Strain Fitness in Sphingobium sp. HT1-2 around GFF5331

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,321,943	+		GFF5329	0.41	-0.2
5,321,945	+		GFF5329	0.41	-0.7
5,321,951	-		GFF5329	0.42	-0.0
5,321,951	-		GFF5329	0.42	+0.1
5,321,955	+		GFF5329	0.42	+0.2
5,321,962	+		GFF5329	0.43	+0.2
5,321,962	+		GFF5329	0.43	+0.0
5,321,962	+		GFF5329	0.43	+0.2
5,321,968	+		GFF5329	0.44	+0.7
5,321,970	-		GFF5329	0.44	-1.0
5,321,970	-		GFF5329	0.44	-0.6
5,321,994	-		GFF5329	0.47	-1.2
5,321,994	-		GFF5329	0.47	-1.4
5,322,007	-		GFF5329	0.48	+1.2
5,322,010	+		GFF5329	0.49	+0.2
5,322,013	+		GFF5329	0.49	+0.7
5,322,013	+		GFF5329	0.49	-1.4
5,322,013	+		GFF5329	0.49	+0.7
5,322,031	+		GFF5329	0.51	-0.1
5,322,093	+		GFF5329	0.58	-1.1
5,322,152	+		GFF5329	0.65	-0.9
5,322,160	-		GFF5329	0.66	+1.6
5,322,160	-		GFF5329	0.66	+0.5
5,322,233	+		GFF5329	0.74	+0.7
5,322,241	-		GFF5329	0.75	-0.8
5,322,241	-		GFF5329	0.75	-0.5
5,322,251	-		GFF5329	0.77	-1.1
5,322,259	-		GFF5329	0.77	-2.3
5,322,275	-		GFF5329	0.79	+0.3
5,322,277	-		GFF5329	0.80	-0.5
5,322,312	-		GFF5329	0.84	-0.5
5,322,317	+		GFF5329	0.84	-0.0
5,322,317	+		GFF5329	0.84	-1.1
5,322,325	-		GFF5329	0.85	-0.9
5,322,356	+		GFF5329	0.89	-0.8
5,322,366	+		GFF5329	0.90	-0.4
5,322,392	+				+0.8
5,322,399	+				-0.0
5,322,399	+				+0.2
5,322,402	-				+1.4
5,322,419	-				-0.8
5,322,476	+				-0.8
5,322,484	-				-0.5
5,322,486	-				-0.6
5,322,499	+				-2.3
5,322,500	+				-0.0
5,322,506	+				-0.5
5,322,508	-				+0.9
5,322,516	+				+0.1
5,322,580	-				+0.8
5,322,580	-				+0.0
5,322,622	-				+1.1
5,322,795	+		GFF5330	0.73	-0.4
5,322,804	+		GFF5330	0.76	+0.2
5,322,812	-		GFF5330	0.79	-1.0
5,322,819	-		GFF5330	0.82	-0.6
5,322,821	+		GFF5330	0.82	-0.3
5,322,821	+		GFF5330	0.82	+0.2
5,322,824	-		GFF5330	0.84	-0.4
5,322,829	-		GFF5330	0.85	-0.4
5,322,836	+		GFF5330	0.88	-0.2
5,322,841	+				-1.6
5,322,849	+				+1.0
5,322,849	+				+1.1
5,322,849	+				+1.3
5,322,849	+				+0.6
5,322,849	+				+1.1
5,322,849	-				+0.4
5,322,854	-				-1.5
5,322,857	-				+0.6
5,322,857	-				+1.2
5,322,857	-				-0.3
5,322,873	+				-1.8
5,322,874	-				+0.9
5,322,881	-				-0.7
5,322,881	-				+0.2
5,322,899	+				-0.1
5,322,907	+				+0.3
5,322,907	+				-1.1
5,322,910	-				-0.8
5,322,914	+				+1.1
5,322,914	+				-2.6
5,322,914	+				-1.4
5,322,914	+				-1.1
5,322,914	+				-1.2
5,322,914	+				-0.8
5,322,914	+				-0.9
5,322,914	+				-0.5
5,322,914	+				+0.9
5,322,914	+				-0.5
5,322,914	+				+0.1
5,322,915	-				-0.3
5,322,915	-				-0.7
5,322,915	-				-0.6
5,322,922	-				+0.3
5,322,922	-				-0.8
5,322,922	-				-0.0
5,322,922	-				-1.6
5,322,922	-				-0.5
5,322,922	-				-0.8
5,322,927	-				-0.8
5,322,937	-				-0.2
5,322,954	-				+0.4
5,323,073	+		GFF5331	0.41	-0.4
5,323,078	+		GFF5331	0.42	-0.6
5,323,080	+		GFF5331	0.43	+0.7
5,323,087	+		GFF5331	0.45	-0.9
5,323,087	+		GFF5331	0.45	-0.1
5,323,116	-		GFF5331	0.54	+0.6
5,323,132	-		GFF5331	0.59	+0.1
5,323,415	-				+0.1
5,323,420	-				-0.8
5,323,431	+				-1.3
5,323,431	+				+0.1
5,323,439	-				-0.0
5,323,439	-				+1.4
5,323,441	+				-0.1
5,323,441	+				-0.5
5,323,441	+				-0.0
5,323,449	-				-1.8
5,323,449	-				+0.2
5,323,449	-				-1.5
5,323,449	-				+0.8
5,323,535	+		GFF5332	0.13	+0.8
5,323,553	-		GFF5332	0.18	-1.1
5,323,558	+		GFF5332	0.19	-1.2
5,323,566	+		GFF5332	0.22	-1.4
5,323,566	-		GFF5332	0.22	+0.6
5,323,566	-		GFF5332	0.22	-1.5
5,323,566	-		GFF5332	0.22	-0.3
5,323,571	+		GFF5332	0.23	-0.8
5,323,574	-		GFF5332	0.24	-2.1
5,323,579	-		GFF5332	0.25	+0.5
5,323,596	-		GFF5332	0.30	-0.0
5,323,613	+		GFF5332	0.35	+0.1
5,323,615	+		GFF5332	0.35	+1.2
5,323,615	+		GFF5332	0.35	-0.5
5,323,621	-		GFF5332	0.37	-1.0
5,323,621	-		GFF5332	0.37	-1.2
5,323,623	-		GFF5332	0.38	-0.4
5,323,628	+		GFF5332	0.39	-1.3
5,323,628	-		GFF5332	0.39	-1.3
5,323,637	+		GFF5332	0.41	-0.4
5,323,645	-		GFF5332	0.44	-1.0
5,323,645	-		GFF5332	0.44	+0.0
5,323,646	-		GFF5332	0.44	-1.2
5,323,647	+		GFF5332	0.44	-3.5
5,323,650	-		GFF5332	0.45	-0.9
5,323,657	+		GFF5332	0.47	-1.5
5,323,665	-		GFF5332	0.49	-0.3
5,323,665	-		GFF5332	0.49	-0.6
5,323,665	-		GFF5332	0.49	-0.3
5,323,665	-		GFF5332	0.49	-0.1
5,323,665	-		GFF5332	0.49	-2.1
5,323,668	-		GFF5332	0.50	-0.7
5,323,668	-		GFF5332	0.50	-0.7
5,323,674	+		GFF5332	0.52	-1.6
5,323,674	+		GFF5332	0.52	-1.3
5,323,679	+		GFF5332	0.53	+0.4
5,323,690	+		GFF5332	0.56	-0.4
5,323,704	+		GFF5332	0.60	-0.0
5,323,704	+		GFF5332	0.60	+0.1
5,323,704	+		GFF5332	0.60	-0.8
5,323,704	+		GFF5332	0.60	-1.6
5,323,712	-		GFF5332	0.62	-2.4
5,323,712	-		GFF5332	0.62	+0.4
5,323,712	-		GFF5332	0.62	-1.4
5,323,712	-		GFF5332	0.62	-1.0
5,323,753	+		GFF5332	0.74	-1.4
5,323,753	+		GFF5332	0.74	-2.3
5,323,753	+		GFF5332	0.74	+0.8
5,323,753	+		GFF5332	0.74	-0.7
5,323,753	+		GFF5332	0.74	-0.1
5,323,755	+		GFF5332	0.74	-1.5
5,323,778	-		GFF5332	0.81	-0.1
5,323,789	+		GFF5332	0.84	-0.8
5,323,789	+		GFF5332	0.84	+0.3
5,323,789	+		GFF5332	0.84	-0.3
5,323,795	-		GFF5332	0.85	-0.3
5,323,797	-		GFF5332	0.86	-1.3
5,323,797	-		GFF5332	0.86	-0.3
5,323,797	-		GFF5332	0.86	+0.2
5,323,803	+		GFF5332	0.88	-0.1
5,323,804	+		GFF5332	0.88	-0.9
5,323,804	+		GFF5332	0.88	-0.2
5,323,804	+		GFF5332	0.88	-1.6
5,323,810	+		GFF5332	0.89	-1.0
5,323,812	-				+0.6
5,323,818	-				-1.8
5,323,837	-				-1.0
5,323,838	-				-0.8
5,323,838	-				-2.5
5,323,838	-				-0.3
5,323,856	-				+0.4
5,323,856	-				-0.3
5,323,857	-				-1.5
5,323,865	+				-1.6
5,323,872	+				-0.5
5,323,884	+				-1.6
5,323,892	-				-0.8
5,323,892	-				-1.9
5,323,907	-				-1.4
5,323,914	-				+0.1
5,323,937	+				+0.5
5,323,939	+				-2.5
5,323,945	-				-0.6
5,323,997	+				-1.3
5,324,005	+				-0.0
5,324,036	-				+0.0
5,324,040	+				-3.2
5,324,040	+				-2.2
5,324,045	+				+0.1
5,324,045	+				-1.8
5,324,048	-				-0.6
5,324,048	-				+0.1
5,324,053	+				-0.7
5,324,053	+				-0.3
5,324,053	-				-1.4
5,324,054	-				-2.0
5,324,061	-				-1.1
5,324,061	-				-0.8
5,324,068	+				-2.5
5,324,076	-				-2.0
5,324,083	-				+0.5
5,324,087	+				-1.3
5,324,115	-		GFF5333	0.11	-0.0
5,324,116	+		GFF5333	0.11	-1.2
5,324,116	+		GFF5333	0.11	-0.7
5,324,117	+		GFF5333	0.11	+0.2
5,324,121	+		GFF5333	0.12	-1.8
5,324,121	+		GFF5333	0.12	-2.0
5,324,141	+		GFF5333	0.16	-1.0
5,324,148	-		GFF5333	0.17	+0.2
5,324,149	+		GFF5333	0.17	+0.5
5,324,151	+		GFF5333	0.18	-0.1
5,324,184	+		GFF5333	0.24	-0.2
5,324,184	+		GFF5333	0.24	-0.7
5,324,189	+		GFF5333	0.25	-2.0
5,324,191	+		GFF5333	0.26	-0.8
5,324,192	-		GFF5333	0.26	-0.3
5,324,192	-		GFF5333	0.26	-1.4
5,324,199	+		GFF5333	0.27	-1.4
5,324,199	+		GFF5333	0.27	+0.5
5,324,199	-		GFF5333	0.27	+0.9
5,324,205	-		GFF5333	0.28	+0.8
5,324,209	+		GFF5333	0.29	-0.8
5,324,211	+		GFF5333	0.30	-1.8
5,324,219	-		GFF5333	0.31	-0.6
5,324,219	-		GFF5333	0.31	-0.8
5,324,219	-		GFF5333	0.31	-0.3
5,324,221	+		GFF5333	0.32	-0.9
5,324,225	+		GFF5333	0.32	-0.5
5,324,225	+		GFF5333	0.32	-1.0
5,324,229	-		GFF5333	0.33	+0.6
5,324,233	-		GFF5333	0.34	+0.4
5,324,233	-		GFF5333	0.34	-0.7
5,324,254	+		GFF5333	0.38	+0.0
5,324,256	+		GFF5333	0.38	-0.7
5,324,258	+		GFF5333	0.39	+0.6