Strain Fitness in Sphingobium sp. HT1-2 around GFF821

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF820 and GFF821 are separated by 64 nucleotidesGFF821 and GFF822 overlap by 4 nucleotidesGFF822 and GFF823 are separated by 28 nucleotides GFF820 - hypothetical protein, at 809,666 to 810,544 GFF820 GFF821 - 'Pyridoxal-5'-phosphate phosphatase (EC 3.1.3.74), Alphaproteobacterial type' transl_table=11, at 810,609 to 811,280 GFF821 GFF822 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 811,277 to 812,116 GFF822 GFF823 - Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 812,145 to 812,651 GFF823 Position (kb) 810 811 812Strain fitness (log2 ratio) -3 -2 -1 0 1at 809.627 kb on + strandat 809.703 kb on + strandat 809.735 kb on - strandat 809.747 kb on + strandat 809.747 kb on + strandat 809.760 kb on - strand, within GFF820at 809.842 kb on + strand, within GFF820at 809.901 kb on + strand, within GFF820at 809.914 kb on - strand, within GFF820at 809.937 kb on - strand, within GFF820at 809.968 kb on + strand, within GFF820at 810.109 kb on - strand, within GFF820at 810.148 kb on + strand, within GFF820at 810.207 kb on + strand, within GFF820at 810.305 kb on - strand, within GFF820at 810.333 kb on + strand, within GFF820at 810.337 kb on + strand, within GFF820at 810.341 kb on - strand, within GFF820at 810.341 kb on - strand, within GFF820at 810.458 kb on + strandat 810.463 kb on + strandat 810.466 kb on - strandat 810.487 kb on + strandat 810.500 kb on + strandat 810.500 kb on + strandat 810.500 kb on + strandat 810.534 kb on + strandat 810.535 kb on - strandat 810.555 kb on + strandat 810.564 kb on - strandat 810.571 kb on + strandat 810.576 kb on + strandat 810.576 kb on + strandat 810.579 kb on - strandat 810.579 kb on - strandat 810.579 kb on - strandat 810.579 kb on - strandat 810.601 kb on - strandat 810.618 kb on + strandat 810.618 kb on + strandat 810.618 kb on + strandat 810.618 kb on + strandat 810.620 kb on + strandat 810.626 kb on - strandat 810.626 kb on - strandat 810.626 kb on - strandat 810.626 kb on - strandat 810.626 kb on - strandat 810.626 kb on - strandat 810.626 kb on - strandat 810.626 kb on - strandat 810.627 kb on - strandat 810.648 kb on + strandat 810.648 kb on + strandat 810.653 kb on + strandat 810.653 kb on + strandat 810.653 kb on + strandat 810.653 kb on + strandat 810.656 kb on - strandat 810.661 kb on - strandat 810.670 kb on - strandat 810.679 kb on - strand, within GFF821at 810.685 kb on + strand, within GFF821at 810.694 kb on - strand, within GFF821at 810.704 kb on + strand, within GFF821at 810.715 kb on + strand, within GFF821at 810.715 kb on + strand, within GFF821at 810.727 kb on - strand, within GFF821at 810.729 kb on + strand, within GFF821at 810.736 kb on + strand, within GFF821at 810.737 kb on - strand, within GFF821at 810.737 kb on - strand, within GFF821at 810.785 kb on + strand, within GFF821at 810.795 kb on + strand, within GFF821at 810.795 kb on + strand, within GFF821at 810.795 kb on + strand, within GFF821at 810.797 kb on - strand, within GFF821at 810.798 kb on - strand, within GFF821at 810.803 kb on - strand, within GFF821at 810.823 kb on - strand, within GFF821at 810.852 kb on + strand, within GFF821at 810.852 kb on + strand, within GFF821at 810.852 kb on + strand, within GFF821at 810.858 kb on - strand, within GFF821at 810.860 kb on + strand, within GFF821at 810.860 kb on + strand, within GFF821at 810.868 kb on - strand, within GFF821at 810.878 kb on + strand, within GFF821at 810.891 kb on + strand, within GFF821at 810.899 kb on - strand, within GFF821at 810.907 kb on + strand, within GFF821at 810.912 kb on + strand, within GFF821at 810.912 kb on + strand, within GFF821at 810.915 kb on - strand, within GFF821at 810.915 kb on - strand, within GFF821at 810.922 kb on + strand, within GFF821at 810.927 kb on + strand, within GFF821at 810.940 kb on - strand, within GFF821at 810.941 kb on - strand, within GFF821at 810.956 kb on - strand, within GFF821at 810.997 kb on + strand, within GFF821at 810.997 kb on + strand, within GFF821at 811.005 kb on - strand, within GFF821at 811.017 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.037 kb on + strand, within GFF821at 811.045 kb on - strand, within GFF821at 811.045 kb on - strand, within GFF821at 811.045 kb on - strand, within GFF821at 811.050 kb on - strand, within GFF821at 811.055 kb on + strand, within GFF821at 811.058 kb on - strand, within GFF821at 811.060 kb on + strand, within GFF821at 811.060 kb on + strand, within GFF821at 811.060 kb on + strand, within GFF821at 811.060 kb on + strand, within GFF821at 811.060 kb on + strand, within GFF821at 811.060 kb on + strand, within GFF821at 811.063 kb on - strand, within GFF821at 811.065 kb on + strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.068 kb on - strand, within GFF821at 811.070 kb on + strand, within GFF821at 811.070 kb on + strand, within GFF821at 811.075 kb on - strand, within GFF821at 811.075 kb on - strand, within GFF821at 811.078 kb on - strand, within GFF821at 811.078 kb on - strand, within GFF821at 811.078 kb on - strand, within GFF821at 811.078 kb on - strand, within GFF821at 811.078 kb on - strand, within GFF821at 811.084 kb on + strand, within GFF821at 811.084 kb on + strand, within GFF821at 811.084 kb on + strand, within GFF821at 811.084 kb on + strand, within GFF821at 811.089 kb on + strand, within GFF821at 811.089 kb on + strand, within GFF821at 811.092 kb on - strand, within GFF821at 811.092 kb on - strand, within GFF821at 811.092 kb on - strand, within GFF821at 811.092 kb on - strand, within GFF821at 811.092 kb on - strand, within GFF821at 811.129 kb on + strand, within GFF821at 811.130 kb on + strand, within GFF821at 811.138 kb on - strand, within GFF821at 811.138 kb on - strand, within GFF821at 811.138 kb on - strand, within GFF821at 811.166 kb on - strand, within GFF821at 811.180 kb on + strand, within GFF821at 811.180 kb on + strand, within GFF821at 811.180 kb on + strand, within GFF821at 811.180 kb on + strand, within GFF821at 811.300 kb on + strandat 812.120 kb on - strandat 812.120 kb on - strandat 812.135 kb on - strandat 812.142 kb on + strandat 812.142 kb on + strandat 812.142 kb on + strandat 812.148 kb on + strandat 812.151 kb on + strandat 812.158 kb on - strandat 812.224 kb on + strand, within GFF823at 812.224 kb on - strand, within GFF823at 812.232 kb on - strand, within GFF823

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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809,627 + +0.4
809,703 + -1.3
809,735 - -0.2
809,747 + +0.8
809,747 + +0.1
809,760 - GFF820 0.11 -0.2
809,842 + GFF820 0.20 +0.4
809,901 + GFF820 0.27 -0.6
809,914 - GFF820 0.28 -0.2
809,937 - GFF820 0.31 +0.9
809,968 + GFF820 0.34 -1.0
810,109 - GFF820 0.50 -1.5
810,148 + GFF820 0.55 -1.2
810,207 + GFF820 0.62 -2.2
810,305 - GFF820 0.73 -1.4
810,333 + GFF820 0.76 -1.4
810,337 + GFF820 0.76 +1.2
810,341 - GFF820 0.77 -0.4
810,341 - GFF820 0.77 +0.1
810,458 + +0.4
810,463 + +0.4
810,466 - -1.3
810,487 + +0.6
810,500 + +0.4
810,500 + -0.0
810,500 + -1.5
810,534 + +0.1
810,535 - -1.2
810,555 + -1.7
810,564 - -3.1
810,571 + -1.4
810,576 + -1.5
810,576 + -1.4
810,579 - -1.3
810,579 - +0.4
810,579 - -1.0
810,579 - -0.9
810,601 - -2.3
810,618 + -0.6
810,618 + -0.1
810,618 + -0.7
810,618 + +0.2
810,620 + -1.3
810,626 - -1.7
810,626 - -1.2
810,626 - -2.0
810,626 - -0.7
810,626 - -1.5
810,626 - -1.2
810,626 - -1.6
810,626 - -1.8
810,627 - -2.2
810,648 + -1.8
810,648 + -0.6
810,653 + -0.6
810,653 + +0.1
810,653 + +0.5
810,653 + +0.3
810,656 - -1.2
810,661 - -1.3
810,670 - -1.5
810,679 - GFF821 0.10 +0.2
810,685 + GFF821 0.11 -0.2
810,694 - GFF821 0.13 -0.2
810,704 + GFF821 0.14 +0.0
810,715 + GFF821 0.16 -0.2
810,715 + GFF821 0.16 -3.3
810,727 - GFF821 0.18 -0.2
810,729 + GFF821 0.18 +0.6
810,736 + GFF821 0.19 -0.8
810,737 - GFF821 0.19 -1.2
810,737 - GFF821 0.19 -1.3
810,785 + GFF821 0.26 -0.3
810,795 + GFF821 0.28 -2.7
810,795 + GFF821 0.28 -1.9
810,795 + GFF821 0.28 -0.6
810,797 - GFF821 0.28 -1.2
810,798 - GFF821 0.28 -2.4
810,803 - GFF821 0.29 -2.0
810,823 - GFF821 0.32 -1.7
810,852 + GFF821 0.36 -0.7
810,852 + GFF821 0.36 -2.1
810,852 + GFF821 0.36 -1.4
810,858 - GFF821 0.37 -0.9
810,860 + GFF821 0.37 +1.3
810,860 + GFF821 0.37 +1.3
810,868 - GFF821 0.39 -0.5
810,878 + GFF821 0.40 -0.6
810,891 + GFF821 0.42 -1.2
810,899 - GFF821 0.43 -1.6
810,907 + GFF821 0.44 +1.3
810,912 + GFF821 0.45 +0.6
810,912 + GFF821 0.45 -0.8
810,915 - GFF821 0.46 -3.6
810,915 - GFF821 0.46 -1.2
810,922 + GFF821 0.47 +0.1
810,927 + GFF821 0.47 -2.0
810,940 - GFF821 0.49 +1.0
810,941 - GFF821 0.49 -0.9
810,956 - GFF821 0.52 -3.2
810,997 + GFF821 0.58 -1.6
810,997 + GFF821 0.58 -0.2
811,005 - GFF821 0.59 -0.8
811,017 + GFF821 0.61 +0.2
811,037 + GFF821 0.64 +0.9
811,037 + GFF821 0.64 -2.1
811,037 + GFF821 0.64 -2.2
811,037 + GFF821 0.64 +0.7
811,037 + GFF821 0.64 -0.7
811,037 + GFF821 0.64 +0.6
811,037 + GFF821 0.64 +1.1
811,037 + GFF821 0.64 +0.2
811,045 - GFF821 0.65 -1.5
811,045 - GFF821 0.65 +0.2
811,045 - GFF821 0.65 -1.1
811,050 - GFF821 0.66 -2.4
811,055 + GFF821 0.66 -0.7
811,058 - GFF821 0.67 -2.9
811,060 + GFF821 0.67 +0.4
811,060 + GFF821 0.67 -0.4
811,060 + GFF821 0.67 +0.1
811,060 + GFF821 0.67 +0.5
811,060 + GFF821 0.67 +0.8
811,060 + GFF821 0.67 -0.0
811,063 - GFF821 0.68 -2.9
811,065 + GFF821 0.68 +0.3
811,068 - GFF821 0.68 -2.4
811,068 - GFF821 0.68 -1.8
811,068 - GFF821 0.68 -0.8
811,068 - GFF821 0.68 -3.0
811,068 - GFF821 0.68 -2.5
811,068 - GFF821 0.68 -2.8
811,068 - GFF821 0.68 -2.6
811,068 - GFF821 0.68 -0.8
811,068 - GFF821 0.68 -2.9
811,070 + GFF821 0.69 +0.5
811,070 + GFF821 0.69 -0.2
811,075 - GFF821 0.69 -2.0
811,075 - GFF821 0.69 -1.5
811,078 - GFF821 0.70 -0.4
811,078 - GFF821 0.70 -2.0
811,078 - GFF821 0.70 -1.5
811,078 - GFF821 0.70 -0.2
811,078 - GFF821 0.70 +0.5
811,084 + GFF821 0.71 -1.8
811,084 + GFF821 0.71 +0.6
811,084 + GFF821 0.71 -1.6
811,084 + GFF821 0.71 -1.0
811,089 + GFF821 0.71 -0.4
811,089 + GFF821 0.71 +0.0
811,092 - GFF821 0.72 -2.8
811,092 - GFF821 0.72 -0.6
811,092 - GFF821 0.72 -2.9
811,092 - GFF821 0.72 -3.7
811,092 - GFF821 0.72 -1.6
811,129 + GFF821 0.77 +0.8
811,130 + GFF821 0.78 +0.4
811,138 - GFF821 0.79 -1.0
811,138 - GFF821 0.79 -0.2
811,138 - GFF821 0.79 -1.4
811,166 - GFF821 0.83 +0.3
811,180 + GFF821 0.85 -1.5
811,180 + GFF821 0.85 -1.4
811,180 + GFF821 0.85 +1.0
811,180 + GFF821 0.85 +0.8
811,300 + -1.5
812,120 - -1.4
812,120 - +0.5
812,135 - +0.1
812,142 + -0.6
812,142 + -0.2
812,142 + -1.3
812,148 + -3.0
812,151 + -1.9
812,158 - +0.4
812,224 + GFF823 0.16 -0.5
812,224 - GFF823 0.16 -1.4
812,232 - GFF823 0.17 -1.9

Or see this region's nucleotide sequence