Strain Fitness in Sphingobium sp. HT1-2 around GFF659

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF658 and GFF659 are separated by 91 nucleotidesGFF659 and GFF660 are separated by 2 nucleotidesGFF660 and GFF661 are separated by 6 nucleotidesGFF661 and GFF662 are separated by 82 nucleotides GFF658 - DinG family ATP-dependent helicase YoaA, at 656,128 to 658,881 GFF658 GFF659 - Phosphohistidine phosphatase SixA, at 658,973 to 659,515 GFF659 GFF660 - Acetyltransferase, GNAT family, at 659,518 to 660,042 GFF660 GFF661 - Transcriptional regulator PA2737, MerR family, at 660,049 to 660,393 GFF661 GFF662 - Integration host factor alpha subunit, at 660,476 to 660,772 GFF662 Position (kb) 658 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 657.975 kb on + strand, within GFF658at 658.042 kb on - strand, within GFF658at 658.042 kb on - strand, within GFF658at 658.066 kb on + strand, within GFF658at 658.068 kb on + strand, within GFF658at 658.068 kb on + strand, within GFF658at 658.074 kb on - strand, within GFF658at 658.076 kb on - strand, within GFF658at 658.083 kb on + strand, within GFF658at 658.083 kb on + strand, within GFF658at 658.083 kb on + strand, within GFF658at 658.091 kb on - strand, within GFF658at 658.091 kb on - strand, within GFF658at 658.107 kb on + strand, within GFF658at 658.107 kb on + strand, within GFF658at 658.107 kb on + strand, within GFF658at 658.107 kb on + strand, within GFF658at 658.113 kb on + strand, within GFF658at 658.115 kb on - strand, within GFF658at 658.121 kb on - strand, within GFF658at 658.128 kb on + strand, within GFF658at 658.141 kb on - strand, within GFF658at 658.159 kb on - strand, within GFF658at 658.159 kb on - strand, within GFF658at 658.162 kb on - strand, within GFF658at 658.172 kb on - strand, within GFF658at 658.172 kb on - strand, within GFF658at 658.180 kb on - strand, within GFF658at 658.199 kb on - strand, within GFF658at 658.216 kb on - strand, within GFF658at 658.225 kb on - strand, within GFF658at 658.280 kb on + strand, within GFF658at 658.303 kb on + strand, within GFF658at 658.313 kb on + strand, within GFF658at 658.317 kb on + strand, within GFF658at 658.321 kb on - strand, within GFF658at 658.349 kb on - strand, within GFF658at 658.364 kb on + strand, within GFF658at 658.364 kb on + strand, within GFF658at 658.372 kb on - strand, within GFF658at 658.400 kb on + strand, within GFF658at 658.408 kb on - strand, within GFF658at 658.437 kb on + strand, within GFF658at 658.473 kb on + strand, within GFF658at 658.473 kb on + strand, within GFF658at 658.473 kb on + strand, within GFF658at 658.474 kb on - strand, within GFF658at 658.478 kb on + strand, within GFF658at 658.481 kb on + strand, within GFF658at 658.481 kb on - strand, within GFF658at 658.489 kb on - strand, within GFF658at 658.489 kb on - strand, within GFF658at 658.489 kb on - strand, within GFF658at 658.491 kb on + strand, within GFF658at 658.491 kb on + strand, within GFF658at 658.494 kb on + strand, within GFF658at 658.499 kb on + strand, within GFF658at 658.507 kb on + strand, within GFF658at 658.507 kb on - strand, within GFF658at 658.515 kb on - strand, within GFF658at 658.544 kb on - strand, within GFF658at 658.548 kb on + strand, within GFF658at 658.551 kb on - strand, within GFF658at 658.551 kb on - strand, within GFF658at 658.553 kb on + strand, within GFF658at 658.553 kb on + strand, within GFF658at 658.553 kb on + strand, within GFF658at 658.553 kb on + strand, within GFF658at 658.557 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.561 kb on - strand, within GFF658at 658.607 kb on + strandat 658.609 kb on + strandat 658.614 kb on - strandat 658.667 kb on - strandat 658.670 kb on + strandat 658.693 kb on + strandat 658.767 kb on + strandat 658.820 kb on + strandat 658.828 kb on - strandat 658.828 kb on - strandat 658.828 kb on - strandat 658.828 kb on - strandat 658.833 kb on - strandat 658.851 kb on - strandat 658.852 kb on - strandat 658.852 kb on - strandat 658.858 kb on - strandat 658.878 kb on - strandat 658.897 kb on - strandat 658.907 kb on - strandat 658.961 kb on + strandat 658.961 kb on + strandat 658.980 kb on + strandat 658.988 kb on + strandat 658.988 kb on - strandat 659.034 kb on + strand, within GFF659at 659.075 kb on + strand, within GFF659at 659.077 kb on + strand, within GFF659at 659.105 kb on + strand, within GFF659at 659.113 kb on - strand, within GFF659at 659.133 kb on + strand, within GFF659at 659.231 kb on + strand, within GFF659at 659.231 kb on + strand, within GFF659at 659.231 kb on + strand, within GFF659at 659.272 kb on + strand, within GFF659at 659.292 kb on - strand, within GFF659at 659.302 kb on - strand, within GFF659at 659.323 kb on - strand, within GFF659at 659.331 kb on - strand, within GFF659at 659.334 kb on + strand, within GFF659at 659.340 kb on - strand, within GFF659at 659.340 kb on - strand, within GFF659at 659.374 kb on - strand, within GFF659at 659.423 kb on - strand, within GFF659at 659.428 kb on - strand, within GFF659at 659.446 kb on + strand, within GFF659at 659.446 kb on + strand, within GFF659at 659.456 kb on + strand, within GFF659at 659.456 kb on + strand, within GFF659at 659.522 kb on - strandat 659.522 kb on - strandat 659.522 kb on - strandat 659.533 kb on - strandat 659.535 kb on - strandat 659.553 kb on - strandat 659.583 kb on - strand, within GFF660at 659.603 kb on + strand, within GFF660at 659.603 kb on + strand, within GFF660at 659.608 kb on + strand, within GFF660at 659.608 kb on + strand, within GFF660at 659.626 kb on - strand, within GFF660at 659.665 kb on + strand, within GFF660at 659.667 kb on + strand, within GFF660at 659.667 kb on + strand, within GFF660at 659.704 kb on + strand, within GFF660at 659.708 kb on - strand, within GFF660at 659.712 kb on - strand, within GFF660at 659.730 kb on - strand, within GFF660at 659.734 kb on + strand, within GFF660at 659.739 kb on + strand, within GFF660at 659.741 kb on + strand, within GFF660at 659.749 kb on - strand, within GFF660at 659.749 kb on - strand, within GFF660at 659.754 kb on - strand, within GFF660at 659.859 kb on + strand, within GFF660at 659.872 kb on - strand, within GFF660at 659.940 kb on - strand, within GFF660at 659.956 kb on + strand, within GFF660at 659.957 kb on + strand, within GFF660at 659.987 kb on + strand, within GFF660at 660.012 kb on - strandat 660.017 kb on + strandat 660.037 kb on + strandat 660.055 kb on + strandat 660.081 kb on + strandat 660.206 kb on - strand, within GFF661at 660.211 kb on - strand, within GFF661at 660.211 kb on - strand, within GFF661at 660.248 kb on + strand, within GFF661at 660.257 kb on - strand, within GFF661at 660.401 kb on + strandat 660.479 kb on + strandat 660.479 kb on + strandat 660.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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657,975 + GFF658 0.67 -0.7
658,042 - GFF658 0.69 -1.2
658,042 - GFF658 0.69 -1.8
658,066 + GFF658 0.70 -0.3
658,068 + GFF658 0.70 -0.1
658,068 + GFF658 0.70 -0.6
658,074 - GFF658 0.71 +0.5
658,076 - GFF658 0.71 +0.5
658,083 + GFF658 0.71 +1.4
658,083 + GFF658 0.71 +1.1
658,083 + GFF658 0.71 -1.3
658,091 - GFF658 0.71 -2.0
658,091 - GFF658 0.71 -1.0
658,107 + GFF658 0.72 +0.6
658,107 + GFF658 0.72 -1.0
658,107 + GFF658 0.72 -0.8
658,107 + GFF658 0.72 +0.9
658,113 + GFF658 0.72 +0.7
658,115 - GFF658 0.72 -0.8
658,121 - GFF658 0.72 +0.6
658,128 + GFF658 0.73 +0.6
658,141 - GFF658 0.73 +0.9
658,159 - GFF658 0.74 +1.1
658,159 - GFF658 0.74 +0.2
658,162 - GFF658 0.74 +0.5
658,172 - GFF658 0.74 +1.4
658,172 - GFF658 0.74 -0.6
658,180 - GFF658 0.75 -1.6
658,199 - GFF658 0.75 -0.6
658,216 - GFF658 0.76 -1.0
658,225 - GFF658 0.76 +0.1
658,280 + GFF658 0.78 +0.2
658,303 + GFF658 0.79 +0.3
658,313 + GFF658 0.79 -0.4
658,317 + GFF658 0.79 -0.1
658,321 - GFF658 0.80 -0.4
658,349 - GFF658 0.81 -0.3
658,364 + GFF658 0.81 -2.0
658,364 + GFF658 0.81 +0.2
658,372 - GFF658 0.81 +0.1
658,400 + GFF658 0.82 -0.3
658,408 - GFF658 0.83 +0.2
658,437 + GFF658 0.84 -0.3
658,473 + GFF658 0.85 +0.0
658,473 + GFF658 0.85 -0.7
658,473 + GFF658 0.85 -0.1
658,474 - GFF658 0.85 +0.5
658,478 + GFF658 0.85 -1.6
658,481 + GFF658 0.85 +1.9
658,481 - GFF658 0.85 +0.5
658,489 - GFF658 0.86 +1.6
658,489 - GFF658 0.86 -0.4
658,489 - GFF658 0.86 +0.8
658,491 + GFF658 0.86 +0.0
658,491 + GFF658 0.86 -1.0
658,494 + GFF658 0.86 +0.4
658,499 + GFF658 0.86 -0.6
658,507 + GFF658 0.86 +2.5
658,507 - GFF658 0.86 -0.1
658,515 - GFF658 0.87 -0.1
658,544 - GFF658 0.88 -2.0
658,548 + GFF658 0.88 +0.2
658,551 - GFF658 0.88 +0.6
658,551 - GFF658 0.88 -0.3
658,553 + GFF658 0.88 -0.5
658,553 + GFF658 0.88 -0.5
658,553 + GFF658 0.88 -0.2
658,553 + GFF658 0.88 +0.8
658,557 - GFF658 0.88 +1.4
658,561 - GFF658 0.88 +0.1
658,561 - GFF658 0.88 +0.5
658,561 - GFF658 0.88 +0.3
658,561 - GFF658 0.88 -0.1
658,561 - GFF658 0.88 +0.3
658,561 - GFF658 0.88 +0.9
658,561 - GFF658 0.88 +0.2
658,561 - GFF658 0.88 +0.1
658,561 - GFF658 0.88 +0.3
658,561 - GFF658 0.88 -1.2
658,607 + -0.0
658,609 + -1.5
658,614 - -1.1
658,667 - +0.0
658,670 + -0.7
658,693 + -0.4
658,767 + +0.1
658,820 + -0.8
658,828 - -1.0
658,828 - +0.6
658,828 - +0.4
658,828 - +0.2
658,833 - -1.5
658,851 - -2.5
658,852 - -0.2
658,852 - +0.0
658,858 - +0.2
658,878 - +1.4
658,897 - -1.1
658,907 - -0.6
658,961 + +0.4
658,961 + -0.7
658,980 + -2.2
658,988 + -0.5
658,988 - +0.2
659,034 + GFF659 0.11 -1.0
659,075 + GFF659 0.19 -2.0
659,077 + GFF659 0.19 -0.5
659,105 + GFF659 0.24 -0.5
659,113 - GFF659 0.26 -2.1
659,133 + GFF659 0.29 +0.9
659,231 + GFF659 0.48 -0.7
659,231 + GFF659 0.48 -1.2
659,231 + GFF659 0.48 -0.2
659,272 + GFF659 0.55 -3.0
659,292 - GFF659 0.59 -0.8
659,302 - GFF659 0.61 -1.3
659,323 - GFF659 0.64 +0.2
659,331 - GFF659 0.66 -1.0
659,334 + GFF659 0.66 -1.1
659,340 - GFF659 0.68 -0.7
659,340 - GFF659 0.68 -0.9
659,374 - GFF659 0.74 -2.0
659,423 - GFF659 0.83 -1.0
659,428 - GFF659 0.84 -1.4
659,446 + GFF659 0.87 -0.3
659,446 + GFF659 0.87 -1.4
659,456 + GFF659 0.89 -0.2
659,456 + GFF659 0.89 -1.0
659,522 - +0.0
659,522 - +0.7
659,522 - -0.2
659,533 - +0.8
659,535 - +0.3
659,553 - -1.0
659,583 - GFF660 0.12 +0.4
659,603 + GFF660 0.16 -0.3
659,603 + GFF660 0.16 -1.2
659,608 + GFF660 0.17 +0.5
659,608 + GFF660 0.17 +1.2
659,626 - GFF660 0.21 +0.2
659,665 + GFF660 0.28 -0.9
659,667 + GFF660 0.28 -0.4
659,667 + GFF660 0.28 +0.2
659,704 + GFF660 0.35 -0.5
659,708 - GFF660 0.36 +1.5
659,712 - GFF660 0.37 +1.0
659,730 - GFF660 0.40 +0.2
659,734 + GFF660 0.41 -0.2
659,739 + GFF660 0.42 +1.9
659,741 + GFF660 0.42 +0.0
659,749 - GFF660 0.44 -2.0
659,749 - GFF660 0.44 -0.1
659,754 - GFF660 0.45 -1.0
659,859 + GFF660 0.65 +0.0
659,872 - GFF660 0.67 +0.3
659,940 - GFF660 0.80 +0.5
659,956 + GFF660 0.83 +0.6
659,957 + GFF660 0.84 -1.4
659,987 + GFF660 0.89 +1.0
660,012 - +1.8
660,017 + -1.0
660,037 + -1.5
660,055 + -0.6
660,081 + -0.1
660,206 - GFF661 0.46 -0.4
660,211 - GFF661 0.47 -0.5
660,211 - GFF661 0.47 -0.5
660,248 + GFF661 0.58 -0.5
660,257 - GFF661 0.60 +0.2
660,401 + -1.3
660,479 + -0.3
660,479 + +0.4
660,484 + -0.2

Or see this region's nucleotide sequence