Strain Fitness in Sphingobium sp. HT1-2 around GFF5412

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,385,178	+		GFF5410	0.69	-0.0
5,385,192	-		GFF5410	0.70	-0.0
5,385,198	-		GFF5410	0.71	-0.2
5,385,200	+		GFF5410	0.71	+0.7
5,385,205	+		GFF5410	0.72	+0.3
5,385,364	+		GFF5410	0.89	-0.1
5,385,436	+				-1.2
5,385,456	-				-1.8
5,385,456	-				-0.7
5,385,456	-				-0.4
5,386,005	-				-0.6
5,386,093	+				-0.8
5,386,204	+				+0.8
5,386,207	-				+0.7
5,386,207	-				-1.5
5,386,213	-				-0.5
5,386,235	-				-1.3
5,386,274	+		GFF5412	0.10	-1.6
5,386,301	+		GFF5412	0.13	-0.2
5,386,304	-		GFF5412	0.13	-0.6
5,386,309	-		GFF5412	0.14	+0.1
5,386,320	-		GFF5412	0.15	-0.6
5,386,332	+		GFF5412	0.16	+1.2
5,386,337	+		GFF5412	0.17	-0.6
5,386,340	-		GFF5412	0.17	+0.7
5,386,378	+		GFF5412	0.21	+0.7
5,386,386	-		GFF5412	0.21	+1.2
5,386,393	-		GFF5412	0.22	-0.9
5,386,394	+		GFF5412	0.22	-1.0
5,386,394	+		GFF5412	0.22	+0.5
5,386,394	+		GFF5412	0.22	-0.1
5,386,394	+		GFF5412	0.22	+0.2
5,386,394	+		GFF5412	0.22	-1.1
5,386,394	+		GFF5412	0.22	+1.2
5,386,399	+		GFF5412	0.23	-1.1
5,386,399	+		GFF5412	0.23	-0.8
5,386,399	+		GFF5412	0.23	-0.9
5,386,402	-		GFF5412	0.23	-0.0
5,386,402	-		GFF5412	0.23	+0.6
5,386,412	+		GFF5412	0.24	-0.9
5,386,412	+		GFF5412	0.24	-1.8
5,386,415	-		GFF5412	0.24	-0.1
5,386,420	-		GFF5412	0.25	+0.8
5,386,444	-		GFF5412	0.27	-0.6
5,386,456	+		GFF5412	0.28	-1.4
5,386,464	-		GFF5412	0.29	-0.7
5,386,473	+		GFF5412	0.30	-0.0
5,386,500	-		GFF5412	0.33	-0.6
5,386,514	-		GFF5412	0.34	+1.6
5,386,515	-		GFF5412	0.34	-2.0
5,386,528	+		GFF5412	0.36	-1.8
5,386,528	+		GFF5412	0.36	-1.0
5,386,532	+		GFF5412	0.36	+0.3
5,386,554	+		GFF5412	0.38	-0.8
5,386,554	+		GFF5412	0.38	-0.6
5,386,599	-		GFF5412	0.43	-0.2
5,386,599	-		GFF5412	0.43	-0.5
5,386,604	-		GFF5412	0.43	+0.3
5,386,606	+		GFF5412	0.43	-1.3
5,386,623	+		GFF5412	0.45	-0.6
5,386,655	+		GFF5412	0.48	-2.7
5,386,659	+		GFF5412	0.48	-0.2
5,386,659	+		GFF5412	0.48	-1.4
5,386,669	+		GFF5412	0.49	-1.4
5,386,674	+		GFF5412	0.50	-0.1
5,386,743	-		GFF5412	0.57	+0.1
5,386,743	-		GFF5412	0.57	+0.1
5,386,746	+		GFF5412	0.57	-0.8
5,386,746	+		GFF5412	0.57	+0.7
5,386,746	+		GFF5412	0.57	-2.5
5,386,746	+		GFF5412	0.57	-0.2
5,386,746	+		GFF5412	0.57	+1.5
5,386,746	+		GFF5412	0.57	-0.8
5,386,746	+		GFF5412	0.57	-0.8
5,386,754	-		GFF5412	0.58	-0.0
5,386,754	-		GFF5412	0.58	+0.4
5,386,754	-		GFF5412	0.58	+1.2
5,386,754	-		GFF5412	0.58	-1.6
5,386,754	-		GFF5412	0.58	+1.0
5,386,754	-		GFF5412	0.58	-0.2
5,386,754	-		GFF5412	0.58	-0.6
5,386,754	-		GFF5412	0.58	-0.3
5,386,754	-		GFF5412	0.58	+0.5
5,386,754	-		GFF5412	0.58	+0.1
5,386,754	-		GFF5412	0.58	-0.4
5,386,754	-		GFF5412	0.58	-0.8
5,386,754	-		GFF5412	0.58	-1.4
5,386,754	-		GFF5412	0.58	-0.9
5,386,756	+		GFF5412	0.58	-1.7
5,386,762	-		GFF5412	0.59	-1.8
5,386,764	-		GFF5412	0.59	-0.8
5,386,769	-		GFF5412	0.59	-1.3
5,386,810	-		GFF5412	0.63	+0.6
5,386,811	+		GFF5412	0.63	+1.0
5,386,819	-		GFF5412	0.64	-0.3
5,386,819	-		GFF5412	0.64	+0.0
5,386,830	+		GFF5412	0.65	+0.5
5,386,835	+		GFF5412	0.66	+1.7
5,386,835	+		GFF5412	0.66	+0.2
5,386,835	+		GFF5412	0.66	+1.0
5,386,835	+		GFF5412	0.66	-0.1
5,386,835	+		GFF5412	0.66	-1.2
5,386,838	-		GFF5412	0.66	+0.3
5,386,843	-		GFF5412	0.67	-1.0
5,386,855	+		GFF5412	0.68	-2.8
5,386,952	+		GFF5412	0.77	-0.0
5,386,960	+		GFF5412	0.78	-0.6
5,386,968	-		GFF5412	0.79	-0.2
5,386,968	-		GFF5412	0.79	-0.8
5,387,002	+		GFF5412	0.82	-0.9
5,387,010	-		GFF5412	0.83	+1.2
5,387,010	-		GFF5412	0.83	-1.1
5,387,034	+		GFF5412	0.85	+0.3
5,387,042	-		GFF5412	0.86	-0.1
5,387,061	-		GFF5412	0.88	-1.9
5,387,109	+				-1.6
5,387,110	-				-0.3
5,387,117	-				-2.0
5,387,117	-				+0.2
5,387,117	-				-0.2
5,387,119	+				-1.3
5,387,139	-				-0.8
5,387,162	-				-0.3
5,387,169	-				-1.2
5,387,174	+				-1.7
5,387,174	-				-0.4
5,387,177	+				-2.1
5,387,202	+				-0.2
5,387,210	-				-1.2
5,387,210	-				-0.6
5,387,210	-				-0.6
5,387,210	-				+0.1
5,387,210	-				-0.9
5,387,210	-				-0.3
5,387,226	+				+0.2
5,387,234	-				+0.3
5,387,234	-				-0.3
5,387,244	+				-0.9
5,387,245	-				-0.1
5,387,249	+				+0.2
5,387,249	+				-0.3
5,387,249	+				+0.2
5,387,249	+				+0.6
5,387,257	-				-1.5
5,387,257	-				-0.0
5,387,257	-				+0.1
5,387,257	-				-1.1
5,387,257	-				+0.3
5,387,257	-				-1.1
5,387,257	-				+0.7
5,387,257	-				+0.7
5,387,257	-				+0.2
5,387,257	-				+0.7
5,387,257	-				-2.0
5,387,257	-				+1.1
5,387,257	-				-0.5
5,387,257	-				+0.5
5,387,260	+				-0.3
5,387,261	+				+1.5
5,387,267	+				+0.0
5,387,269	-				+1.1
5,387,269	-				-1.2
5,387,269	-				-1.1
5,387,275	-				+0.7
5,387,275	-				-1.2
5,387,278	-				+0.7
5,387,304	-				+0.1
5,387,359	+				+0.6
5,387,368	+				+0.4
5,387,369	-				-1.4
5,387,376	-				-1.3
5,387,376	-				-1.1
5,387,424	-		GFF5413	0.11	-1.5
5,387,495	+		GFF5413	0.45	-1.5
5,387,500	-		GFF5413	0.47	-2.1
5,387,500	-		GFF5413	0.47	-2.8
5,387,505	+		GFF5413	0.49	-2.8
5,387,505	+		GFF5413	0.49	-0.8
5,387,505	+		GFF5413	0.49	-2.5
5,387,505	+		GFF5413	0.49	-1.8
5,387,510	+		GFF5413	0.52	-0.0
5,387,513	-		GFF5413	0.53	-0.6
5,387,518	-		GFF5413	0.55	-1.2
5,387,518	-		GFF5413	0.55	-1.6
5,387,531	-		GFF5413	0.62	-3.1
5,387,554	-		GFF5413	0.72	-0.6
5,387,800	-				-0.8
5,387,805	+				-0.4
5,387,811	+				-0.3
5,387,811	+				-0.3
5,387,811	+				-0.3
5,387,811	+				-1.7
5,387,811	+				-1.2
5,387,811	+				-1.5
5,387,811	+				+1.6
5,387,811	+				-0.5
5,387,812	+				-0.7
5,387,812	+				-2.1
5,387,812	+				-0.2
5,387,812	+				-1.5
5,387,812	+				+0.2
5,387,812	+				-1.3
5,387,819	-				+0.3
5,387,819	-				-0.8
5,387,819	-				-0.3
5,387,819	-				-0.1
5,387,819	-				+0.0
5,387,819	-				+0.4
5,387,819	-				-0.7
5,387,820	-				-1.5
5,387,820	-				+0.1
5,387,820	-				+0.6
5,387,820	-				-1.7
5,387,820	-				-0.3
5,387,820	-				+0.1
5,387,820	-				+0.2
5,387,820	-				-1.0
5,387,826	+				+1.0
5,387,826	-				-0.3
5,387,828	+				+1.0
5,387,828	+				-1.0
5,387,828	+				+0.9
5,387,834	-				-0.9
5,387,866	+				-2.5
5,387,891	+		GFF5414	0.14	-1.0
5,387,905	-		GFF5414	0.17	-1.3
5,387,905	-		GFF5414	0.17	-0.3
5,387,928	+		GFF5414	0.22	-0.3
5,387,970	-		GFF5414	0.31	-0.5
5,387,993	+		GFF5414	0.36	-0.2
5,387,993	+		GFF5414	0.36	-1.1
5,387,993	+		GFF5414	0.36	+0.1
5,387,993	+		GFF5414	0.36	+0.4
5,387,993	+		GFF5414	0.36	-1.2
5,387,993	+		GFF5414	0.36	+0.4
5,387,993	+		GFF5414	0.36	-0.4
5,387,993	+		GFF5414	0.36	-1.0
5,387,993	+		GFF5414	0.36	+0.6
5,388,001	-		GFF5414	0.37	+0.8
5,388,001	-		GFF5414	0.37	-0.8
5,388,001	-		GFF5414	0.37	-1.0
5,388,001	-		GFF5414	0.37	+0.1
5,388,001	-		GFF5414	0.37	-1.1
5,388,001	-		GFF5414	0.37	-0.6
5,388,001	-		GFF5414	0.37	-0.4
5,388,001	-		GFF5414	0.37	-0.7
5,388,001	-		GFF5414	0.37	-0.6
5,388,001	-		GFF5414	0.37	+0.6
5,388,001	-		GFF5414	0.37	-0.4
5,388,003	+		GFF5414	0.38	-0.5
5,388,003	+		GFF5414	0.38	-1.7
5,388,003	+		GFF5414	0.38	+0.5
5,388,003	+		GFF5414	0.38	+1.1
5,388,003	+		GFF5414	0.38	+0.5
5,388,011	-		GFF5414	0.39	-1.0
5,388,011	-		GFF5414	0.39	+0.3
5,388,060	+		GFF5414	0.49	-1.0
5,388,120	+		GFF5414	0.62	-2.5
5,388,125	+		GFF5414	0.63	-0.6
5,388,125	+		GFF5414	0.63	-3.1
5,388,135	+		GFF5414	0.65	-0.3
5,388,152	-		GFF5414	0.69	-0.0
5,388,159	+		GFF5414	0.70	+0.6
5,388,159	+		GFF5414	0.70	-0.9
5,388,167	+		GFF5414	0.72	+0.5
5,388,169	+		GFF5414	0.72	-1.0
5,388,169	+		GFF5414	0.72	-1.1
5,388,169	+		GFF5414	0.72	-0.5
5,388,170	-		GFF5414	0.72	+0.6