,269,490	-				-0.8
1,269,490	-				-1.7
1,269,490	-				-0.4
1,269,490	-				+0.6
1,269,490	-				+0.4
1,269,521	+				+0.3
1,269,521	+				+1.2
1,269,547	+				+0.8
1,269,552	+				-2.0
1,269,555	-				-2.3
1,269,557	+				-0.4
1,269,557	+				-1.0
1,269,562	+				+0.4
1,269,565	-				-1.2
1,269,565	-				-0.9
1,269,565	-				-0.8
1,269,565	-				-0.5
1,269,567	+				-0.6
1,269,567	+				-0.4
1,269,567	+				-1.0
1,269,567	+				-0.8
1,269,570	-				-0.4
1,269,570	-				+0.4
1,269,570	-				+1.0
1,269,570	-				+0.1
1,269,575	-				-0.4
1,269,581	+				+0.4
1,269,625	-		GFF1242	0.11	+0.6
1,269,698	+		GFF1242	0.18	-0.7
1,269,698	+		GFF1242	0.18	-0.4
1,269,698	+		GFF1242	0.18	-0.2
1,269,698	+		GFF1242	0.18	-0.8
1,269,706	-		GFF1242	0.19	-1.1
1,269,706	-		GFF1242	0.19	-1.9
1,269,716	-		GFF1242	0.20	-0.0
1,269,718	+		GFF1242	0.20	-0.3
1,269,757	+		GFF1242	0.24	-2.1
1,269,759	+		GFF1242	0.24	+0.4
1,269,767	-		GFF1242	0.25	-0.4
1,269,789	+		GFF1242	0.28	-1.4
1,269,789	+		GFF1242	0.28	+1.4
1,269,789	+		GFF1242	0.28	-1.9
1,269,798	-		GFF1242	0.28	+0.9
1,269,801	+		GFF1242	0.29	-0.1
1,269,830	+		GFF1242	0.32	+0.6
1,269,850	+		GFF1242	0.34	-0.7
1,269,850	+		GFF1242	0.34	+0.7
1,269,850	+		GFF1242	0.34	-0.4
1,269,853	-		GFF1242	0.34	+0.3
1,269,855	+		GFF1242	0.34	-1.0
1,269,879	+		GFF1242	0.37	+0.6
1,269,887	-		GFF1242	0.38	-0.4
1,269,888	+		GFF1242	0.38	-1.5
1,269,912	-		GFF1242	0.40	+0.9
1,269,916	+		GFF1242	0.41	+0.8
1,269,959	+		GFF1242	0.45	-0.1
1,269,967	-		GFF1242	0.46	-0.1
1,269,982	+		GFF1242	0.47	+0.8
1,269,982	+		GFF1242	0.47	-0.6
1,269,987	+		GFF1242	0.48	-0.2
1,269,987	+		GFF1242	0.48	+0.2
1,269,987	+		GFF1242	0.48	-1.8
1,269,987	+		GFF1242	0.48	-3.4
1,269,990	-		GFF1242	0.48	+0.2
1,269,990	-		GFF1242	0.48	-1.1
1,269,990	-		GFF1242	0.48	-0.5
1,269,992	+		GFF1242	0.49	-0.4
1,269,992	+		GFF1242	0.49	-0.7
1,269,995	-		GFF1242	0.49	-1.0
1,269,999	+		GFF1242	0.49	-2.2
1,270,000	-		GFF1242	0.49	+0.8
1,270,000	-		GFF1242	0.49	-0.2
1,270,000	-		GFF1242	0.49	+0.9
1,270,007	-		GFF1242	0.50	-2.5
1,270,013	+		GFF1242	0.51	-0.2
1,270,073	+		GFF1242	0.57	-0.7
1,270,073	+		GFF1242	0.57	-1.2
1,270,081	-		GFF1242	0.58	+0.6
1,270,081	-		GFF1242	0.58	-1.0
1,270,087	+		GFF1242	0.58	-0.2
1,270,095	-		GFF1242	0.59	-0.5
1,270,109	-		GFF1242	0.61	+0.7
1,270,109	-		GFF1242	0.61	-0.1
1,270,109	-		GFF1242	0.61	-2.3
1,270,113	+		GFF1242	0.61	+0.3
1,270,125	+		GFF1242	0.62	+0.0
1,270,133	+		GFF1242	0.63	-0.8
1,270,141	-		GFF1242	0.64	-0.6
1,270,141	-		GFF1242	0.64	+1.8
1,270,165	-		GFF1242	0.66	-0.8
1,270,177	-		GFF1242	0.68	+1.0
1,270,181	+		GFF1242	0.68	-0.1
1,270,184	-		GFF1242	0.68	-0.1
1,270,184	-		GFF1242	0.68	-0.5
1,270,189	-		GFF1242	0.69	+0.3
1,270,210	-		GFF1242	0.71	-0.7
1,270,245	-		GFF1242	0.75	-1.0
1,270,245	-		GFF1242	0.75	+0.5
1,270,276	+		GFF1242	0.78	+0.3
1,270,276	+		GFF1242	0.78	-2.0
1,270,284	-		GFF1242	0.79	-1.6
1,270,284	-		GFF1242	0.79	+0.4
1,270,284	-		GFF1242	0.79	-0.0
1,270,284	-		GFF1242	0.79	-0.0
1,270,289	-		GFF1242	0.79	+0.2
1,270,292	-		GFF1242	0.79	+0.1
1,270,297	-		GFF1242	0.80	+0.1
1,270,338	-		GFF1242	0.84	+0.1
1,270,338	-		GFF1242	0.84	-1.4
1,270,374	+		GFF1242	0.88	-1.4
1,270,379	+		GFF1242	0.88	-0.3
1,270,384	+		GFF1242	0.89	-1.5
1,270,387	-		GFF1242	0.89	-0.1
1,270,389	+		GFF1242	0.89	+0.3
1,270,393	+		GFF1242	0.90	+0.3
1,270,394	+				+0.4
1,270,402	-				+0.8
1,270,406	+				-2.0
1,270,412	-				+0.2
1,270,429	+				-2.3
1,270,431	+				-1.6
1,270,437	-				+0.7
1,270,457	-				-0.2
1,270,457	-				+0.6
1,270,462	-				-0.9
1,270,532	-				+0.2
1,270,534	+				-1.5
1,270,542	+				+0.5
1,270,569	+				+1.1
1,270,595	-				-0.7
1,270,607	-				-1.4
1,270,609	+				+0.4
1,270,609	+				-0.0
1,270,609	+				+0.3
1,270,613	+				-0.0
1,270,615	-				+0.2
1,270,617	-				-0.7
1,270,622	-				+0.4
1,270,622	-				-0.1
1,270,622	-				-2.4
1,270,646	+				+0.4
1,270,651	+				-0.7
1,270,660	-				+0.5
1,270,662	+				+0.3
1,270,670	-				+0.6
1,270,685	-				+0.2
1,270,698	-				+0.5
1,270,716	+				-0.7
1,270,726	+				-1.0
1,270,730	-				+0.3
1,270,730	-				+0.2
1,270,734	-				+0.3
1,270,749	+				+0.2
1,270,749	+				+0.1
1,270,749	+				-0.4
1,270,749	+				-0.1
1,270,749	+				-0.7
1,270,749	-				-0.5
1,270,754	+				-0.6
1,270,754	+				+1.5
1,270,754	+				-0.1
1,270,754	+				-0.6
1,270,754	+				-0.3
1,270,754	+				-1.2
1,270,754	+				-1.7
1,270,754	+				-1.2
1,270,754	+				-0.2
1,270,754	+				-2.1
1,270,754	+				-1.2
1,270,754	+				-0.3
1,270,754	+				-1.4
1,270,754	+				+0.4
1,270,756	-				-0.1
1,270,757	-				-1.0
1,270,757	-				-2.0
1,270,757	-				+1.0
1,270,757	-				-1.2
1,270,757	-				+1.5
1,270,757	-				+1.4
1,270,762	-				-0.7
1,270,762	-				-0.6
1,270,762	-				-1.1
1,270,762	-				+1.3
1,270,762	-				-1.1
1,270,762	-				+0.8
1,270,762	-				+0.1
1,270,762	-				+0.0
1,270,762	-				-0.7
1,270,762	-				-0.1
1,270,762	-				+0.6
1,270,762	-				-1.6
1,270,763	+				-1.5
1,270,763	+				-1.4
1,270,771	-				-0.4
1,270,771	-				-0.2
1,270,787	-				-0.0
1,270,833	-		GFF1243	0.11	-0.1
1,270,839	-		GFF1243	0.12	-0.8
1,270,843	+		GFF1243	0.12	-1.8
1,270,850	+		GFF1243	0.12	-2.0
1,270,850	+		GFF1243	0.12	-0.2
1,270,851	-		GFF1243	0.12	+0.6
1,270,851	-		GFF1243	0.12	-0.4
1,270,851	-		GFF1243	0.12	-0.9
1,270,851	-		GFF1243	0.12	-0.9
1,270,851	-		GFF1243	0.12	-1.4
1,270,858	-		GFF1243	0.12	-1.5
1,270,858	-		GFF1243	0.12	-1.8
1,270,858	-		GFF1243	0.12	+0.0
1,270,858	-		GFF1243	0.12	-0.4
1,270,858	-		GFF1243	0.12	-1.4
1,270,858	-		GFF1243	0.12	+0.0
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1,270,858	-		GFF1243	0.12	-1.9
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