Strain Fitness in Sphingobium sp. HT1-2 around GFF1078

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,084,425	-		GFF1076	0.71	-0.2
1,084,425	-		GFF1076	0.71	+1.0
1,084,429	+		GFF1076	0.72	-1.2
1,084,451	+		GFF1076	0.73	+0.1
1,084,457	-		GFF1076	0.73	-1.2
1,084,459	-		GFF1076	0.73	-0.4
1,084,466	+		GFF1076	0.74	-2.2
1,084,474	+		GFF1076	0.74	+0.0
1,084,474	-		GFF1076	0.74	+0.7
1,084,480	+		GFF1076	0.74	+1.6
1,084,480	+		GFF1076	0.74	-1.5
1,084,482	-		GFF1076	0.75	-0.7
1,084,485	+		GFF1076	0.75	+0.7
1,084,512	-		GFF1076	0.76	-0.4
1,084,512	-		GFF1076	0.76	-0.6
1,084,533	+		GFF1076	0.77	+0.4
1,084,541	-		GFF1076	0.78	-0.5
1,084,586	-		GFF1076	0.80	-1.7
1,084,586	-		GFF1076	0.80	-0.0
1,084,616	+		GFF1076	0.82	-0.6
1,084,622	+		GFF1076	0.82	-0.3
1,084,622	+		GFF1076	0.82	-1.2
1,084,630	-		GFF1076	0.83	+1.5
1,084,630	-		GFF1076	0.83	-0.3
1,084,630	-		GFF1076	0.83	+1.0
1,084,630	-		GFF1076	0.83	-0.6
1,084,630	-		GFF1076	0.83	-0.5
1,084,630	-		GFF1076	0.83	+0.0
1,084,635	-		GFF1076	0.83	+1.1
1,084,644	+		GFF1076	0.84	-0.2
1,084,644	+		GFF1076	0.84	-0.7
1,084,726	+		GFF1076	0.88	-0.8
1,084,739	-		GFF1076	0.89	+0.0
1,084,741	+		GFF1076	0.89	-0.7
1,084,761	+				+0.6
1,084,772	+				+0.2
1,084,777	+				-0.9
1,084,780	-				-0.7
1,084,780	-				+1.3
1,084,780	-				-1.2
1,084,787	+				-0.1
1,084,810	+				-0.4
1,084,818	-				+0.9
1,084,909	+				+0.2
1,084,920	+				-1.3
1,084,922	+				+0.1
1,084,922	+				-0.0
1,084,922	+				-0.7
1,084,922	+				+0.3
1,084,922	-				-1.1
1,084,928	-				-0.2
1,084,928	-				+0.0
1,084,928	-				+0.8
1,084,929	+				+0.8
1,084,929	+				+0.8
1,084,929	+				-0.5
1,084,929	+				-1.7
1,084,929	+				-1.0
1,084,929	+				+0.0
1,084,929	+				-0.5
1,084,929	+				-2.3
1,084,929	+				+0.7
1,084,929	+				-1.7
1,084,929	+				+0.5
1,084,929	+				-1.1
1,084,929	+				+0.3
1,084,937	-				+1.1
1,084,937	-				-2.3
1,084,937	-				+0.1
1,084,937	-				-0.5
1,084,937	-				+0.1
1,084,937	-				-1.3
1,084,937	-				+0.7
1,084,937	-				+0.9
1,084,937	-				-1.1
1,084,937	-				-1.7
1,084,937	-				+0.2
1,084,937	-				-2.3
1,084,937	-				-1.0
1,084,937	-				-0.8
1,084,937	-				-2.3
1,084,937	-				+0.2
1,084,937	-				-0.5
1,084,937	-				+0.7
1,084,937	-				-0.7
1,084,948	+				-2.5
1,084,948	+				-0.6
1,084,956	-				+1.8
1,085,025	-		GFF1077	0.18	+0.2
1,085,025	-		GFF1077	0.18	-0.5
1,085,030	-		GFF1077	0.20	-0.3
1,085,032	+		GFF1077	0.20	+1.0
1,085,040	-		GFF1077	0.22	-0.5
1,085,047	-		GFF1077	0.24	+1.2
1,085,047	-		GFF1077	0.24	-1.0
1,085,090	+		GFF1077	0.35	+0.5
1,085,095	+		GFF1077	0.36	-1.6
1,085,095	+		GFF1077	0.36	-0.3
1,085,095	+		GFF1077	0.36	-0.2
1,085,129	-		GFF1077	0.44	+0.5
1,085,129	-		GFF1077	0.44	-0.0
1,085,145	+		GFF1077	0.48	-0.1
1,085,147	-		GFF1077	0.49	+0.3
1,085,150	+		GFF1077	0.50	-1.4
1,085,150	+		GFF1077	0.50	-0.3
1,085,150	+		GFF1077	0.50	-0.4
1,085,150	+		GFF1077	0.50	-0.1
1,085,153	+		GFF1077	0.50	-0.1
1,085,153	+		GFF1077	0.50	-1.3
1,085,153	+		GFF1077	0.50	+0.0
1,085,153	+		GFF1077	0.50	-0.3
1,085,153	+		GFF1077	0.50	+0.3
1,085,153	+		GFF1077	0.50	-1.6
1,085,153	+		GFF1077	0.50	-0.4
1,085,153	+		GFF1077	0.50	-0.6
1,085,153	+		GFF1077	0.50	-0.2
1,085,153	+		GFF1077	0.50	+1.0
1,085,153	+		GFF1077	0.50	+0.2
1,085,153	+		GFF1077	0.50	-0.4
1,085,153	-		GFF1077	0.50	+1.7
1,085,155	+		GFF1077	0.51	+0.3
1,085,155	+		GFF1077	0.51	-0.8
1,085,155	+		GFF1077	0.51	+0.6
1,085,158	-		GFF1077	0.51	-2.4
1,085,158	-		GFF1077	0.51	-1.1
1,085,158	-		GFF1077	0.51	-0.5
1,085,158	-		GFF1077	0.51	-0.7
1,085,158	-		GFF1077	0.51	-2.0
1,085,158	-		GFF1077	0.51	-1.5
1,085,158	-		GFF1077	0.51	-1.5
1,085,161	-		GFF1077	0.52	+0.3
1,085,161	-		GFF1077	0.52	-1.3
1,085,161	-		GFF1077	0.52	+0.3
1,085,161	-		GFF1077	0.52	-0.7
1,085,163	-		GFF1077	0.53	+0.9
1,085,163	-		GFF1077	0.53	+0.4
1,085,171	+		GFF1077	0.55	-0.3
1,085,199	-		GFF1077	0.62	+1.2
1,085,220	+		GFF1077	0.67	+0.3
1,085,223	-		GFF1077	0.68	+0.2
1,085,223	-		GFF1077	0.68	-1.5
1,085,223	-		GFF1077	0.68	+0.8
1,085,228	+		GFF1077	0.69	-0.6
1,085,232	+		GFF1077	0.70	+0.8
1,085,236	-		GFF1077	0.71	-1.6
1,085,240	-		GFF1077	0.72	-0.5
1,085,240	-		GFF1077	0.72	-1.3
1,085,250	-		GFF1077	0.74	+0.1
1,085,258	+		GFF1077	0.76	+0.5
1,085,292	+		GFF1077	0.85	-0.0
1,085,300	+		GFF1077	0.87	-1.6
1,085,300	-		GFF1077	0.87	-0.7
1,085,306	+		GFF1077	0.88	+1.9
1,085,328	+				+0.6
1,085,328	+				-1.3
1,085,334	+				+0.1
1,085,336	-				+0.2
1,085,360	+				-0.9
1,085,407	+				-0.1
1,085,415	-				+0.1
1,085,456	+				-1.4
1,085,469	-				-2.3
1,085,478	+				-0.3
1,085,491	+				+1.3
1,085,512	+		GFF1078	0.13	-1.3
1,085,520	-		GFF1078	0.14	+0.9
1,085,520	-		GFF1078	0.14	+0.7
1,085,522	-		GFF1078	0.14	-0.8
1,085,563	+		GFF1078	0.20	-0.4
1,085,568	+		GFF1078	0.20	-0.2
1,085,568	+		GFF1078	0.20	+0.7
1,085,568	+		GFF1078	0.20	-0.6
1,085,568	+		GFF1078	0.20	+1.8
1,085,576	-		GFF1078	0.21	+0.3
1,085,576	-		GFF1078	0.21	+0.7
1,085,576	-		GFF1078	0.21	+0.3
1,085,576	-		GFF1078	0.21	-0.1
1,085,589	-		GFF1078	0.23	-0.7
1,085,589	-		GFF1078	0.23	-2.2
1,085,589	-		GFF1078	0.23	-1.3
1,085,589	-		GFF1078	0.23	+1.1
1,085,591	+		GFF1078	0.24	-0.6
1,085,599	-		GFF1078	0.25	-1.3
1,085,611	-		GFF1078	0.26	-0.3
1,085,627	-		GFF1078	0.28	+0.2
1,085,628	+		GFF1078	0.29	-1.0
1,085,628	+		GFF1078	0.29	-0.4
1,085,628	+		GFF1078	0.29	-1.3
1,085,630	+		GFF1078	0.29	+0.5
1,085,636	-		GFF1078	0.30	-1.4
1,085,643	+		GFF1078	0.31	+0.4
1,085,669	+		GFF1078	0.34	+0.5
1,085,677	+		GFF1078	0.35	+0.2
1,085,685	-		GFF1078	0.37	-0.4
1,085,694	+		GFF1078	0.38	-0.4
1,085,694	+		GFF1078	0.38	-1.0
1,085,694	+		GFF1078	0.38	-0.0
1,085,694	+		GFF1078	0.38	-2.0
1,085,694	+		GFF1078	0.38	-0.3
1,085,694	+		GFF1078	0.38	-0.8
1,085,694	+		GFF1078	0.38	+0.5
1,085,694	+		GFF1078	0.38	+0.5
1,085,694	+		GFF1078	0.38	+0.2
1,085,694	+		GFF1078	0.38	+0.7
1,085,694	+		GFF1078	0.38	+0.6
1,085,702	-		GFF1078	0.39	-1.4
1,085,702	-		GFF1078	0.39	-2.0
1,085,702	-		GFF1078	0.39	-2.4
1,085,702	-		GFF1078	0.39	-0.3
1,085,702	-		GFF1078	0.39	-0.3
1,085,702	-		GFF1078	0.39	+0.3
1,085,702	-		GFF1078	0.39	-0.7
1,085,702	-		GFF1078	0.39	-0.1
1,085,702	-		GFF1078	0.39	-1.6
1,085,702	-		GFF1078	0.39	-0.1
1,085,702	-		GFF1078	0.39	-0.2
1,085,702	-		GFF1078	0.39	+0.5
1,085,702	-		GFF1078	0.39	-2.3
1,085,702	-		GFF1078	0.39	+1.0
1,085,710	+		GFF1078	0.40	-0.3
1,085,710	+		GFF1078	0.40	-0.1
1,085,718	-		GFF1078	0.41	+0.5
1,085,718	-		GFF1078	0.41	-0.9
1,085,732	-		GFF1078	0.43	+0.4
1,085,738	-		GFF1078	0.44	+0.7
1,085,745	+		GFF1078	0.45	+1.0
1,085,753	-		GFF1078	0.46	+0.5
1,085,788	-		GFF1078	0.51	+0.0
1,085,788	-		GFF1078	0.51	+1.0
1,085,818	+		GFF1078	0.55	+0.2
1,085,829	+		GFF1078	0.56	-1.2
1,085,837	-		GFF1078	0.58	+0.5
1,085,853	-		GFF1078	0.60	-0.1
1,085,856	+		GFF1078	0.60	-1.6
1,085,870	+		GFF1078	0.62	-0.3
1,085,882	-		GFF1078	0.64	+0.7
1,085,884	-		GFF1078	0.64	-0.2
1,085,925	-		GFF1078	0.70	-1.4
1,085,946	-		GFF1078	0.73	-0.6
1,085,964	-		GFF1078	0.75	-0.0
1,085,975	+		GFF1078	0.77	-0.1
1,085,983	-		GFF1078	0.78	-0.4
1,085,985	+		GFF1078	0.78	+0.6
1,085,986	+		GFF1078	0.78	+0.4
1,085,994	-		GFF1078	0.79	-0.6
1,085,994	-		GFF1078	0.79	-1.4
1,086,004	-		GFF1078	0.81	-0.1
1,086,012	-		GFF1078	0.82	-0.3
1,086,022	+		GFF1078	0.83	+0.3
1,086,078	+				+0.7
1,086,083	+				+0.7
1,086,124	-				+0.7
1,086,169	-				-0.3
1,086,181	+				+1.4
1,086,181	+				-1.5
1,086,181	+				+1.2
1,086,189	-				+0.6
1,086,189	-				-1.8
1,086,189	-				+0.7
1,086,189	-				-1.0
1,086,206	+		GFF1079	0.13	+0.5
1,086,206	+		GFF1079	0.13	-0.1
1,086,206	+		GFF1079	0.13	-1.4
1,086,206	+		GFF1079	0.13	-1.4
1,086,244	+		GFF1079	0.22	-0.6
1,086,244	+		GFF1079	0.22	-0.4
1,086,247	-		GFF1079	0.23	+0.0
1,086,252	-		GFF1079	0.24	+0.2
1,086,252	-		GFF1079	0.24	-0.2
1,086,253	+		GFF1079	0.24	-0.6
1,086,259	+		GFF1079	0.26	-2.1
1,086,260	-		GFF1079	0.26	+0.6
1,086,266	-		GFF1079	0.27	-0.6
1,086,293	+		GFF1079	0.33	-0.6
1,086,304	-		GFF1079	0.36	+0.0
1,086,318	+		GFF1079	0.39	-0.7
1,086,373	-		GFF1079	0.52	-0.1
1,086,376	-		GFF1079	0.52	+0.0
1,086,394	-		GFF1079	0.57	-1.5
1,086,409	-		GFF1079	0.60	-0.2
1,086,413	-		GFF1079	0.61	-0.8
1,086,423	-		GFF1079	0.63	+0.7
1,086,424	-		GFF1079	0.63	+0.4
1,086,424	-		GFF1079	0.63	-0.1
1,086,424	-		GFF1079	0.63	+1.7
1,086,452	+		GFF1079	0.70	-0.3
1,086,452	+		GFF1079	0.70	-2.4
1,086,460	-		GFF1079	0.72	-0.2
1,086,460	-		GFF1079	0.72	+0.3
1,086,460	-		GFF1079	0.72	-1.4
1,086,470	-		GFF1079	0.74	+0.8
1,086,470	-		GFF1079	0.74	-0.2
1,086,491	+		GFF1079	0.79	-1.3
1,086,499	-		GFF1079	0.81	+1.0
1,086,499	-		GFF1079	0.81	-1.5
1,086,501	+		GFF1079	0.81	+0.7
1,086,501	+		GFF1079	0.81	+1.2
1,086,501	+		GFF1079	0.81	+0.1
1,086,501	+		GFF1079	0.81	-0.1
1,086,501	+		GFF1079	0.81	+1.0
1,086,501	+		GFF1079	0.81	+0.7
1,086,501	+		GFF1079	0.81	+0.7
1,086,501	+		GFF1079	0.81	+0.4
1,086,501	+		GFF1079	0.81	+0.1
1,086,501	+		GFF1079	0.81	-0.8
1,086,501	+		GFF1079	0.81	+0.3
1,086,501	+		GFF1079	0.81	+1.0
1,086,501	+		GFF1079	0.81	-0.7
1,086,501	+		GFF1079	0.81	-0.9
1,086,505	-		GFF1079	0.82	-1.4
1,086,509	-		GFF1079	0.83	-1.6
1,086,509	-		GFF1079	0.83	-0.1
1,086,509	-		GFF1079	0.83	+0.1
1,086,509	-		GFF1079	0.83	+0.0
1,086,509	-		GFF1079	0.83	-0.2
1,086,509	-		GFF1079	0.83	+0.7
1,086,509	-		GFF1079	0.83	+0.8
1,086,509	-		GFF1079	0.83	+1.0
1,086,509	-		GFF1079	0.83	-0.2
1,086,509	-		GFF1079	0.83	+0.8
1,086,509	-		GFF1079	0.83	+0.4
1,086,509	-		GFF1079	0.83	+0.9
1,086,509	-		GFF1079	0.83	+0.1
1,086,509	-		GFF1079	0.83	+1.0
1,086,533	+		GFF1079	0.89	-0.3
1,086,538	+		GFF1079	0.90	+0.1
1,086,541	-				-1.6
1,086,565	+				-1.2
1,086,614	+				-1.4
1,086,644	+				-1.4
1,086,644	+				-0.1
1,086,644	+				+0.4
1,086,652	-				-0.8
1,086,654	+				-1.4
1,086,658	-				-0.1
1,086,722	-				-0.0
1,086,723	+				+0.4
1,086,737	+				+1.1
1,086,738	-				-0.7
1,086,743	-				-1.6
1,086,756	-		GFF1080	0.10	-0.9
1,086,766	-		GFF1080	0.11	-0.2
1,086,770	+		GFF1080	0.12	+1.4
1,086,770	+		GFF1080	0.12	+0.9
1,086,778	-		GFF1080	0.13	-1.1
1,086,793	+		GFF1080	0.15	-0.2
1,086,808	+		GFF1080	0.17	-1.7
1,086,814	+		GFF1080	0.18	-2.2
1,086,814	+		GFF1080	0.18	+1.4
1,086,814	+		GFF1080	0.18	+0.4
1,086,814	-		GFF1080	0.18	-0.7
1,086,816	+		GFF1080	0.19	+0.3
1,086,822	-		GFF1080	0.19	-0.1
1,086,822	-		GFF1080	0.19	-0.4
1,086,822	-		GFF1080	0.19	-1.2
1,086,822	-		GFF1080	0.19	-1.8
1,086,822	-		GFF1080	0.19	+0.7
1,086,823	-		GFF1080	0.19	+0.0
1,086,825	+		GFF1080	0.20	+0.9
1,086,829	-		GFF1080	0.20	-1.4
1,086,834	+		GFF1080	0.21	+0.9
1,086,834	+		GFF1080	0.21	-2.2
1,086,857	-		GFF1080	0.24	+0.8
1,086,857	-		GFF1080	0.24	+0.6
1,086,877	-		GFF1080	0.27	+1.1
1,086,884	+		GFF1080	0.28	-0.0
1,086,884	+		GFF1080	0.28	-0.4
1,086,884	+		GFF1080	0.28	-1.8
1,086,884	+		GFF1080	0.28	+0.4
1,086,884	+		GFF1080	0.28	+1.6
1,086,884	+		GFF1080	0.28	-0.3
1,086,884	+		GFF1080	0.28	-0.4
1,086,884	+		GFF1080	0.28	-0.1
1,086,891	+		GFF1080	0.29	-0.2
1,086,892	-		GFF1080	0.29	-0.6
1,086,892	-		GFF1080	0.29	-1.8
1,086,892	-		GFF1080	0.29	+0.4
1,086,892	-		GFF1080	0.29	-0.2
1,086,893	+		GFF1080	0.29	+0.3
1,086,895	+		GFF1080	0.30	-0.6
1,086,912	+		GFF1080	0.32	-1.5
1,086,926	-		GFF1080	0.34	-1.3
1,086,933	+		GFF1080	0.35	-0.5
1,086,941	-		GFF1080	0.36	+1.6
1,086,941	-		GFF1080	0.36	-1.5
1,086,941	-		GFF1080	0.36	-1.9
1,086,952	+		GFF1080	0.38	+0.0
1,086,953	+		GFF1080	0.38	-0.4
1,086,953	+		GFF1080	0.38	+0.9
1,086,960	+		GFF1080	0.39	-0.4
1,086,960	+		GFF1080	0.39	+0.7
1,086,960	+		GFF1080	0.39	-0.6
1,086,960	+		GFF1080	0.39	-0.0
1,086,960	+		GFF1080	0.39	+0.0
1,086,960	+		GFF1080	0.39	+1.5
1,086,960	-		GFF1080	0.39	-1.4
1,086,960	-		GFF1080	0.39	+1.8
1,086,965	+		GFF1080	0.40	-0.6
1,086,965	+		GFF1080	0.40	-0.7
1,086,968	-		GFF1080	0.40	+0.0
1,086,968	-		GFF1080	0.40	+0.0
1,086,978	+		GFF1080	0.41	+0.3
1,087,005	+		GFF1080	0.45	+0.1
1,087,053	+		GFF1080	0.52	-0.8
1,087,056	+		GFF1080	0.52	-1.0
1,087,056	-		GFF1080	0.52	-0.8
1,087,061	-		GFF1080	0.53	-0.2
1,087,093	+		GFF1080	0.58	-1.0
1,087,100	+		GFF1080	0.59	-0.0
1,087,101	+		GFF1080	0.59	+0.6
1,087,101	+		GFF1080	0.59	+0.6
1,087,108	-		GFF1080	0.60	-0.6
1,087,114	-		GFF1080	0.61	+1.3
1,087,118	-		GFF1080	0.61	-1.8
1,087,119	-		GFF1080	0.61	-2.5
1,087,119	-		GFF1080	0.61	+0.4
1,087,121	+		GFF1080	0.62	+0.8
1,087,121	+		GFF1080	0.62	-1.3
1,087,121	+		GFF1080	0.62	-0.2
1,087,129	-		GFF1080	0.63	-2.2
1,087,131	+		GFF1080	0.63	-0.5
1,087,139	+		GFF1080	0.64	+0.2
1,087,139	-		GFF1080	0.64	+0.4
1,087,139	-		GFF1080	0.64	+0.1