Strain Fitness in Sphingobium sp. HT1-2 around GFF1173

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,176,818	+				+0.5
1,176,835	-				-0.2
1,176,836	-				-0.4
1,176,841	-				+0.4
1,176,872	-				-0.3
1,176,881	+				+1.2
1,176,910	-		GFF1172	0.10	-0.5
1,176,917	+		GFF1172	0.11	-0.9
1,176,939	+		GFF1172	0.13	-0.3
1,176,939	+		GFF1172	0.13	+1.8
1,176,939	+		GFF1172	0.13	+1.7
1,176,947	-		GFF1172	0.14	+0.5
1,176,947	-		GFF1172	0.14	-0.4
1,176,947	-		GFF1172	0.14	+0.8
1,176,947	-		GFF1172	0.14	-0.4
1,176,971	+		GFF1172	0.16	+0.2
1,176,971	+		GFF1172	0.16	-0.5
1,176,971	+		GFF1172	0.16	-1.9
1,176,971	+		GFF1172	0.16	-2.6
1,176,971	+		GFF1172	0.16	+0.1
1,176,971	+		GFF1172	0.16	-0.1
1,176,971	+		GFF1172	0.16	-0.0
1,176,971	+		GFF1172	0.16	+0.4
1,176,971	+		GFF1172	0.16	-1.5
1,176,971	+		GFF1172	0.16	-0.3
1,176,971	+		GFF1172	0.16	+0.4
1,176,971	+		GFF1172	0.16	+2.2
1,176,971	+		GFF1172	0.16	+0.1
1,176,979	-		GFF1172	0.17	+1.6
1,176,979	-		GFF1172	0.17	+0.3
1,176,979	-		GFF1172	0.17	-1.1
1,176,994	+		GFF1172	0.19	+0.4
1,177,013	+		GFF1172	0.20	-0.9
1,177,013	+		GFF1172	0.20	-2.2
1,177,013	+		GFF1172	0.20	-1.0
1,177,026	-		GFF1172	0.22	-2.3
1,177,041	-		GFF1172	0.23	-0.6
1,177,043	-		GFF1172	0.23	-0.5
1,177,078	+		GFF1172	0.27	+0.0
1,177,080	+		GFF1172	0.27	+0.3
1,177,090	+		GFF1172	0.28	-1.8
1,177,090	+		GFF1172	0.28	-0.4
1,177,096	-		GFF1172	0.29	+0.1
1,177,098	-		GFF1172	0.29	-2.1
1,177,098	-		GFF1172	0.29	-0.1
1,177,098	-		GFF1172	0.29	-0.5
1,177,098	-		GFF1172	0.29	-1.0
1,177,108	-		GFF1172	0.30	+0.1
1,177,123	+		GFF1172	0.31	+0.7
1,177,123	+		GFF1172	0.31	-0.2
1,177,125	-		GFF1172	0.31	-0.5
1,177,126	+		GFF1172	0.32	-0.7
1,177,131	-		GFF1172	0.32	-0.7
1,177,134	-		GFF1172	0.32	-1.0
1,177,134	-		GFF1172	0.32	-1.5
1,177,149	+		GFF1172	0.34	-0.4
1,177,149	+		GFF1172	0.34	-1.7
1,177,157	-		GFF1172	0.35	-0.2
1,177,210	-		GFF1172	0.40	-3.0
1,177,214	-		GFF1172	0.40	-0.4
1,177,235	+		GFF1172	0.42	-0.2
1,177,248	+		GFF1172	0.44	-0.1
1,177,253	+		GFF1172	0.44	+1.1
1,177,275	+		GFF1172	0.46	+0.4
1,177,278	-		GFF1172	0.47	-0.9
1,177,283	-		GFF1172	0.47	-1.7
1,177,299	+		GFF1172	0.49	-0.6
1,177,312	+		GFF1172	0.50	-0.0
1,177,320	-		GFF1172	0.51	-0.5
1,177,320	-		GFF1172	0.51	-0.3
1,177,339	+		GFF1172	0.53	-0.1
1,177,356	+		GFF1172	0.54	-0.7
1,177,357	-		GFF1172	0.54	-1.4
1,177,366	-		GFF1172	0.55	-0.6
1,177,392	-		GFF1172	0.58	-0.3
1,177,434	+		GFF1172	0.62	+0.0
1,177,434	+		GFF1172	0.62	-1.5
1,177,434	+		GFF1172	0.62	-0.6
1,177,439	+		GFF1172	0.62	+0.2
1,177,439	+		GFF1172	0.62	+0.4
1,177,439	+		GFF1172	0.62	-0.1
1,177,439	+		GFF1172	0.62	+0.3
1,177,439	+		GFF1172	0.62	-0.6
1,177,439	+		GFF1172	0.62	-0.3
1,177,442	-		GFF1172	0.63	-1.2
1,177,444	+		GFF1172	0.63	+0.1
1,177,444	+		GFF1172	0.63	+1.4
1,177,445	-		GFF1172	0.63	-0.7
1,177,447	-		GFF1172	0.63	+1.1
1,177,447	-		GFF1172	0.63	-1.2
1,177,447	-		GFF1172	0.63	-1.0
1,177,447	-		GFF1172	0.63	-0.2
1,177,452	-		GFF1172	0.64	-1.2
1,177,457	+		GFF1172	0.64	-1.7
1,177,461	+		GFF1172	0.65	-1.1
1,177,461	+		GFF1172	0.65	-0.1
1,177,467	+		GFF1172	0.65	+0.4
1,177,469	-		GFF1172	0.65	-0.1
1,177,469	-		GFF1172	0.65	-0.4
1,177,481	-		GFF1172	0.66	+0.1
1,177,484	+		GFF1172	0.67	+0.1
1,177,494	+		GFF1172	0.68	+0.2
1,177,510	+		GFF1172	0.69	-0.5
1,177,510	+		GFF1172	0.69	-0.8
1,177,518	-		GFF1172	0.70	-1.3
1,177,524	+		GFF1172	0.71	-0.7
1,177,582	+		GFF1172	0.76	+0.3
1,177,588	+		GFF1172	0.77	-0.2
1,177,590	-		GFF1172	0.77	-0.0
1,177,596	-		GFF1172	0.78	-0.4
1,177,620	-		GFF1172	0.80	+0.4
1,177,625	+		GFF1172	0.81	+0.9
1,177,628	+		GFF1172	0.81	-0.1
1,177,642	+		GFF1172	0.82	-0.9
1,177,643	-		GFF1172	0.82	-0.2
1,177,643	-		GFF1172	0.82	-0.3
1,177,643	-		GFF1172	0.82	-0.5
1,177,674	+		GFF1172	0.85	-1.4
1,177,674	+		GFF1172	0.85	+0.0
1,177,674	+		GFF1172	0.85	+1.1
1,177,674	+		GFF1172	0.85	-0.1
1,177,682	-		GFF1172	0.86	+1.8
1,177,682	-		GFF1172	0.86	-0.6
1,177,682	-		GFF1172	0.86	-0.7
1,177,682	-		GFF1172	0.86	-2.0
1,177,682	-		GFF1172	0.86	+0.5
1,177,682	-		GFF1172	0.86	+0.6
1,177,682	-		GFF1172	0.86	-0.5
1,177,682	-		GFF1172	0.86	-0.2
1,177,682	-		GFF1172	0.86	-0.0
1,177,682	-		GFF1172	0.86	-0.4
1,177,682	-		GFF1172	0.86	-0.1
1,177,704	+		GFF1172	0.88	+0.8
1,177,719	-		GFF1172	0.90	+0.3
1,177,721	-				+0.5
1,177,732	+				-0.1
1,177,733	+				-1.6
1,177,737	+				+0.5
1,177,741	-				-1.8
1,177,756	+				+1.2
1,177,756	+				+0.3
1,177,756	+				-1.3
1,177,756	+				+0.1
1,177,756	+				+0.4
1,177,756	+				-0.1
1,177,756	+				+1.3
1,177,756	+				-0.7
1,177,756	+				+0.5
1,177,756	+				-0.9
1,177,756	+				-0.6
1,177,756	+				-0.9
1,177,757	+				-1.4
1,177,762	-				+0.8
1,177,764	-				-1.5
1,177,764	-				-3.1
1,177,764	-				-0.2
1,177,764	-				-0.4
1,177,764	-				-0.8
1,177,764	-				+0.1
1,177,764	-				-2.7
1,177,764	-				-0.1
1,177,764	-				+0.9
1,177,764	-				-0.6
1,177,764	-				-1.0
1,177,764	-				-0.7
1,177,775	+				+0.2
1,177,807	+				+0.1
1,177,828	+				-1.7
1,177,828	+				-0.3
1,177,836	+				-0.3
1,177,836	-				-0.9
1,177,853	+				-0.9
1,177,861	+				-0.5
1,177,861	+				-1.9
1,177,861	+				+0.3
1,177,861	+				+1.8
1,177,861	+				-1.1
1,177,861	+				+0.1
1,177,861	-				-0.2
1,177,863	+		GFF1173	0.10	+0.1
1,177,863	+		GFF1173	0.10	-0.6
1,177,863	+		GFF1173	0.10	-1.0
1,177,863	-		GFF1173	0.10	+0.5
1,177,869	-		GFF1173	0.12	+0.1
1,177,871	-		GFF1173	0.12	-0.0
1,177,871	-		GFF1173	0.12	-0.7
1,177,877	+		GFF1173	0.13	+0.1
1,177,885	-		GFF1173	0.15	+0.9
1,177,912	+		GFF1173	0.21	+0.6
1,177,912	+		GFF1173	0.21	-1.8
1,177,912	+		GFF1173	0.21	+0.3
1,177,917	+		GFF1173	0.23	-2.4
1,177,917	+		GFF1173	0.23	-0.1
1,177,917	+		GFF1173	0.23	-0.1
1,177,917	+		GFF1173	0.23	+1.3
1,177,917	+		GFF1173	0.23	+0.5
1,177,917	+		GFF1173	0.23	-0.2
1,177,917	+		GFF1173	0.23	-1.4
1,177,920	-		GFF1173	0.23	-0.2
1,177,920	-		GFF1173	0.23	-1.0
1,177,920	-		GFF1173	0.23	-1.9
1,177,925	-		GFF1173	0.24	+0.0
1,177,925	-		GFF1173	0.24	-1.2
1,177,926	-		GFF1173	0.25	-0.5
1,177,944	-		GFF1173	0.29	-0.7
1,177,953	-		GFF1173	0.31	-1.1
1,177,961	+		GFF1173	0.33	+0.0
1,178,000	+		GFF1173	0.42	-0.6
1,178,000	+		GFF1173	0.42	-0.4
1,178,004	+		GFF1173	0.42	-0.2
1,178,008	-		GFF1173	0.43	-0.3
1,178,011	+		GFF1173	0.44	-0.3
1,178,031	+		GFF1173	0.49	+0.1
1,178,055	+		GFF1173	0.54	-0.9
1,178,055	+		GFF1173	0.54	-0.2
1,178,055	+		GFF1173	0.54	+0.2
1,178,055	+		GFF1173	0.54	-0.5
1,178,055	+		GFF1173	0.54	-0.3
1,178,063	-		GFF1173	0.56	-0.2
1,178,063	-		GFF1173	0.56	-0.7
1,178,063	-		GFF1173	0.56	-0.6
1,178,063	-		GFF1173	0.56	-1.9
1,178,086	-		GFF1173	0.61	+0.9
1,178,117	-		GFF1173	0.68	-1.3
1,178,120	+		GFF1173	0.69	+0.5
1,178,120	+		GFF1173	0.69	+0.0
1,178,120	+		GFF1173	0.69	-0.6
1,178,122	-		GFF1173	0.69	+0.5
1,178,151	+		GFF1173	0.76	-1.1
1,178,151	+		GFF1173	0.76	+0.4
1,178,159	-		GFF1173	0.78	+0.6
1,178,184	+		GFF1173	0.84	-0.5
1,178,184	+		GFF1173	0.84	+0.3
1,178,244	-				-0.3
1,178,259	+				-0.7
1,178,259	+				-0.5
1,178,259	+				-2.0
1,178,269	+				-1.3
1,178,277	-				-0.3
1,178,277	-				-0.0
1,178,277	-				-0.5
1,178,294	+		GFF1174	0.11	-0.2
1,178,295	+		GFF1174	0.12	+0.3
1,178,297	-		GFF1174	0.12	-0.9
1,178,297	-		GFF1174	0.12	-0.4
1,178,303	-		GFF1174	0.14	+0.3
1,178,310	+		GFF1174	0.16	+0.0
1,178,323	-		GFF1174	0.19	-0.1
1,178,339	+		GFF1174	0.24	+1.3
1,178,370	-		GFF1174	0.32	+0.6
1,178,380	-		GFF1174	0.35	-0.2
1,178,407	-		GFF1174	0.42	+0.1
1,178,427	-		GFF1174	0.48	-2.1
1,178,428	+		GFF1174	0.48	-1.3
1,178,428	+		GFF1174	0.48	+1.5
1,178,443	+		GFF1174	0.52	-2.5
1,178,463	+		GFF1174	0.58	-1.7
1,178,479	-		GFF1174	0.62	-0.9
1,178,479	-		GFF1174	0.62	+0.9
1,178,492	+		GFF1174	0.66	-2.1
1,178,492	+		GFF1174	0.66	-0.1
1,178,492	+		GFF1174	0.66	-2.5
1,178,492	+		GFF1174	0.66	-0.1
1,178,497	+		GFF1174	0.67	-0.1
1,178,497	+		GFF1174	0.67	-0.2
1,178,500	-		GFF1174	0.68	-1.3
1,178,500	-		GFF1174	0.68	+0.8
1,178,504	+		GFF1174	0.69	-0.5
1,178,504	+		GFF1174	0.69	-1.6
1,178,505	-		GFF1174	0.69	+0.3
1,178,505	-		GFF1174	0.69	-1.5
1,178,505	-		GFF1174	0.69	-1.6
1,178,505	-		GFF1174	0.69	-1.4
1,178,509	+		GFF1174	0.70	-1.0
1,178,512	-		GFF1174	0.71	+0.1
1,178,512	-		GFF1174	0.71	-0.3
1,178,512	-		GFF1174	0.71	-1.3
1,178,512	-		GFF1174	0.71	-0.5
1,178,512	-		GFF1174	0.71	+0.7
1,178,512	-		GFF1174	0.71	-1.7
1,178,512	-		GFF1174	0.71	+0.2
1,178,522	-		GFF1174	0.74	-0.6
1,178,522	-		GFF1174	0.74	-0.9
1,178,532	-		GFF1174	0.77	-0.6
1,178,535	+		GFF1174	0.77	-2.0
1,178,573	+		GFF1174	0.88	-1.1
1,178,580	+		GFF1174	0.90	+0.4
1,178,583	-				-1.5
1,178,588	-				-0.2
1,178,590	+				+0.3
1,178,593	-				-1.4
1,178,601	+				+1.6
1,178,607	-				+1.3
1,178,616	+				-0.1
1,178,653	+				-0.9
1,178,653	+				-0.4
1,178,653	+				+0.6
1,178,661	-				+0.2
1,178,684	-				+0.3
1,178,684	-				+0.9
1,178,684	-				+0.8
1,178,684	-				+0.8
1,178,684	-				-0.0
1,178,684	-				-1.7
1,178,684	-				-2.4
1,178,689	+				+1.1
1,178,694	+				-1.0
1,178,697	-				+0.1
1,178,701	-				+1.3
1,178,713	+				+1.1
1,178,713	+				-0.2
1,178,742	+				+0.2
1,178,742	+				-0.6
1,178,757	+				+1.5
1,178,761	-				+0.0
1,178,764	-				-2.0
1,178,765	-				-1.1
1,178,778	+				+0.2
1,178,778	+				+0.9
1,178,778	+				+0.5
1,178,778	+				+0.4
1,178,782	-				-0.5
1,178,786	-				-0.4
1,178,809	+				+0.4
1,178,847	+				+0.4
1,178,847	+				+0.1
1,178,855	-				+0.2
1,178,855	-				-1.4
1,178,900	-				-2.5
1,178,930	+				-2.3
1,178,930	+				-0.4
1,178,938	+				+0.2
1,178,940	-				-0.2
1,178,951	+				+0.9
1,178,954	-				+0.4
1,178,960	+				-0.7
1,178,960	+				+0.1
1,178,972	+				+0.8
1,178,980	-				-0.8
1,179,006	+		GFF1175	0.16	+0.3
1,179,010	+		GFF1175	0.19	-0.6
1,179,010	-		GFF1175	0.19	-0.7
1,179,012	+		GFF1175	0.20	-0.5
1,179,013	-		GFF1175	0.21	-1.4
1,179,018	-		GFF1175	0.24	-0.9
1,179,018	-		GFF1175	0.24	-0.3
1,179,018	-		GFF1175	0.24	-0.4
1,179,018	-		GFF1175	0.24	-1.4
1,179,020	-		GFF1175	0.25	+2.0
1,179,052	+		GFF1175	0.45	-1.3
1,179,057	+		GFF1175	0.48	+0.6
1,179,060	-		GFF1175	0.50	-2.1
1,179,062	+		GFF1175	0.52	+0.3
1,179,062	+		GFF1175	0.52	-0.0
1,179,062	+		GFF1175	0.52	-0.7
1,179,062	+		GFF1175	0.52	+0.0
1,179,062	+		GFF1175	0.52	-0.7
1,179,062	+		GFF1175	0.52	+0.8
1,179,062	+		GFF1175	0.52	-0.0
1,179,062	+		GFF1175	0.52	+0.7
1,179,062	+		GFF1175	0.52	+0.7
1,179,062	+		GFF1175	0.52	-0.7
1,179,065	-		GFF1175	0.53	-2.3
1,179,065	-		GFF1175	0.53	-0.4
1,179,069	+		GFF1175	0.56	-2.4
1,179,070	-		GFF1175	0.57	+0.5
1,179,070	-		GFF1175	0.57	+0.4
1,179,070	-		GFF1175	0.57	+0.9
1,179,070	-		GFF1175	0.57	-0.8
1,179,070	-		GFF1175	0.57	+0.1
1,179,070	-		GFF1175	0.57	-1.4
1,179,070	-		GFF1175	0.57	-1.4
1,179,070	-		GFF1175	0.57	-0.1
1,179,101	+		GFF1175	0.76	-0.3
1,179,101	+		GFF1175	0.76	-0.7
1,179,109	-		GFF1175	0.81	-1.0
1,179,113	+		GFF1175	0.84	-0.3
1,179,119	-		GFF1175	0.87	-1.1
1,179,120	+		GFF1175	0.88	+0.1
1,179,124	-				+0.4
1,179,133	-				-0.1
1,179,133	-				-0.7
1,179,149	+				-0.8
1,179,156	-				+0.6
1,179,170	+				+0.6
1,179,172	+				-0.3
1,179,173	+				-0.0
1,179,173	+				+0.5
1,179,191	-				-0.8
1,179,200	+				-0.5
1,179,208	+				-0.6
1,179,208	-				+1.5
1,179,215	-				-0.8
1,179,236	-				-2.5