Strain Fitness in Sphingobium sp. HT1-2 around GFF744

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF742 and GFF743 overlap by 46 nucleotidesGFF743 and GFF744 are separated by 120 nucleotidesGFF744 and GFF745 are separated by 133 nucleotides GFF742 - Aspartate aminotransferase (EC 2.6.1.1), at 729,469 to 730,641 GFF742 GFF743 - hypothetical protein, at 730,596 to 731,108 GFF743 GFF744 - Dehydrogenase, at 731,229 to 732,014 GFF744 GFF745 - Non-heme chloroperoxidase, at 732,148 to 732,978 GFF745 Position (kb) 731 732 733Strain fitness (log2 ratio) -2 -1 0 1 2at 730.239 kb on - strand, within GFF742at 730.239 kb on - strand, within GFF742at 730.251 kb on + strand, within GFF742at 730.259 kb on - strand, within GFF742at 730.259 kb on - strand, within GFF742at 730.260 kb on - strand, within GFF742at 730.262 kb on + strand, within GFF742at 730.262 kb on + strand, within GFF742at 730.294 kb on - strand, within GFF742at 730.294 kb on - strand, within GFF742at 730.300 kb on + strand, within GFF742at 730.300 kb on + strand, within GFF742at 730.308 kb on - strand, within GFF742at 730.313 kb on - strand, within GFF742at 730.313 kb on - strand, within GFF742at 730.354 kb on - strand, within GFF742at 730.370 kb on + strand, within GFF742at 730.370 kb on + strand, within GFF742at 730.380 kb on + strand, within GFF742at 730.380 kb on + strand, within GFF742at 730.380 kb on + strand, within GFF742at 730.380 kb on + strand, within GFF742at 730.388 kb on - strand, within GFF742at 730.388 kb on - strand, within GFF742at 730.388 kb on - strand, within GFF742at 730.389 kb on + strand, within GFF742at 730.404 kb on + strand, within GFF742at 730.404 kb on + strand, within GFF742at 730.416 kb on + strand, within GFF742at 730.420 kb on - strand, within GFF742at 730.421 kb on + strand, within GFF742at 730.421 kb on + strand, within GFF742at 730.421 kb on + strand, within GFF742at 730.429 kb on - strand, within GFF742at 730.430 kb on + strand, within GFF742at 730.493 kb on - strand, within GFF742at 730.521 kb on - strand, within GFF742at 730.532 kb on + strandat 730.550 kb on + strandat 730.630 kb on + strandat 730.630 kb on + strandat 730.636 kb on + strandat 730.646 kb on + strandat 730.693 kb on - strand, within GFF743at 730.694 kb on - strand, within GFF743at 730.694 kb on - strand, within GFF743at 730.704 kb on + strand, within GFF743at 730.717 kb on - strand, within GFF743at 730.834 kb on - strand, within GFF743at 730.849 kb on - strand, within GFF743at 730.849 kb on - strand, within GFF743at 730.849 kb on - strand, within GFF743at 730.872 kb on + strand, within GFF743at 730.880 kb on - strand, within GFF743at 730.880 kb on - strand, within GFF743at 730.891 kb on - strand, within GFF743at 730.964 kb on - strand, within GFF743at 730.997 kb on + strand, within GFF743at 730.997 kb on + strand, within GFF743at 730.997 kb on + strand, within GFF743at 730.997 kb on + strand, within GFF743at 730.998 kb on + strand, within GFF743at 730.998 kb on + strand, within GFF743at 731.005 kb on - strand, within GFF743at 731.005 kb on - strand, within GFF743at 731.048 kb on + strand, within GFF743at 731.090 kb on - strandat 731.198 kb on + strandat 731.240 kb on + strandat 731.248 kb on - strandat 731.248 kb on - strandat 731.260 kb on + strandat 731.273 kb on + strandat 731.277 kb on + strandat 731.281 kb on - strandat 731.281 kb on - strandat 731.281 kb on - strandat 731.325 kb on + strand, within GFF744at 731.333 kb on - strand, within GFF744at 731.334 kb on + strand, within GFF744at 731.334 kb on + strand, within GFF744at 731.341 kb on - strand, within GFF744at 731.341 kb on - strand, within GFF744at 731.364 kb on - strand, within GFF744at 731.370 kb on + strand, within GFF744at 731.375 kb on + strand, within GFF744at 731.375 kb on + strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.378 kb on - strand, within GFF744at 731.412 kb on + strand, within GFF744at 731.431 kb on - strand, within GFF744at 731.433 kb on + strand, within GFF744at 731.441 kb on - strand, within GFF744at 731.441 kb on - strand, within GFF744at 731.467 kb on - strand, within GFF744at 731.467 kb on - strand, within GFF744at 731.477 kb on - strand, within GFF744at 731.477 kb on - strand, within GFF744at 731.487 kb on - strand, within GFF744at 731.496 kb on - strand, within GFF744at 731.511 kb on + strand, within GFF744at 731.532 kb on + strand, within GFF744at 731.532 kb on + strand, within GFF744at 731.532 kb on + strand, within GFF744at 731.535 kb on - strand, within GFF744at 731.539 kb on + strand, within GFF744at 731.540 kb on - strand, within GFF744at 731.544 kb on + strand, within GFF744at 731.547 kb on - strand, within GFF744at 731.547 kb on - strand, within GFF744at 731.552 kb on - strand, within GFF744at 731.565 kb on - strand, within GFF744at 731.567 kb on - strand, within GFF744at 731.569 kb on + strand, within GFF744at 731.605 kb on + strand, within GFF744at 731.605 kb on + strand, within GFF744at 731.605 kb on + strand, within GFF744at 731.613 kb on - strand, within GFF744at 731.621 kb on + strand, within GFF744at 731.626 kb on - strand, within GFF744at 731.661 kb on - strand, within GFF744at 731.666 kb on - strand, within GFF744at 731.682 kb on + strand, within GFF744at 731.690 kb on + strand, within GFF744at 731.694 kb on - strand, within GFF744at 731.717 kb on - strand, within GFF744at 731.725 kb on + strand, within GFF744at 731.730 kb on + strand, within GFF744at 731.730 kb on + strand, within GFF744at 731.778 kb on - strand, within GFF744at 731.805 kb on - strand, within GFF744at 731.854 kb on - strand, within GFF744at 731.929 kb on - strand, within GFF744at 731.930 kb on - strand, within GFF744at 731.955 kb on + strandat 731.956 kb on + strandat 731.979 kb on - strandat 732.004 kb on - strandat 732.004 kb on - strandat 732.011 kb on - strandat 732.069 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.075 kb on - strandat 732.105 kb on + strandat 732.105 kb on + strandat 732.107 kb on + strandat 732.130 kb on + strandat 732.130 kb on + strandat 732.139 kb on + strandat 732.139 kb on + strandat 732.171 kb on + strandat 732.171 kb on + strandat 732.176 kb on + strandat 732.176 kb on + strandat 732.179 kb on - strandat 732.179 kb on - strandat 732.179 kb on - strandat 732.184 kb on - strandat 732.187 kb on + strandat 732.187 kb on + strandat 732.187 kb on + strandat 732.187 kb on + strandat 732.195 kb on - strandat 732.197 kb on + strandat 732.205 kb on - strandat 732.214 kb on + strandat 732.214 kb on + strandat 732.232 kb on + strand, within GFF745at 732.268 kb on - strand, within GFF745at 732.301 kb on - strand, within GFF745at 732.311 kb on + strand, within GFF745at 732.311 kb on + strand, within GFF745at 732.315 kb on + strand, within GFF745at 732.389 kb on + strand, within GFF745at 732.393 kb on + strand, within GFF745at 732.397 kb on - strand, within GFF745at 732.404 kb on + strand, within GFF745at 732.450 kb on - strand, within GFF745at 732.467 kb on - strand, within GFF745at 732.490 kb on + strand, within GFF745at 732.490 kb on + strand, within GFF745at 732.490 kb on + strand, within GFF745at 732.493 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.498 kb on - strand, within GFF745at 732.544 kb on + strand, within GFF745at 732.580 kb on - strand, within GFF745at 732.603 kb on + strand, within GFF745at 732.621 kb on - strand, within GFF745at 732.641 kb on + strand, within GFF745at 732.707 kb on - strand, within GFF745at 732.712 kb on - strand, within GFF745at 732.714 kb on + strand, within GFF745at 732.715 kb on + strand, within GFF745at 732.722 kb on - strand, within GFF745at 732.723 kb on - strand, within GFF745at 732.773 kb on + strand, within GFF745at 732.792 kb on + strand, within GFF745at 732.813 kb on - strand, within GFF745at 732.816 kb on - strand, within GFF745at 732.829 kb on + strand, within GFF745at 732.837 kb on - strand, within GFF745at 732.912 kb on - strandat 732.923 kb on + strandat 732.923 kb on + strandat 732.930 kb on - strandat 732.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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730,239 - GFF742 0.66 +0.8
730,239 - GFF742 0.66 +1.4
730,251 + GFF742 0.67 +1.2
730,259 - GFF742 0.67 +1.8
730,259 - GFF742 0.67 -0.8
730,260 - GFF742 0.67 +0.4
730,262 + GFF742 0.68 +1.0
730,262 + GFF742 0.68 -1.8
730,294 - GFF742 0.70 -0.1
730,294 - GFF742 0.70 +0.7
730,300 + GFF742 0.71 -0.3
730,300 + GFF742 0.71 -0.2
730,308 - GFF742 0.72 +0.4
730,313 - GFF742 0.72 +0.1
730,313 - GFF742 0.72 -1.6
730,354 - GFF742 0.75 -1.9
730,370 + GFF742 0.77 +0.5
730,370 + GFF742 0.77 -0.1
730,380 + GFF742 0.78 +0.6
730,380 + GFF742 0.78 -0.2
730,380 + GFF742 0.78 +0.5
730,380 + GFF742 0.78 -0.9
730,388 - GFF742 0.78 -0.3
730,388 - GFF742 0.78 -0.2
730,388 - GFF742 0.78 +1.7
730,389 + GFF742 0.78 -0.1
730,404 + GFF742 0.80 -0.8
730,404 + GFF742 0.80 +0.8
730,416 + GFF742 0.81 +0.5
730,420 - GFF742 0.81 +0.4
730,421 + GFF742 0.81 -2.4
730,421 + GFF742 0.81 +0.1
730,421 + GFF742 0.81 +0.3
730,429 - GFF742 0.82 -0.6
730,430 + GFF742 0.82 +0.4
730,493 - GFF742 0.87 +0.5
730,521 - GFF742 0.90 -2.3
730,532 + +0.4
730,550 + +0.8
730,630 + -1.3
730,630 + +0.6
730,636 + -1.7
730,646 + +0.8
730,693 - GFF743 0.19 -0.9
730,694 - GFF743 0.19 -0.4
730,694 - GFF743 0.19 -1.3
730,704 + GFF743 0.21 -0.0
730,717 - GFF743 0.24 +0.6
730,834 - GFF743 0.46 -0.8
730,849 - GFF743 0.49 -0.2
730,849 - GFF743 0.49 -1.2
730,849 - GFF743 0.49 +1.1
730,872 + GFF743 0.54 -1.2
730,880 - GFF743 0.55 -0.3
730,880 - GFF743 0.55 +0.2
730,891 - GFF743 0.58 -0.3
730,964 - GFF743 0.72 +1.9
730,997 + GFF743 0.78 -0.8
730,997 + GFF743 0.78 +0.3
730,997 + GFF743 0.78 -1.9
730,997 + GFF743 0.78 +0.5
730,998 + GFF743 0.78 -0.3
730,998 + GFF743 0.78 +0.1
731,005 - GFF743 0.80 +0.4
731,005 - GFF743 0.80 -0.8
731,048 + GFF743 0.88 +0.5
731,090 - +0.4
731,198 + +0.9
731,240 + +0.3
731,248 - +1.4
731,248 - +0.1
731,260 + -0.1
731,273 + +1.0
731,277 + +0.8
731,281 - -0.4
731,281 - +0.7
731,281 - -0.1
731,325 + GFF744 0.12 -0.6
731,333 - GFF744 0.13 +0.9
731,334 + GFF744 0.13 -0.4
731,334 + GFF744 0.13 +0.2
731,341 - GFF744 0.14 +0.9
731,341 - GFF744 0.14 +0.6
731,364 - GFF744 0.17 -0.8
731,370 + GFF744 0.18 +0.2
731,375 + GFF744 0.19 +0.6
731,375 + GFF744 0.19 -0.1
731,378 - GFF744 0.19 +1.5
731,378 - GFF744 0.19 +0.3
731,378 - GFF744 0.19 -0.2
731,378 - GFF744 0.19 -2.1
731,412 + GFF744 0.23 +1.1
731,431 - GFF744 0.26 -2.4
731,433 + GFF744 0.26 -1.1
731,441 - GFF744 0.27 +0.4
731,441 - GFF744 0.27 +0.5
731,467 - GFF744 0.30 -0.1
731,467 - GFF744 0.30 -0.1
731,477 - GFF744 0.32 -0.3
731,477 - GFF744 0.32 -1.1
731,487 - GFF744 0.33 -1.3
731,496 - GFF744 0.34 -1.3
731,511 + GFF744 0.36 -0.5
731,532 + GFF744 0.39 +0.8
731,532 + GFF744 0.39 +0.7
731,532 + GFF744 0.39 -0.4
731,535 - GFF744 0.39 +0.2
731,539 + GFF744 0.39 +0.1
731,540 - GFF744 0.40 -0.9
731,544 + GFF744 0.40 -0.6
731,547 - GFF744 0.40 +1.1
731,547 - GFF744 0.40 +0.3
731,552 - GFF744 0.41 -0.1
731,565 - GFF744 0.43 -1.0
731,567 - GFF744 0.43 +1.0
731,569 + GFF744 0.43 -1.2
731,605 + GFF744 0.48 -0.5
731,605 + GFF744 0.48 -0.4
731,605 + GFF744 0.48 -1.0
731,613 - GFF744 0.49 -0.4
731,621 + GFF744 0.50 +0.5
731,626 - GFF744 0.51 +0.4
731,661 - GFF744 0.55 +0.5
731,666 - GFF744 0.56 -0.5
731,682 + GFF744 0.58 +0.3
731,690 + GFF744 0.59 -0.8
731,694 - GFF744 0.59 -0.3
731,717 - GFF744 0.62 -1.3
731,725 + GFF744 0.63 -1.0
731,730 + GFF744 0.64 -0.3
731,730 + GFF744 0.64 +1.0
731,778 - GFF744 0.70 -1.4
731,805 - GFF744 0.73 -0.3
731,854 - GFF744 0.80 -1.9
731,929 - GFF744 0.89 -0.8
731,930 - GFF744 0.89 +0.1
731,955 + +0.8
731,956 + +1.0
731,979 - -1.1
732,004 - -1.5
732,004 - -1.3
732,011 - -2.6
732,069 - -0.5
732,075 - +0.4
732,075 - -1.6
732,075 - -1.8
732,075 - -1.9
732,075 - -0.5
732,105 + -1.1
732,105 + +0.4
732,107 + -0.1
732,130 + -1.3
732,130 + -0.1
732,139 + -0.5
732,139 + -1.9
732,171 + +0.2
732,171 + +2.6
732,176 + -0.6
732,176 + -0.4
732,179 - -0.3
732,179 - -0.5
732,179 - -2.1
732,184 - -0.2
732,187 + -1.2
732,187 + -2.1
732,187 + +0.5
732,187 + -0.8
732,195 - -1.0
732,197 + -0.4
732,205 - -1.2
732,214 + -0.9
732,214 + -0.9
732,232 + GFF745 0.10 -0.7
732,268 - GFF745 0.14 -0.1
732,301 - GFF745 0.18 -1.2
732,311 + GFF745 0.20 +1.4
732,311 + GFF745 0.20 +0.6
732,315 + GFF745 0.20 +0.4
732,389 + GFF745 0.29 +0.5
732,393 + GFF745 0.29 -0.2
732,397 - GFF745 0.30 -0.8
732,404 + GFF745 0.31 +0.6
732,450 - GFF745 0.36 +0.8
732,467 - GFF745 0.38 +0.3
732,490 + GFF745 0.41 +0.4
732,490 + GFF745 0.41 -0.5
732,490 + GFF745 0.41 +0.5
732,493 - GFF745 0.42 -1.8
732,498 - GFF745 0.42 -0.2
732,498 - GFF745 0.42 -0.4
732,498 - GFF745 0.42 -0.6
732,498 - GFF745 0.42 +1.1
732,498 - GFF745 0.42 -2.2
732,498 - GFF745 0.42 -0.5
732,544 + GFF745 0.48 -1.9
732,580 - GFF745 0.52 +0.5
732,603 + GFF745 0.55 -0.1
732,621 - GFF745 0.57 -1.2
732,641 + GFF745 0.59 -0.0
732,707 - GFF745 0.67 -1.5
732,712 - GFF745 0.68 +0.6
732,714 + GFF745 0.68 -0.4
732,715 + GFF745 0.68 +0.7
732,722 - GFF745 0.69 -2.7
732,723 - GFF745 0.69 -1.2
732,773 + GFF745 0.75 -1.2
732,792 + GFF745 0.77 -0.1
732,813 - GFF745 0.80 +0.9
732,816 - GFF745 0.80 +0.7
732,829 + GFF745 0.82 -0.1
732,837 - GFF745 0.83 +0.2
732,912 - +0.5
732,923 + +0.3
732,923 + -1.5
732,930 - +0.4
732,931 - +0.5

Or see this region's nucleotide sequence