Strain Fitness in Sphingobium sp. HT1-2 around GFF638

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF637 and GFF638 are separated by 12 nucleotidesGFF638 and GFF639 are separated by 39 nucleotides GFF637 - hypothetical protein, at 634,011 to 635,756 GFF637 GFF638 - hypothetical protein, at 635,769 to 635,882 GFF638 GFF639 - Catalase KatE (EC 1.11.1.6), at 635,922 to 637,421 GFF639 Position (kb) 635 636Strain fitness (log2 ratio) -2 -1 0 1 2at 634.769 kb on - strand, within GFF637at 634.802 kb on - strand, within GFF637at 634.802 kb on - strand, within GFF637at 634.825 kb on - strand, within GFF637at 634.859 kb on - strand, within GFF637at 634.861 kb on - strand, within GFF637at 634.954 kb on - strand, within GFF637at 635.021 kb on + strand, within GFF637at 635.021 kb on + strand, within GFF637at 635.021 kb on + strand, within GFF637at 635.021 kb on + strand, within GFF637at 635.021 kb on + strand, within GFF637at 635.021 kb on + strand, within GFF637at 635.021 kb on + strand, within GFF637at 635.029 kb on - strand, within GFF637at 635.029 kb on - strand, within GFF637at 635.040 kb on - strand, within GFF637at 635.084 kb on + strand, within GFF637at 635.096 kb on - strand, within GFF637at 635.109 kb on + strand, within GFF637at 635.183 kb on + strand, within GFF637at 635.191 kb on - strand, within GFF637at 635.191 kb on - strand, within GFF637at 635.191 kb on - strand, within GFF637at 635.295 kb on - strand, within GFF637at 635.306 kb on + strand, within GFF637at 635.306 kb on + strand, within GFF637at 635.306 kb on + strand, within GFF637at 635.309 kb on - strand, within GFF637at 635.314 kb on + strand, within GFF637at 635.314 kb on - strand, within GFF637at 635.314 kb on - strand, within GFF637at 635.317 kb on - strand, within GFF637at 635.322 kb on - strand, within GFF637at 635.322 kb on - strand, within GFF637at 635.337 kb on - strand, within GFF637at 635.370 kb on + strand, within GFF637at 635.377 kb on - strand, within GFF637at 635.391 kb on + strand, within GFF637at 635.405 kb on - strand, within GFF637at 635.407 kb on - strand, within GFF637at 635.432 kb on - strand, within GFF637at 635.485 kb on - strand, within GFF637at 635.485 kb on - strand, within GFF637at 635.543 kb on + strand, within GFF637at 635.543 kb on + strand, within GFF637at 635.554 kb on + strand, within GFF637at 635.562 kb on - strand, within GFF637at 635.591 kb on - strandat 635.612 kb on + strandat 635.617 kb on - strandat 635.640 kb on - strandat 635.665 kb on + strandat 635.801 kb on - strand, within GFF638at 636.008 kb on + strandat 636.011 kb on - strandat 636.025 kb on + strandat 636.029 kb on + strandat 636.033 kb on - strandat 636.033 kb on - strandat 636.036 kb on + strandat 636.043 kb on + strandat 636.044 kb on - strandat 636.059 kb on + strandat 636.059 kb on + strandat 636.059 kb on + strandat 636.127 kb on + strand, within GFF639at 636.127 kb on + strand, within GFF639at 636.135 kb on - strand, within GFF639at 636.136 kb on + strand, within GFF639at 636.144 kb on - strand, within GFF639at 636.144 kb on - strand, within GFF639at 636.193 kb on - strand, within GFF639at 636.224 kb on + strand, within GFF639at 636.241 kb on + strand, within GFF639at 636.261 kb on + strand, within GFF639at 636.262 kb on + strand, within GFF639at 636.272 kb on + strand, within GFF639at 636.286 kb on + strand, within GFF639at 636.287 kb on + strand, within GFF639at 636.287 kb on + strand, within GFF639at 636.287 kb on + strand, within GFF639at 636.287 kb on + strand, within GFF639at 636.366 kb on - strand, within GFF639at 636.417 kb on - strand, within GFF639at 636.417 kb on - strand, within GFF639at 636.440 kb on + strand, within GFF639at 636.469 kb on + strand, within GFF639at 636.469 kb on + strand, within GFF639at 636.477 kb on - strand, within GFF639at 636.479 kb on - strand, within GFF639at 636.487 kb on - strand, within GFF639at 636.487 kb on - strand, within GFF639at 636.494 kb on + strand, within GFF639at 636.574 kb on + strand, within GFF639at 636.574 kb on + strand, within GFF639at 636.574 kb on + strand, within GFF639at 636.598 kb on + strand, within GFF639at 636.599 kb on - strand, within GFF639at 636.626 kb on + strand, within GFF639at 636.637 kb on + strand, within GFF639at 636.637 kb on + strand, within GFF639at 636.637 kb on + strand, within GFF639at 636.637 kb on + strand, within GFF639at 636.644 kb on - strand, within GFF639at 636.644 kb on - strand, within GFF639at 636.645 kb on - strand, within GFF639at 636.655 kb on + strand, within GFF639at 636.728 kb on - strand, within GFF639at 636.748 kb on - strand, within GFF639at 636.780 kb on - strand, within GFF639at 636.788 kb on - strand, within GFF639at 636.822 kb on + strand, within GFF639at 636.829 kb on + strand, within GFF639at 636.849 kb on + strand, within GFF639at 636.862 kb on + strand, within GFF639

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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634,769 - GFF637 0.43 -0.5
634,802 - GFF637 0.45 +1.0
634,802 - GFF637 0.45 +0.2
634,825 - GFF637 0.47 -1.0
634,859 - GFF637 0.49 +2.4
634,861 - GFF637 0.49 -0.0
634,954 - GFF637 0.54 -1.0
635,021 + GFF637 0.58 +1.0
635,021 + GFF637 0.58 -0.0
635,021 + GFF637 0.58 +0.0
635,021 + GFF637 0.58 +0.6
635,021 + GFF637 0.58 -1.0
635,021 + GFF637 0.58 +1.6
635,021 + GFF637 0.58 -2.0
635,029 - GFF637 0.58 +1.7
635,029 - GFF637 0.58 -0.6
635,040 - GFF637 0.59 -0.1
635,084 + GFF637 0.61 -0.2
635,096 - GFF637 0.62 +0.4
635,109 + GFF637 0.63 +0.4
635,183 + GFF637 0.67 +0.3
635,191 - GFF637 0.68 -1.2
635,191 - GFF637 0.68 -0.1
635,191 - GFF637 0.68 -1.2
635,295 - GFF637 0.74 +0.7
635,306 + GFF637 0.74 +0.8
635,306 + GFF637 0.74 +0.5
635,306 + GFF637 0.74 +0.1
635,309 - GFF637 0.74 -0.4
635,314 + GFF637 0.75 -1.1
635,314 - GFF637 0.75 -0.5
635,314 - GFF637 0.75 -0.8
635,317 - GFF637 0.75 +0.4
635,322 - GFF637 0.75 +0.2
635,322 - GFF637 0.75 -0.0
635,337 - GFF637 0.76 -2.2
635,370 + GFF637 0.78 -0.1
635,377 - GFF637 0.78 +0.3
635,391 + GFF637 0.79 +0.7
635,405 - GFF637 0.80 -1.4
635,407 - GFF637 0.80 +0.1
635,432 - GFF637 0.81 -1.0
635,485 - GFF637 0.84 +0.3
635,485 - GFF637 0.84 -0.0
635,543 + GFF637 0.88 -1.5
635,543 + GFF637 0.88 +1.4
635,554 + GFF637 0.88 +0.4
635,562 - GFF637 0.89 +1.2
635,591 - +0.0
635,612 + +0.2
635,617 - -0.4
635,640 - -0.3
635,665 + -0.1
635,801 - GFF638 0.28 -1.3
636,008 + +0.7
636,011 - +0.7
636,025 + -0.7
636,029 + -1.0
636,033 - -0.3
636,033 - -1.2
636,036 + +1.0
636,043 + -0.5
636,044 - +0.0
636,059 + -0.5
636,059 + +1.4
636,059 + -0.4
636,127 + GFF639 0.14 +0.3
636,127 + GFF639 0.14 +1.0
636,135 - GFF639 0.14 -1.2
636,136 + GFF639 0.14 +1.0
636,144 - GFF639 0.15 -0.6
636,144 - GFF639 0.15 -0.4
636,193 - GFF639 0.18 +0.5
636,224 + GFF639 0.20 -0.4
636,241 + GFF639 0.21 +0.3
636,261 + GFF639 0.23 -0.2
636,262 + GFF639 0.23 -0.6
636,272 + GFF639 0.23 +0.1
636,286 + GFF639 0.24 -0.6
636,287 + GFF639 0.24 +0.3
636,287 + GFF639 0.24 +1.0
636,287 + GFF639 0.24 -1.2
636,287 + GFF639 0.24 -1.6
636,366 - GFF639 0.30 +1.0
636,417 - GFF639 0.33 +0.0
636,417 - GFF639 0.33 -0.6
636,440 + GFF639 0.35 +0.3
636,469 + GFF639 0.36 +1.1
636,469 + GFF639 0.36 +0.3
636,477 - GFF639 0.37 -0.7
636,479 - GFF639 0.37 -0.2
636,487 - GFF639 0.38 -1.9
636,487 - GFF639 0.38 +1.2
636,494 + GFF639 0.38 +0.4
636,574 + GFF639 0.43 +0.9
636,574 + GFF639 0.43 +0.3
636,574 + GFF639 0.43 +0.3
636,598 + GFF639 0.45 +0.1
636,599 - GFF639 0.45 -0.0
636,626 + GFF639 0.47 -0.8
636,637 + GFF639 0.48 +1.0
636,637 + GFF639 0.48 -0.2
636,637 + GFF639 0.48 +1.2
636,637 + GFF639 0.48 +0.5
636,644 - GFF639 0.48 +0.7
636,644 - GFF639 0.48 -0.1
636,645 - GFF639 0.48 +1.2
636,655 + GFF639 0.49 +0.5
636,728 - GFF639 0.54 +0.2
636,748 - GFF639 0.55 -0.6
636,780 - GFF639 0.57 -0.4
636,788 - GFF639 0.58 +0.2
636,822 + GFF639 0.60 -1.8
636,829 + GFF639 0.60 +0.4
636,849 + GFF639 0.62 +0.6
636,862 + GFF639 0.63 -0.3

Or see this region's nucleotide sequence