Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF800 and GFF801 overlap by 4 nucleotides GFF801 and GFF802 are separated by 79 nucleotides
GFF800 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 787,826 to 788,950
GFF800
GFF801 - Phenazine biosynthesis protein PhzF like, at 788,947 to 789,732
GFF801
GFF802 - Sulfate permease, Trk-type, at 789,812 to 791,593
GFF802
Position (kb) 788
789
790 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.955 kb on + strand, within GFF800 at 787.960 kb on + strand, within GFF800 at 788.017 kb on + strand, within GFF800 at 788.025 kb on + strand, within GFF800 at 788.038 kb on + strand, within GFF800 at 788.049 kb on + strand, within GFF800 at 788.056 kb on + strand, within GFF800 at 788.071 kb on - strand, within GFF800 at 788.077 kb on - strand, within GFF800 at 788.084 kb on - strand, within GFF800 at 788.099 kb on + strand, within GFF800 at 788.102 kb on + strand, within GFF800 at 788.115 kb on - strand, within GFF800 at 788.115 kb on - strand, within GFF800 at 788.117 kb on + strand, within GFF800 at 788.138 kb on + strand, within GFF800 at 788.138 kb on + strand, within GFF800 at 788.141 kb on - strand, within GFF800 at 788.148 kb on + strand, within GFF800 at 788.148 kb on + strand, within GFF800 at 788.150 kb on - strand, within GFF800 at 788.156 kb on + strand, within GFF800 at 788.156 kb on - strand, within GFF800 at 788.156 kb on - strand, within GFF800 at 788.156 kb on - strand, within GFF800 at 788.160 kb on - strand, within GFF800 at 788.170 kb on - strand, within GFF800 at 788.201 kb on + strand, within GFF800 at 788.201 kb on + strand, within GFF800 at 788.201 kb on + strand, within GFF800 at 788.213 kb on - strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.232 kb on + strand, within GFF800 at 788.240 kb on - strand, within GFF800 at 788.240 kb on - strand, within GFF800 at 788.240 kb on - strand, within GFF800 at 788.262 kb on + strand, within GFF800 at 788.262 kb on + strand, within GFF800 at 788.262 kb on + strand, within GFF800 at 788.262 kb on + strand, within GFF800 at 788.262 kb on + strand, within GFF800 at 788.262 kb on + strand, within GFF800 at 788.262 kb on + strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.270 kb on - strand, within GFF800 at 788.275 kb on - strand, within GFF800 at 788.275 kb on - strand, within GFF800 at 788.276 kb on - strand, within GFF800 at 788.277 kb on + strand, within GFF800 at 788.279 kb on + strand, within GFF800 at 788.280 kb on - strand, within GFF800 at 788.305 kb on + strand, within GFF800 at 788.305 kb on + strand, within GFF800 at 788.311 kb on - strand, within GFF800 at 788.313 kb on - strand, within GFF800 at 788.313 kb on - strand, within GFF800 at 788.334 kb on - strand, within GFF800 at 788.334 kb on - strand, within GFF800 at 788.339 kb on + strand, within GFF800 at 788.344 kb on + strand, within GFF800 at 788.344 kb on + strand, within GFF800 at 788.344 kb on + strand, within GFF800 at 788.347 kb on - strand, within GFF800 at 788.352 kb on - strand, within GFF800 at 788.352 kb on - strand, within GFF800 at 788.386 kb on - strand, within GFF800 at 788.395 kb on + strand, within GFF800 at 788.395 kb on + strand, within GFF800 at 788.396 kb on + strand, within GFF800 at 788.403 kb on - strand, within GFF800 at 788.403 kb on - strand, within GFF800 at 788.404 kb on - strand, within GFF800 at 788.421 kb on + strand, within GFF800 at 788.435 kb on + strand, within GFF800 at 788.445 kb on + strand, within GFF800 at 788.453 kb on - strand, within GFF800 at 788.453 kb on - strand, within GFF800 at 788.469 kb on + strand, within GFF800 at 788.471 kb on - strand, within GFF800 at 788.477 kb on - strand, within GFF800 at 788.477 kb on - strand, within GFF800 at 788.492 kb on + strand, within GFF800 at 788.500 kb on - strand, within GFF800 at 788.500 kb on - strand, within GFF800 at 788.515 kb on + strand, within GFF800 at 788.536 kb on + strand, within GFF800 at 788.544 kb on - strand, within GFF800 at 788.544 kb on - strand, within GFF800 at 788.544 kb on - strand, within GFF800 at 788.544 kb on - strand, within GFF800 at 788.555 kb on - strand, within GFF800 at 788.601 kb on - strand, within GFF800 at 788.640 kb on + strand, within GFF800 at 788.737 kb on + strand, within GFF800 at 788.760 kb on - strand, within GFF800 at 788.783 kb on - strand, within GFF800 at 788.786 kb on + strand, within GFF800 at 788.794 kb on - strand, within GFF800 at 788.798 kb on + strand, within GFF800 at 788.877 kb on - strand at 788.891 kb on + strand at 788.904 kb on + strand at 788.912 kb on + strand at 788.912 kb on - strand at 788.952 kb on + strand at 788.954 kb on - strand at 788.960 kb on - strand at 788.960 kb on - strand at 788.960 kb on - strand at 788.960 kb on - strand at 788.962 kb on - strand at 788.989 kb on + strand at 789.055 kb on - strand, within GFF801 at 789.059 kb on - strand, within GFF801 at 789.076 kb on + strand, within GFF801 at 789.086 kb on + strand, within GFF801 at 789.086 kb on + strand, within GFF801 at 789.094 kb on - strand, within GFF801 at 789.094 kb on - strand, within GFF801 at 789.106 kb on + strand, within GFF801 at 789.300 kb on + strand, within GFF801 at 789.373 kb on + strand, within GFF801 at 789.373 kb on + strand, within GFF801 at 789.373 kb on + strand, within GFF801 at 789.373 kb on + strand, within GFF801 at 789.393 kb on + strand, within GFF801 at 789.393 kb on + strand, within GFF801 at 789.393 kb on + strand, within GFF801 at 789.394 kb on + strand, within GFF801 at 789.394 kb on + strand, within GFF801 at 789.400 kb on + strand, within GFF801 at 789.400 kb on + strand, within GFF801 at 789.400 kb on + strand, within GFF801 at 789.415 kb on + strand, within GFF801 at 789.458 kb on + strand, within GFF801 at 789.464 kb on + strand, within GFF801 at 789.466 kb on - strand, within GFF801 at 789.472 kb on - strand, within GFF801 at 789.474 kb on + strand, within GFF801 at 789.474 kb on + strand, within GFF801 at 789.482 kb on + strand, within GFF801 at 789.482 kb on + strand, within GFF801 at 789.482 kb on + strand, within GFF801 at 789.482 kb on - strand, within GFF801 at 789.482 kb on - strand, within GFF801 at 789.482 kb on - strand, within GFF801 at 789.482 kb on - strand, within GFF801 at 789.503 kb on + strand, within GFF801 at 789.510 kb on + strand, within GFF801 at 789.510 kb on + strand, within GFF801 at 789.510 kb on + strand, within GFF801 at 789.510 kb on + strand, within GFF801 at 789.518 kb on - strand, within GFF801 at 789.518 kb on - strand, within GFF801 at 789.518 kb on - strand, within GFF801 at 789.518 kb on - strand, within GFF801 at 789.518 kb on - strand, within GFF801 at 789.518 kb on - strand, within GFF801 at 789.528 kb on + strand, within GFF801 at 789.528 kb on + strand, within GFF801 at 789.533 kb on + strand, within GFF801 at 789.533 kb on + strand, within GFF801 at 789.541 kb on - strand, within GFF801 at 789.564 kb on + strand, within GFF801 at 789.590 kb on - strand, within GFF801 at 789.598 kb on - strand, within GFF801 at 789.630 kb on - strand, within GFF801 at 789.646 kb on + strand, within GFF801 at 789.665 kb on - strand at 789.687 kb on - strand at 789.701 kb on + strand at 789.709 kb on - strand at 789.709 kb on - strand at 789.735 kb on - strand at 789.777 kb on - strand at 789.912 kb on + strand at 789.922 kb on + strand at 789.929 kb on + strand at 790.000 kb on + strand, within GFF802 at 790.008 kb on - strand, within GFF802 at 790.008 kb on - strand, within GFF802 at 790.013 kb on - strand, within GFF802 at 790.013 kb on - strand, within GFF802 at 790.013 kb on - strand, within GFF802 at 790.021 kb on + strand, within GFF802 at 790.065 kb on + strand, within GFF802 at 790.078 kb on - strand, within GFF802 at 790.083 kb on - strand, within GFF802 at 790.083 kb on - strand, within GFF802 at 790.085 kb on + strand, within GFF802 at 790.129 kb on - strand, within GFF802 at 790.136 kb on - strand, within GFF802 at 790.142 kb on - strand, within GFF802 at 790.147 kb on + strand, within GFF802 at 790.187 kb on + strand, within GFF802 at 790.251 kb on + strand, within GFF802 at 790.256 kb on + strand, within GFF802 at 790.256 kb on + strand, within GFF802 at 790.256 kb on + strand, within GFF802 at 790.256 kb on + strand, within GFF802 at 790.259 kb on - strand, within GFF802 at 790.259 kb on - strand, within GFF802 at 790.259 kb on - strand, within GFF802 at 790.261 kb on + strand, within GFF802 at 790.261 kb on + strand, within GFF802 at 790.264 kb on - strand, within GFF802 at 790.288 kb on + strand, within GFF802 at 790.297 kb on - strand, within GFF802 at 790.318 kb on + strand, within GFF802 at 790.326 kb on - strand, within GFF802 at 790.326 kb on - strand, within GFF802 at 790.348 kb on + strand, within GFF802 at 790.349 kb on + strand, within GFF802 at 790.357 kb on - strand, within GFF802 at 790.388 kb on - strand, within GFF802 at 790.404 kb on + strand, within GFF802 at 790.409 kb on + strand, within GFF802 at 790.410 kb on - strand, within GFF802 at 790.410 kb on - strand, within GFF802 at 790.430 kb on + strand, within GFF802 at 790.443 kb on - strand, within GFF802 at 790.443 kb on - strand, within GFF802 at 790.465 kb on + strand, within GFF802 at 790.505 kb on - strand, within GFF802 at 790.517 kb on + strand, within GFF802 at 790.522 kb on + strand, within GFF802 at 790.522 kb on + strand, within GFF802 at 790.523 kb on + strand, within GFF802 at 790.530 kb on - strand, within GFF802 at 790.535 kb on - strand, within GFF802 at 790.564 kb on + strand, within GFF802 at 790.576 kb on + strand, within GFF802 at 790.576 kb on + strand, within GFF802 at 790.584 kb on - strand, within GFF802 at 790.649 kb on - strand, within GFF802 at 790.649 kb on - strand, within GFF802 at 790.668 kb on - strand, within GFF802 at 790.686 kb on + strand, within GFF802 at 790.704 kb on - strand, within GFF802 at 790.722 kb on + strand, within GFF802 at 790.724 kb on + strand, within GFF802
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 787,955 + GFF800 0.11 -0.3 787,960 + GFF800 0.12 -0.6 788,017 + GFF800 0.17 +1.0 788,025 + GFF800 0.18 -0.2 788,038 + GFF800 0.19 +0.0 788,049 + GFF800 0.20 -0.8 788,056 + GFF800 0.20 +0.4 788,071 - GFF800 0.22 -0.3 788,077 - GFF800 0.22 +0.4 788,084 - GFF800 0.23 +0.8 788,099 + GFF800 0.24 -0.1 788,102 + GFF800 0.25 +2.4 788,115 - GFF800 0.26 +0.3 788,115 - GFF800 0.26 -1.1 788,117 + GFF800 0.26 +1.4 788,138 + GFF800 0.28 -2.3 788,138 + GFF800 0.28 -0.3 788,141 - GFF800 0.28 +0.6 788,148 + GFF800 0.29 +1.6 788,148 + GFF800 0.29 -1.3 788,150 - GFF800 0.29 -0.1 788,156 + GFF800 0.29 +0.5 788,156 - GFF800 0.29 +0.4 788,156 - GFF800 0.29 +0.3 788,156 - GFF800 0.29 -1.1 788,160 - GFF800 0.30 -1.1 788,170 - GFF800 0.31 +0.8 788,201 + GFF800 0.33 +1.4 788,201 + GFF800 0.33 -1.5 788,201 + GFF800 0.33 -0.0 788,213 - GFF800 0.34 -0.3 788,232 + GFF800 0.36 -0.1 788,232 + GFF800 0.36 -1.2 788,232 + GFF800 0.36 +1.2 788,232 + GFF800 0.36 -0.9 788,232 + GFF800 0.36 +1.0 788,232 + GFF800 0.36 +0.9 788,232 + GFF800 0.36 +1.7 788,232 + GFF800 0.36 +2.4 788,240 - GFF800 0.37 -1.4 788,240 - GFF800 0.37 +1.0 788,240 - GFF800 0.37 -0.3 788,262 + GFF800 0.39 -0.2 788,262 + GFF800 0.39 -0.6 788,262 + GFF800 0.39 +1.7 788,262 + GFF800 0.39 +0.2 788,262 + GFF800 0.39 -0.8 788,262 + GFF800 0.39 +0.6 788,262 + GFF800 0.39 -0.5 788,270 - GFF800 0.39 +0.1 788,270 - GFF800 0.39 -0.4 788,270 - GFF800 0.39 -1.1 788,270 - GFF800 0.39 -1.8 788,270 - GFF800 0.39 +0.3 788,270 - GFF800 0.39 +0.3 788,270 - GFF800 0.39 +0.3 788,270 - GFF800 0.39 -0.1 788,270 - GFF800 0.39 -0.4 788,275 - GFF800 0.40 -2.6 788,275 - GFF800 0.40 +2.7 788,276 - GFF800 0.40 -0.1 788,277 + GFF800 0.40 -2.1 788,279 + GFF800 0.40 -0.2 788,280 - GFF800 0.40 -1.2 788,305 + GFF800 0.43 +0.0 788,305 + GFF800 0.43 -0.9 788,311 - GFF800 0.43 -0.6 788,313 - GFF800 0.43 -0.4 788,313 - GFF800 0.43 -0.3 788,334 - GFF800 0.45 -1.4 788,334 - GFF800 0.45 -1.1 788,339 + GFF800 0.46 +0.9 788,344 + GFF800 0.46 -0.1 788,344 + GFF800 0.46 -1.1 788,344 + GFF800 0.46 +0.7 788,347 - GFF800 0.46 +0.5 788,352 - GFF800 0.47 -0.3 788,352 - GFF800 0.47 +0.5 788,386 - GFF800 0.50 -0.9 788,395 + GFF800 0.51 -2.5 788,395 + GFF800 0.51 -0.3 788,396 + GFF800 0.51 -0.9 788,403 - GFF800 0.51 -1.3 788,403 - GFF800 0.51 -1.3 788,404 - GFF800 0.51 -0.1 788,421 + GFF800 0.53 +1.7 788,435 + GFF800 0.54 +0.1 788,445 + GFF800 0.55 +0.1 788,453 - GFF800 0.56 +0.3 788,453 - GFF800 0.56 -1.4 788,469 + GFF800 0.57 -0.3 788,471 - GFF800 0.57 -1.6 788,477 - GFF800 0.58 -0.4 788,477 - GFF800 0.58 +1.7 788,492 + GFF800 0.59 -0.5 788,500 - GFF800 0.60 -0.5 788,500 - GFF800 0.60 -0.0 788,515 + GFF800 0.61 -0.3 788,536 + GFF800 0.63 +0.8 788,544 - GFF800 0.64 -1.0 788,544 - GFF800 0.64 -1.3 788,544 - GFF800 0.64 +0.1 788,544 - GFF800 0.64 +0.7 788,555 - GFF800 0.65 +2.0 788,601 - GFF800 0.69 -0.2 788,640 + GFF800 0.72 +0.0 788,737 + GFF800 0.81 +0.8 788,760 - GFF800 0.83 -0.2 788,783 - GFF800 0.85 -0.4 788,786 + GFF800 0.85 +0.2 788,794 - GFF800 0.86 -0.1 788,798 + GFF800 0.86 +0.4 788,877 - +0.2 788,891 + +0.5 788,904 + +1.5 788,912 + -0.6 788,912 - -0.0 788,952 + -1.9 788,954 - -1.2 788,960 - -0.9 788,960 - +1.5 788,960 - -0.2 788,960 - -2.1 788,962 - -1.1 788,989 + +1.1 789,055 - GFF801 0.14 -0.4 789,059 - GFF801 0.14 -0.9 789,076 + GFF801 0.16 +0.1 789,086 + GFF801 0.18 -0.6 789,086 + GFF801 0.18 -1.0 789,094 - GFF801 0.19 -2.3 789,094 - GFF801 0.19 +0.6 789,106 + GFF801 0.20 -0.4 789,300 + GFF801 0.45 +0.1 789,373 + GFF801 0.54 +0.4 789,373 + GFF801 0.54 +0.2 789,373 + GFF801 0.54 -0.3 789,373 + GFF801 0.54 -0.0 789,393 + GFF801 0.57 -0.2 789,393 + GFF801 0.57 -0.0 789,393 + GFF801 0.57 -1.0 789,394 + GFF801 0.57 -1.2 789,394 + GFF801 0.57 +1.0 789,400 + GFF801 0.58 +1.1 789,400 + GFF801 0.58 -0.4 789,400 + GFF801 0.58 -0.3 789,415 + GFF801 0.60 -0.9 789,458 + GFF801 0.65 -0.1 789,464 + GFF801 0.66 +0.1 789,466 - GFF801 0.66 +0.4 789,472 - GFF801 0.67 +0.1 789,474 + GFF801 0.67 -0.9 789,474 + GFF801 0.67 +1.3 789,482 + GFF801 0.68 +0.1 789,482 + GFF801 0.68 -0.1 789,482 + GFF801 0.68 -1.0 789,482 - GFF801 0.68 -0.1 789,482 - GFF801 0.68 +1.7 789,482 - GFF801 0.68 -0.5 789,482 - GFF801 0.68 +0.1 789,503 + GFF801 0.71 +0.8 789,510 + GFF801 0.72 +0.3 789,510 + GFF801 0.72 -0.8 789,510 + GFF801 0.72 -0.1 789,510 + GFF801 0.72 -0.4 789,518 - GFF801 0.73 +0.2 789,518 - GFF801 0.73 -0.5 789,518 - GFF801 0.73 -0.4 789,518 - GFF801 0.73 +0.1 789,518 - GFF801 0.73 -0.9 789,518 - GFF801 0.73 +0.4 789,528 + GFF801 0.74 +0.1 789,528 + GFF801 0.74 -0.4 789,533 + GFF801 0.75 +0.4 789,533 + GFF801 0.75 +0.7 789,541 - GFF801 0.76 +0.3 789,564 + GFF801 0.78 +0.2 789,590 - GFF801 0.82 +0.2 789,598 - GFF801 0.83 -1.7 789,630 - GFF801 0.87 +0.9 789,646 + GFF801 0.89 -1.0 789,665 - +0.3 789,687 - +0.1 789,701 + +0.6 789,709 - -1.3 789,709 - +0.5 789,735 - +0.4 789,777 - -1.3 789,912 + +0.6 789,922 + +0.7 789,929 + +0.7 790,000 + GFF802 0.11 -1.1 790,008 - GFF802 0.11 +0.7 790,008 - GFF802 0.11 -0.2 790,013 - GFF802 0.11 -1.5 790,013 - GFF802 0.11 -1.0 790,013 - GFF802 0.11 -0.2 790,021 + GFF802 0.12 -0.2 790,065 + GFF802 0.14 -1.7 790,078 - GFF802 0.15 +1.5 790,083 - GFF802 0.15 -0.9 790,083 - GFF802 0.15 -0.3 790,085 + GFF802 0.15 +1.4 790,129 - GFF802 0.18 -0.8 790,136 - GFF802 0.18 +0.1 790,142 - GFF802 0.19 +1.2 790,147 + GFF802 0.19 -0.5 790,187 + GFF802 0.21 -1.4 790,251 + GFF802 0.25 +0.2 790,256 + GFF802 0.25 -0.5 790,256 + GFF802 0.25 -3.0 790,256 + GFF802 0.25 +0.3 790,256 + GFF802 0.25 -2.1 790,259 - GFF802 0.25 +0.3 790,259 - GFF802 0.25 -1.2 790,259 - GFF802 0.25 +1.2 790,261 + GFF802 0.25 +0.4 790,261 + GFF802 0.25 -0.9 790,264 - GFF802 0.25 +0.6 790,288 + GFF802 0.27 -0.5 790,297 - GFF802 0.27 +0.0 790,318 + GFF802 0.28 -1.1 790,326 - GFF802 0.29 -0.3 790,326 - GFF802 0.29 +0.7 790,348 + GFF802 0.30 +0.8 790,349 + GFF802 0.30 +0.4 790,357 - GFF802 0.31 +1.4 790,388 - GFF802 0.32 +0.8 790,404 + GFF802 0.33 -0.5 790,409 + GFF802 0.34 +0.6 790,410 - GFF802 0.34 -0.3 790,410 - GFF802 0.34 +0.3 790,430 + GFF802 0.35 +0.8 790,443 - GFF802 0.35 -2.3 790,443 - GFF802 0.35 -1.9 790,465 + GFF802 0.37 -1.6 790,505 - GFF802 0.39 -0.2 790,517 + GFF802 0.40 +0.6 790,522 + GFF802 0.40 -2.9 790,522 + GFF802 0.40 -1.6 790,523 + GFF802 0.40 +1.2 790,530 - GFF802 0.40 -0.0 790,535 - GFF802 0.41 +0.7 790,564 + GFF802 0.42 -0.6 790,576 + GFF802 0.43 -1.1 790,576 + GFF802 0.43 -0.5 790,584 - GFF802 0.43 +0.3 790,649 - GFF802 0.47 -0.3 790,649 - GFF802 0.47 -0.5 790,668 - GFF802 0.48 -0.3 790,686 + GFF802 0.49 -1.0 790,704 - GFF802 0.50 -0.7 790,722 + GFF802 0.51 -0.3 790,724 + GFF802 0.51 +0.2
Or see this region's nucleotide sequence