Strain Fitness in Sphingobium sp. HT1-2 around GFF1231

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,260,551	+				-0.1
1,260,569	-				-1.9
1,260,571	+				-2.4
1,260,620	+		GFF1230	0.11	-0.6
1,260,620	+		GFF1230	0.11	-0.8
1,260,620	+		GFF1230	0.11	-0.7
1,260,628	-		GFF1230	0.12	-0.9
1,260,654	+		GFF1230	0.14	+0.5
1,260,660	-		GFF1230	0.15	-0.0
1,260,660	-		GFF1230	0.15	-0.5
1,260,662	-		GFF1230	0.15	-2.0
1,260,669	+		GFF1230	0.16	-0.6
1,260,682	+		GFF1230	0.17	-0.0
1,260,682	-		GFF1230	0.17	-0.6
1,260,682	-		GFF1230	0.17	-1.1
1,260,718	+		GFF1230	0.20	-2.6
1,260,718	+		GFF1230	0.20	-0.8
1,260,719	+		GFF1230	0.20	-0.9
1,260,726	-		GFF1230	0.21	-0.8
1,260,727	+		GFF1230	0.21	-0.6
1,260,729	+		GFF1230	0.21	-0.5
1,260,729	+		GFF1230	0.21	-0.1
1,260,729	+		GFF1230	0.21	-0.5
1,260,735	-		GFF1230	0.22	-0.6
1,260,737	-		GFF1230	0.22	+0.2
1,260,737	-		GFF1230	0.22	-0.4
1,260,737	-		GFF1230	0.22	+0.9
1,260,750	+		GFF1230	0.23	+0.5
1,260,763	+		GFF1230	0.25	+0.1
1,260,763	+		GFF1230	0.25	+0.3
1,260,765	+		GFF1230	0.25	-0.8
1,260,765	+		GFF1230	0.25	-0.2
1,260,771	-		GFF1230	0.25	-1.6
1,260,771	-		GFF1230	0.25	-0.6
1,260,771	-		GFF1230	0.25	+0.3
1,260,771	-		GFF1230	0.25	-1.9
1,260,771	-		GFF1230	0.25	-0.9
1,260,773	-		GFF1230	0.26	-0.6
1,260,773	-		GFF1230	0.26	+0.3
1,260,776	+		GFF1230	0.26	-2.0
1,260,783	-		GFF1230	0.27	+0.5
1,260,793	+		GFF1230	0.28	-1.1
1,260,796	-		GFF1230	0.28	+0.7
1,260,819	+		GFF1230	0.30	-1.7
1,260,820	+		GFF1230	0.30	-1.4
1,260,834	-		GFF1230	0.32	-1.1
1,260,842	-		GFF1230	0.32	+0.2
1,260,870	+		GFF1230	0.35	+0.1
1,260,878	-		GFF1230	0.36	+0.8
1,260,888	+		GFF1230	0.37	+1.0
1,260,896	-		GFF1230	0.37	-0.4
1,260,896	-		GFF1230	0.37	+0.1
1,260,921	+		GFF1230	0.40	+0.4
1,260,921	+		GFF1230	0.40	-0.7
1,260,921	+		GFF1230	0.40	+0.1
1,260,929	-		GFF1230	0.41	+0.9
1,260,929	-		GFF1230	0.41	+0.2
1,260,929	-		GFF1230	0.41	-0.7
1,260,939	+		GFF1230	0.42	+0.0
1,260,940	+		GFF1230	0.42	-0.8
1,260,947	-		GFF1230	0.42	-2.3
1,260,947	-		GFF1230	0.42	-1.1
1,261,011	-		GFF1230	0.48	-0.2
1,261,011	-		GFF1230	0.48	-0.0
1,261,021	-		GFF1230	0.49	+0.5
1,261,026	+		GFF1230	0.50	+0.4
1,261,039	+		GFF1230	0.51	+1.2
1,261,051	+		GFF1230	0.52	-2.0
1,261,053	+		GFF1230	0.52	-0.4
1,261,059	+		GFF1230	0.53	-0.9
1,261,059	-		GFF1230	0.53	+0.7
1,261,064	+		GFF1230	0.54	-2.3
1,261,064	+		GFF1230	0.54	-0.4
1,261,064	+		GFF1230	0.54	-2.9
1,261,064	+		GFF1230	0.54	-1.2
1,261,064	+		GFF1230	0.54	-0.7
1,261,069	+		GFF1230	0.54	-1.3
1,261,072	-		GFF1230	0.54	-1.5
1,261,072	-		GFF1230	0.54	-2.4
1,261,072	-		GFF1230	0.54	-0.7
1,261,072	-		GFF1230	0.54	+0.4
1,261,072	-		GFF1230	0.54	+0.2
1,261,072	-		GFF1230	0.54	-1.4
1,261,072	-		GFF1230	0.54	+0.6
1,261,072	-		GFF1230	0.54	-0.8
1,261,072	-		GFF1230	0.54	-1.9
1,261,077	-		GFF1230	0.55	-0.1
1,261,077	-		GFF1230	0.55	-1.0
1,261,078	+		GFF1230	0.55	-0.9
1,261,083	+		GFF1230	0.55	-1.9
1,261,083	+		GFF1230	0.55	-1.0
1,261,083	+		GFF1230	0.55	-0.3
1,261,083	+		GFF1230	0.55	+0.2
1,261,083	+		GFF1230	0.55	-1.3
1,261,083	+		GFF1230	0.55	+0.3
1,261,083	+		GFF1230	0.55	-0.0
1,261,084	+		GFF1230	0.55	-0.4
1,261,091	-		GFF1230	0.56	+1.1
1,261,091	-		GFF1230	0.56	-0.9
1,261,091	-		GFF1230	0.56	-0.3
1,261,092	-		GFF1230	0.56	-0.0
1,261,092	-		GFF1230	0.56	+0.1
1,261,100	+		GFF1230	0.57	+1.4
1,261,100	+		GFF1230	0.57	-2.0
1,261,100	+		GFF1230	0.57	-0.3
1,261,100	+		GFF1230	0.57	-0.3
1,261,100	+		GFF1230	0.57	-0.1
1,261,100	+		GFF1230	0.57	-0.1
1,261,108	-		GFF1230	0.58	-0.9
1,261,108	-		GFF1230	0.58	-2.6
1,261,108	-		GFF1230	0.58	+0.2
1,261,108	-		GFF1230	0.58	-0.7
1,261,113	-		GFF1230	0.58	-0.3
1,261,113	-		GFF1230	0.58	-1.4
1,261,117	+		GFF1230	0.59	-0.3
1,261,119	+		GFF1230	0.59	+0.6
1,261,136	+		GFF1230	0.60	-1.4
1,261,144	-		GFF1230	0.61	-0.0
1,261,144	-		GFF1230	0.61	-2.3
1,261,188	+		GFF1230	0.65	-0.5
1,261,212	+		GFF1230	0.68	-0.3
1,261,227	+		GFF1230	0.69	-2.6
1,261,232	+		GFF1230	0.70	-0.5
1,261,235	-		GFF1230	0.70	-0.7
1,261,240	-		GFF1230	0.70	-0.2
1,261,242	+		GFF1230	0.71	+0.2
1,261,242	+		GFF1230	0.71	-1.1
1,261,242	+		GFF1230	0.71	-0.1
1,261,242	+		GFF1230	0.71	-0.5
1,261,242	+		GFF1230	0.71	-0.3
1,261,242	+		GFF1230	0.71	-0.6
1,261,242	+		GFF1230	0.71	-0.6
1,261,242	+		GFF1230	0.71	-2.4
1,261,242	+		GFF1230	0.71	-0.1
1,261,242	+		GFF1230	0.71	-2.0
1,261,245	-		GFF1230	0.71	+0.5
1,261,247	+		GFF1230	0.71	+0.6
1,261,248	+		GFF1230	0.71	-1.3
1,261,250	-		GFF1230	0.71	-1.0
1,261,250	-		GFF1230	0.71	+0.9
1,261,250	-		GFF1230	0.71	+0.5
1,261,250	-		GFF1230	0.71	+0.5
1,261,250	-		GFF1230	0.71	-1.3
1,261,250	-		GFF1230	0.71	+1.7
1,261,250	-		GFF1230	0.71	-0.1
1,261,261	+		GFF1230	0.72	-1.6
1,261,271	+		GFF1230	0.73	+0.6
1,261,274	-		GFF1230	0.74	-0.7
1,261,306	+		GFF1230	0.77	-1.0
1,261,330	+		GFF1230	0.79	+1.2
1,261,338	-		GFF1230	0.80	-1.5
1,261,364	-		GFF1230	0.82	-2.0
1,261,369	-		GFF1230	0.83	+0.4
1,261,369	-		GFF1230	0.83	+0.2
1,261,389	+		GFF1230	0.85	+0.2
1,261,397	+		GFF1230	0.85	-2.3
1,261,449	+				-0.6
1,261,449	+				-0.4
1,261,449	+				+0.1
1,261,450	+				-0.3
1,261,450	+				+0.1
1,261,456	+				+0.6
1,261,456	+				+0.1
1,261,457	-				-0.2
1,261,457	-				+0.3
1,261,457	-				+1.8
1,261,458	-				-0.6
1,261,458	-				-1.0
1,261,479	-				-0.7
1,261,483	-				+1.3
1,261,496	+				-0.3
1,261,496	+				-0.7
1,261,496	+				-0.4
1,261,496	+				+0.6
1,261,501	+				+0.6
1,261,502	+				-1.5
1,261,502	+				-0.7
1,261,504	-				+0.4
1,261,510	-				+0.3
1,261,510	-				-0.5
1,261,510	-				-0.6
1,261,513	+				-3.3
1,261,513	+				-1.0
1,261,533	+				-0.5
1,261,550	-				-0.4
1,261,550	-				-0.2
1,261,550	-				+0.1
1,261,552	+				-1.5
1,261,552	+				+0.2
1,261,557	+				-1.3
1,261,560	-				-0.2
1,261,560	-				+1.1
1,261,562	+				+0.6
1,261,562	+				+0.3
1,261,562	+				+1.4
1,261,565	-				-0.9
1,261,601	+				-0.5
1,261,606	+				-1.1
1,261,609	-				+0.3
1,261,619	-				+0.7
1,261,641	+				-2.2
1,261,641	+				-0.9
1,261,644	-				-0.6
1,261,667	-		GFF1231	0.10	+1.0
1,261,679	+		GFF1231	0.12	+0.2
1,261,720	+		GFF1231	0.15	-1.2
1,261,727	+		GFF1231	0.16	-0.2
1,261,727	+		GFF1231	0.16	-0.6
1,261,727	+		GFF1231	0.16	-1.0
1,261,727	+		GFF1231	0.16	-0.4
1,261,727	+		GFF1231	0.16	-1.5
1,261,727	+		GFF1231	0.16	-0.0
1,261,727	+		GFF1231	0.16	-1.2
1,261,727	+		GFF1231	0.16	-0.2
1,261,727	+		GFF1231	0.16	+1.6
1,261,727	+		GFF1231	0.16	-0.7
1,261,727	+		GFF1231	0.16	+0.9
1,261,735	-		GFF1231	0.16	-0.3
1,261,754	-		GFF1231	0.18	-0.6
1,261,759	-		GFF1231	0.19	-0.1
1,261,759	-		GFF1231	0.19	-1.0
1,261,759	-		GFF1231	0.19	-0.4
1,261,778	-		GFF1231	0.20	-1.0
1,261,778	-		GFF1231	0.20	-1.0
1,261,792	+		GFF1231	0.22	+1.1
1,261,792	+		GFF1231	0.22	+1.3
1,261,797	+		GFF1231	0.22	+0.1
1,261,800	-		GFF1231	0.22	+1.0
1,261,846	-		GFF1231	0.26	-2.1
1,261,846	-		GFF1231	0.26	+0.1
1,261,862	+		GFF1231	0.28	-0.4
1,261,893	+		GFF1231	0.30	-0.9
1,261,963	+		GFF1231	0.37	-0.6
1,261,977	+		GFF1231	0.38	-0.3
1,261,977	+		GFF1231	0.38	-2.2
1,261,986	+		GFF1231	0.39	-0.5
1,261,996	+		GFF1231	0.40	+0.8
1,262,013	+		GFF1231	0.41	-2.0
1,262,018	+		GFF1231	0.41	-0.8
1,262,018	+		GFF1231	0.41	-0.7
1,262,021	-		GFF1231	0.42	+0.8
1,262,035	+		GFF1231	0.43	+0.3
1,262,043	-		GFF1231	0.44	-1.0
1,262,043	-		GFF1231	0.44	+0.4
1,262,043	-		GFF1231	0.44	-0.7
1,262,060	+		GFF1231	0.45	-2.4
1,262,066	+		GFF1231	0.46	-1.4
1,262,079	-		GFF1231	0.47	-0.9
1,262,089	+		GFF1231	0.48	-1.9
1,262,089	+		GFF1231	0.48	-1.8
1,262,097	-		GFF1231	0.48	-0.1
1,262,097	-		GFF1231	0.48	-0.4
1,262,116	+		GFF1231	0.50	-1.4
1,262,124	-		GFF1231	0.51	+0.4
1,262,129	-		GFF1231	0.51	-1.8
1,262,145	+		GFF1231	0.53	-0.0
1,262,145	-		GFF1231	0.53	-0.8
1,262,147	-		GFF1231	0.53	+0.8
1,262,157	-		GFF1231	0.54	+0.6
1,262,160	+		GFF1231	0.54	+0.2
1,262,160	+		GFF1231	0.54	+0.8
1,262,160	+		GFF1231	0.54	-1.0
1,262,160	+		GFF1231	0.54	-0.7
1,262,163	-		GFF1231	0.54	+0.8
1,262,168	-		GFF1231	0.55	-0.8
1,262,168	-		GFF1231	0.55	-1.4
1,262,168	-		GFF1231	0.55	-0.5
1,262,172	-		GFF1231	0.55	-1.6
1,262,182	-		GFF1231	0.56	-0.5
1,262,187	+		GFF1231	0.56	-0.5
1,262,192	+		GFF1231	0.57	+0.6
1,262,192	+		GFF1231	0.57	-0.1
1,262,192	+		GFF1231	0.57	+0.7
1,262,227	-		GFF1231	0.60	-1.4
1,262,245	+		GFF1231	0.61	-0.3
1,262,250	+		GFF1231	0.62	-0.7
1,262,250	+		GFF1231	0.62	+0.7
1,262,250	+		GFF1231	0.62	-0.1
1,262,250	+		GFF1231	0.62	-0.4
1,262,250	+		GFF1231	0.62	-1.2
1,262,250	+		GFF1231	0.62	-0.1
1,262,255	+		GFF1231	0.62	+1.2
1,262,255	+		GFF1231	0.62	-0.5
1,262,258	-		GFF1231	0.63	+0.6
1,262,258	-		GFF1231	0.63	+0.3
1,262,258	-		GFF1231	0.63	-0.1
1,262,258	-		GFF1231	0.63	+0.6
1,262,258	-		GFF1231	0.63	-1.7
1,262,258	-		GFF1231	0.63	-2.0
1,262,259	+		GFF1231	0.63	-1.1
1,262,263	-		GFF1231	0.63	+1.3
1,262,263	-		GFF1231	0.63	+0.1
1,262,267	-		GFF1231	0.63	-0.5
1,262,287	+		GFF1231	0.65	-0.2
1,262,304	+		GFF1231	0.67	-0.3
1,262,307	-		GFF1231	0.67	+0.6
1,262,324	+		GFF1231	0.68	-0.9
1,262,324	+		GFF1231	0.68	+0.4
1,262,332	-		GFF1231	0.69	-0.7
1,262,344	+		GFF1231	0.70	-0.8
1,262,351	+		GFF1231	0.71	-0.2
1,262,352	-		GFF1231	0.71	-2.3
1,262,357	+		GFF1231	0.71	-1.6
1,262,369	+		GFF1231	0.72	+0.3
1,262,388	-		GFF1231	0.74	-1.5
1,262,388	-		GFF1231	0.74	-2.8
1,262,413	+		GFF1231	0.76	+0.2
1,262,413	+		GFF1231	0.76	+0.3
1,262,413	+		GFF1231	0.76	+0.3
1,262,418	+		GFF1231	0.77	+0.4
1,262,426	-		GFF1231	0.77	-2.7
1,262,426	-		GFF1231	0.77	+0.0
1,262,440	+		GFF1231	0.79	-0.5
1,262,440	+		GFF1231	0.79	-1.4
1,262,440	+		GFF1231	0.79	+0.8
1,262,440	+		GFF1231	0.79	-1.4
1,262,448	-		GFF1231	0.79	+0.7
1,262,448	-		GFF1231	0.79	-0.7
1,262,448	-		GFF1231	0.79	-0.5
1,262,475	+		GFF1231	0.82	-2.2
1,262,483	+		GFF1231	0.82	-0.6
1,262,488	+		GFF1231	0.83	+0.7
1,262,491	-		GFF1231	0.83	-0.1
1,262,491	-		GFF1231	0.83	+0.7
1,262,493	+		GFF1231	0.83	+0.5
1,262,493	+		GFF1231	0.83	-0.5
1,262,493	+		GFF1231	0.83	+0.1
1,262,493	+		GFF1231	0.83	+0.8
1,262,493	+		GFF1231	0.83	-1.6
1,262,493	+		GFF1231	0.83	-1.2
1,262,493	+		GFF1231	0.83	-1.4
1,262,493	+		GFF1231	0.83	+0.6
1,262,493	+		GFF1231	0.83	-1.2
1,262,493	+		GFF1231	0.83	-1.8
1,262,493	+		GFF1231	0.83	+0.6
1,262,493	+		GFF1231	0.83	-0.5
1,262,501	-		GFF1231	0.84	+0.3
1,262,501	-		GFF1231	0.84	-1.2
1,262,501	-		GFF1231	0.84	-0.4
1,262,501	-		GFF1231	0.84	-0.6
1,262,501	-		GFF1231	0.84	-1.2
1,262,501	-		GFF1231	0.84	-0.9
1,262,501	-		GFF1231	0.84	+0.2
1,262,501	-		GFF1231	0.84	-1.1
1,262,501	-		GFF1231	0.84	+0.6
1,262,501	-		GFF1231	0.84	-2.8
1,262,501	-		GFF1231	0.84	-0.7
1,262,501	-		GFF1231	0.84	-1.0
1,262,503	-		GFF1231	0.84	-0.2
1,262,511	+		GFF1231	0.85	-0.1
1,262,511	+		GFF1231	0.85	-1.5
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1,262,569	+				-2.5
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1,262,569	+				-0.8
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1,262,577	-				-0.8
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1,262,577	-				+1.2
1,262,577	-				-1.0
1,262,602	+				-2.0
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1,262,632	+				+0.4
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1,262,642	+				-1.7
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