Strain Fitness in Sphingobium sp. HT1-2 around GFF1070

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,076,275	+				-2.0
1,076,275	+				+0.6
1,076,283	-				-0.4
1,076,296	-				-1.3
1,076,305	-				+0.7
1,076,348	-				-0.7
1,076,362	-				+0.5
1,076,372	-				-1.3
1,076,380	+				+0.9
1,076,380	+				-0.5
1,076,383	-				+0.3
1,076,388	-				-1.3
1,076,395	+				-1.4
1,076,418	+				-0.0
1,076,418	-				+0.2
1,076,419	+				+0.5
1,076,428	-				+1.3
1,076,433	+				-0.8
1,076,436	-				+1.3
1,076,470	+		GFF1069	0.13	-0.2
1,076,472	+		GFF1069	0.14	+0.6
1,076,476	+		GFF1069	0.14	-1.4
1,076,480	-		GFF1069	0.15	-2.0
1,076,570	-		GFF1069	0.27	-0.5
1,076,576	-		GFF1069	0.27	+0.4
1,076,584	+		GFF1069	0.29	-1.9
1,076,587	-		GFF1069	0.29	+0.5
1,076,592	-		GFF1069	0.30	-1.0
1,076,592	-		GFF1069	0.30	+0.4
1,076,594	+		GFF1069	0.30	+0.3
1,076,594	+		GFF1069	0.30	+0.1
1,076,594	+		GFF1069	0.30	-0.1
1,076,599	+		GFF1069	0.31	+0.4
1,076,602	-		GFF1069	0.31	+0.1
1,076,602	-		GFF1069	0.31	+0.0
1,076,602	-		GFF1069	0.31	+0.5
1,076,602	-		GFF1069	0.31	-1.4
1,076,602	-		GFF1069	0.31	+0.4
1,076,607	-		GFF1069	0.32	-1.5
1,076,607	-		GFF1069	0.32	+0.0
1,076,607	-		GFF1069	0.32	+0.9
1,076,607	-		GFF1069	0.32	-0.8
1,076,612	-		GFF1069	0.32	+0.5
1,076,612	-		GFF1069	0.32	+0.9
1,076,620	-		GFF1069	0.33	+0.0
1,076,652	+		GFF1069	0.38	+0.1
1,076,652	+		GFF1069	0.38	-0.4
1,076,661	+		GFF1069	0.39	-1.0
1,076,661	+		GFF1069	0.39	-0.2
1,076,669	-		GFF1069	0.40	+0.3
1,076,702	+		GFF1069	0.44	-0.0
1,076,707	+		GFF1069	0.45	+0.2
1,076,722	+		GFF1069	0.47	-0.4
1,076,722	+		GFF1069	0.47	-0.0
1,076,722	+		GFF1069	0.47	+0.3
1,076,722	+		GFF1069	0.47	-1.4
1,076,730	-		GFF1069	0.48	-1.1
1,076,730	-		GFF1069	0.48	-0.0
1,076,748	-		GFF1069	0.50	-0.1
1,076,748	-		GFF1069	0.50	-1.1
1,076,751	+		GFF1069	0.51	-1.4
1,076,751	+		GFF1069	0.51	-0.9
1,076,751	+		GFF1069	0.51	+1.3
1,076,751	+		GFF1069	0.51	-0.0
1,076,759	-		GFF1069	0.52	-1.5
1,076,789	-		GFF1069	0.56	-0.4
1,076,807	+		GFF1069	0.58	-0.4
1,076,807	+		GFF1069	0.58	+0.3
1,076,815	-		GFF1069	0.59	+1.2
1,076,835	+		GFF1069	0.62	-1.8
1,076,849	-		GFF1069	0.64	+0.2
1,076,851	+		GFF1069	0.64	-0.0
1,076,853	+		GFF1069	0.65	+1.3
1,076,859	+		GFF1069	0.65	+0.6
1,076,859	+		GFF1069	0.65	+0.3
1,076,861	-		GFF1069	0.66	-1.5
1,076,861	-		GFF1069	0.66	-0.6
1,076,867	-		GFF1069	0.66	-0.3
1,076,872	-		GFF1069	0.67	-0.3
1,076,872	-		GFF1069	0.67	-0.2
1,076,872	-		GFF1069	0.67	+1.2
1,076,878	+		GFF1069	0.68	+1.3
1,076,878	+		GFF1069	0.68	+0.5
1,076,883	+		GFF1069	0.69	-0.6
1,076,883	+		GFF1069	0.69	+0.6
1,076,886	-		GFF1069	0.69	-0.7
1,076,886	-		GFF1069	0.69	+0.8
1,076,909	-		GFF1069	0.72	-0.8
1,076,916	+		GFF1069	0.73	-1.3
1,076,924	-		GFF1069	0.74	+0.2
1,076,924	-		GFF1069	0.74	-0.4
1,076,924	-		GFF1069	0.74	-1.5
1,076,978	-		GFF1069	0.81	+0.8
1,077,008	-		GFF1069	0.85	+0.2
1,077,027	-		GFF1069	0.88	-0.5
1,077,030	+		GFF1069	0.88	+1.2
1,077,049	-				+0.0
1,077,049	-				-0.1
1,077,062	-				+0.4
1,077,089	+				-2.2
1,077,089	+				-1.7
1,077,089	+				+0.5
1,077,097	-				+0.3
1,077,112	+				-2.0
1,077,112	+				-0.1
1,077,120	-				-0.1
1,077,147	+				-0.9
1,077,147	+				-2.0
1,077,152	+				-2.0
1,077,157	+				+0.7
1,077,157	+				+0.2
1,077,160	-				-0.6
1,077,165	-				-0.2
1,077,165	-				+0.0
1,077,165	-				+0.7
1,077,204	+				-0.6
1,077,204	+				-0.7
1,077,204	+				+0.5
1,077,204	+				+0.6
1,077,204	+				-1.6
1,077,204	+				+0.2
1,077,204	+				-0.2
1,077,204	+				-1.4
1,077,204	+				+0.4
1,077,210	+				-1.2
1,077,212	-				-1.4
1,077,218	-				-0.2
1,077,224	+				-0.2
1,078,573	+				-0.3
1,078,576	-				-0.4
1,078,581	-				+0.1
1,078,586	+				-0.5
1,078,591	+				+0.4
1,078,594	-				-0.2
1,078,596	+				+1.2
1,078,602	+				+0.5
1,078,625	+				-0.4
1,078,633	-				-0.5
1,078,639	-				-1.4
1,078,658	+				-0.8
1,078,702	-				-1.1
1,078,708	+				-1.6
1,078,708	+				+0.3
1,078,708	+				-1.3
1,078,708	+				-0.3
1,078,708	+				+0.8
1,078,708	+				+0.4
1,078,708	+				-0.6
1,078,713	+				+0.3
1,078,716	-				+0.1
1,078,716	-				+0.4
1,078,716	-				-0.3
1,078,716	-				-0.5
1,078,716	-				-0.6
1,078,716	-				-0.8
1,078,716	-				-0.1
1,078,716	-				-1.0
1,078,716	-				-0.4
1,078,716	-				-2.2
1,078,716	-				-0.3
1,078,743	-				-0.1
1,078,756	-		GFF1071	0.11	+0.2
1,078,761	-		GFF1071	0.11	+1.8
1,078,767	+		GFF1071	0.12	-2.4
1,078,777	+		GFF1071	0.12	-0.9
1,078,777	+		GFF1071	0.12	-1.0
1,078,777	+		GFF1071	0.12	+0.1
1,078,785	-		GFF1071	0.13	-1.7
1,078,785	-		GFF1071	0.13	-0.3
1,078,785	-		GFF1071	0.13	-0.3
1,078,785	-		GFF1071	0.13	+0.0
1,078,785	-		GFF1071	0.13	+0.6
1,078,785	-		GFF1071	0.13	-1.0
1,078,785	-		GFF1071	0.13	-0.5
1,078,785	-		GFF1071	0.13	+0.2
1,078,785	-		GFF1071	0.13	+0.1
1,078,786	+		GFF1071	0.13	-0.2
1,078,787	+		GFF1071	0.13	+0.9
1,078,796	-		GFF1071	0.14	+0.7
1,078,804	-		GFF1071	0.14	+0.1
1,078,811	-		GFF1071	0.15	-0.5
1,078,813	+		GFF1071	0.15	+0.8
1,078,821	-		GFF1071	0.16	-1.1
1,078,827	+		GFF1071	0.16	-0.7
1,078,827	+		GFF1071	0.16	+0.3
1,078,881	-		GFF1071	0.20	+0.7
1,078,892	+		GFF1071	0.21	-1.9
1,078,913	+		GFF1071	0.23	+0.7
1,078,920	+		GFF1071	0.23	-1.4
1,078,920	+		GFF1071	0.23	-0.5
1,078,928	-		GFF1071	0.24	-0.1
1,078,951	-		GFF1071	0.25	+0.3
1,078,951	-		GFF1071	0.25	-0.1
1,078,951	-		GFF1071	0.25	-0.8
1,078,958	+		GFF1071	0.26	-0.3
1,078,980	+		GFF1071	0.28	-1.5
1,078,980	+		GFF1071	0.28	-0.3
1,078,980	+		GFF1071	0.28	+0.2
1,078,988	-		GFF1071	0.28	-1.1
1,078,988	-		GFF1071	0.28	+0.1
1,078,988	-		GFF1071	0.28	-1.2
1,078,988	-		GFF1071	0.28	-0.8
1,079,003	-		GFF1071	0.29	-0.6
1,079,003	-		GFF1071	0.29	+0.6
1,079,021	-		GFF1071	0.31	+1.1
1,079,028	-		GFF1071	0.31	+0.0
1,079,043	-		GFF1071	0.32	-1.2
1,079,043	-		GFF1071	0.32	+0.0
1,079,046	+		GFF1071	0.33	+0.3
1,079,046	+		GFF1071	0.33	-0.0
1,079,054	-		GFF1071	0.33	+0.3
1,079,054	-		GFF1071	0.33	-0.1
1,079,054	-		GFF1071	0.33	-0.6
1,079,122	+		GFF1071	0.38	-0.3
1,079,127	+		GFF1071	0.39	+0.8
1,079,135	-		GFF1071	0.39	+0.7
1,079,135	-		GFF1071	0.39	-0.9
1,079,153	+		GFF1071	0.41	-0.4
1,079,157	-		GFF1071	0.41	-1.5
1,079,165	-		GFF1071	0.41	+1.5
1,079,171	+		GFF1071	0.42	-0.5
1,079,172	+		GFF1071	0.42	-0.4
1,079,184	-		GFF1071	0.43	+0.2
1,079,184	-		GFF1071	0.43	-0.2
1,079,201	+		GFF1071	0.44	-1.5
1,079,202	-		GFF1071	0.44	-1.7
1,079,248	-		GFF1071	0.48	-0.0
1,079,280	+		GFF1071	0.50	+0.2
1,079,280	+		GFF1071	0.50	+0.6
1,079,280	+		GFF1071	0.50	+0.7
1,079,288	-		GFF1071	0.51	+0.0
1,079,335	+		GFF1071	0.54	+0.8
1,079,338	-		GFF1071	0.54	-1.7
1,079,343	+		GFF1071	0.55	-0.8
1,079,343	+		GFF1071	0.55	+0.2
1,079,369	-		GFF1071	0.57	+0.9
1,079,376	+		GFF1071	0.57	-0.2
1,079,379	-		GFF1071	0.58	-1.8
1,079,384	-		GFF1071	0.58	+1.6
1,079,404	+		GFF1071	0.59	-1.4
1,079,404	-		GFF1071	0.59	-1.4
1,079,412	-		GFF1071	0.60	-0.5
1,079,427	+		GFF1071	0.61	-0.2
1,079,427	+		GFF1071	0.61	+0.6
1,079,443	-		GFF1071	0.62	+0.4
1,079,448	+		GFF1071	0.63	+0.8
1,079,457	+		GFF1071	0.63	-0.6
1,079,497	+		GFF1071	0.66	-0.2
1,079,497	+		GFF1071	0.66	-0.2
1,079,505	-		GFF1071	0.67	-1.9
1,079,511	-		GFF1071	0.67	-0.6
1,079,519	-		GFF1071	0.68	-0.9
1,079,528	-		GFF1071	0.69	-0.4
1,079,536	+		GFF1071	0.69	+0.9
1,079,541	+		GFF1071	0.70	+1.1
1,079,544	-		GFF1071	0.70	-1.0
1,079,544	-		GFF1071	0.70	+0.9
1,079,544	-		GFF1071	0.70	+0.8
1,079,546	+		GFF1071	0.70	-1.4
1,079,549	-		GFF1071	0.70	+0.1
1,079,549	-		GFF1071	0.70	-0.0
1,079,554	-		GFF1071	0.71	-0.6