Strain Fitness in Sphingobium sp. HT1-2 around GFF530

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF528 and GFF529 are separated by 5 nucleotidesGFF529 and GFF530 are separated by 38 nucleotidesGFF530 and GFF531 are separated by 14 nucleotides GFF528 - Muconate cycloisomerase (EC 5.5.1.1), at 525,878 to 527,035 GFF528 GFF529 - Muconolactone isomerase (EC 5.3.3.4), at 527,041 to 527,331 GFF529 GFF530 - Catechol 1,2-dioxygenase (EC 1.13.11.1), at 527,370 to 528,296 GFF530 GFF531 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 528,311 to 529,672 GFF531 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2at 526.405 kb on - strand, within GFF528at 526.405 kb on - strand, within GFF528at 526.406 kb on + strand, within GFF528at 526.437 kb on - strand, within GFF528at 526.472 kb on + strand, within GFF528at 526.472 kb on + strand, within GFF528at 526.472 kb on + strand, within GFF528at 526.482 kb on + strand, within GFF528at 526.495 kb on + strand, within GFF528at 526.501 kb on + strand, within GFF528at 526.517 kb on - strand, within GFF528at 526.519 kb on + strand, within GFF528at 526.538 kb on - strand, within GFF528at 526.602 kb on - strand, within GFF528at 526.642 kb on - strand, within GFF528at 526.652 kb on - strand, within GFF528at 526.659 kb on + strand, within GFF528at 526.667 kb on - strand, within GFF528at 526.688 kb on + strand, within GFF528at 526.722 kb on - strand, within GFF528at 526.831 kb on + strand, within GFF528at 526.878 kb on - strand, within GFF528at 526.904 kb on - strand, within GFF528at 526.938 kb on + strandat 526.938 kb on + strandat 526.938 kb on + strandat 526.938 kb on + strandat 526.943 kb on + strandat 526.943 kb on + strandat 526.946 kb on - strandat 526.946 kb on - strandat 526.946 kb on - strandat 526.946 kb on - strandat 526.951 kb on - strandat 526.951 kb on - strandat 526.951 kb on - strandat 526.956 kb on + strandat 526.963 kb on - strandat 526.964 kb on - strandat 526.964 kb on - strandat 526.964 kb on - strandat 526.966 kb on + strandat 526.974 kb on - strandat 527.032 kb on - strandat 527.036 kb on + strandat 527.044 kb on - strandat 527.044 kb on - strandat 527.106 kb on + strand, within GFF529at 527.114 kb on - strand, within GFF529at 527.114 kb on - strand, within GFF529at 527.171 kb on + strand, within GFF529at 527.197 kb on + strand, within GFF529at 527.217 kb on + strand, within GFF529at 527.217 kb on + strand, within GFF529at 527.217 kb on + strand, within GFF529at 527.225 kb on - strand, within GFF529at 527.230 kb on - strand, within GFF529at 527.263 kb on + strand, within GFF529at 527.294 kb on + strand, within GFF529at 527.300 kb on - strand, within GFF529at 527.328 kb on - strandat 527.334 kb on + strandat 527.353 kb on + strandat 527.361 kb on - strandat 527.361 kb on - strandat 527.377 kb on - strandat 527.409 kb on + strandat 527.409 kb on + strandat 527.427 kb on + strandat 527.464 kb on - strand, within GFF530at 527.481 kb on + strand, within GFF530at 527.488 kb on - strand, within GFF530at 527.489 kb on - strand, within GFF530at 527.517 kb on - strand, within GFF530at 527.526 kb on + strand, within GFF530at 527.531 kb on + strand, within GFF530at 527.534 kb on + strand, within GFF530at 527.534 kb on - strand, within GFF530at 527.540 kb on - strand, within GFF530at 527.578 kb on + strand, within GFF530at 527.578 kb on + strand, within GFF530at 527.586 kb on - strand, within GFF530at 527.601 kb on - strand, within GFF530at 527.613 kb on - strand, within GFF530at 527.627 kb on + strand, within GFF530at 527.635 kb on - strand, within GFF530at 527.693 kb on + strand, within GFF530at 527.693 kb on + strand, within GFF530at 527.701 kb on - strand, within GFF530at 527.723 kb on + strand, within GFF530at 527.766 kb on + strand, within GFF530at 527.766 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.768 kb on + strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.776 kb on - strand, within GFF530at 527.817 kb on + strand, within GFF530at 527.825 kb on - strand, within GFF530at 527.830 kb on - strand, within GFF530at 527.831 kb on - strand, within GFF530at 527.859 kb on - strand, within GFF530at 527.877 kb on + strand, within GFF530at 527.883 kb on - strand, within GFF530at 527.883 kb on - strand, within GFF530at 527.930 kb on + strand, within GFF530at 527.932 kb on + strand, within GFF530at 527.938 kb on - strand, within GFF530at 527.944 kb on + strand, within GFF530at 527.945 kb on - strand, within GFF530at 527.965 kb on + strand, within GFF530at 527.978 kb on - strand, within GFF530at 528.007 kb on - strand, within GFF530at 528.007 kb on - strand, within GFF530at 528.099 kb on + strand, within GFF530at 528.152 kb on - strand, within GFF530at 528.170 kb on + strand, within GFF530at 528.170 kb on + strand, within GFF530at 528.178 kb on - strand, within GFF530at 528.178 kb on - strand, within GFF530at 528.178 kb on - strand, within GFF530at 528.178 kb on - strand, within GFF530at 528.178 kb on - strand, within GFF530at 528.178 kb on - strand, within GFF530at 528.216 kb on + strandat 528.258 kb on + strandat 528.268 kb on + strandat 528.308 kb on + strandat 528.308 kb on + strandat 528.318 kb on + strandat 528.343 kb on + strandat 528.351 kb on - strandat 528.364 kb on - strandat 528.401 kb on + strandat 528.459 kb on + strand, within GFF531at 528.494 kb on + strand, within GFF531at 528.512 kb on - strand, within GFF531at 528.547 kb on + strand, within GFF531at 528.547 kb on + strand, within GFF531at 528.553 kb on + strand, within GFF531at 528.555 kb on - strand, within GFF531at 528.555 kb on - strand, within GFF531at 528.555 kb on - strand, within GFF531at 528.575 kb on + strand, within GFF531at 528.575 kb on + strand, within GFF531at 528.583 kb on - strand, within GFF531at 528.583 kb on - strand, within GFF531at 528.583 kb on - strand, within GFF531at 528.597 kb on + strand, within GFF531at 528.648 kb on - strand, within GFF531at 528.685 kb on + strand, within GFF531at 528.706 kb on + strand, within GFF531at 528.749 kb on + strand, within GFF531at 528.749 kb on + strand, within GFF531at 528.757 kb on - strand, within GFF531at 528.757 kb on - strand, within GFF531at 528.775 kb on - strand, within GFF531at 528.804 kb on + strand, within GFF531at 528.841 kb on + strand, within GFF531at 528.842 kb on + strand, within GFF531at 528.848 kb on - strand, within GFF531at 528.855 kb on - strand, within GFF531at 528.885 kb on + strand, within GFF531at 528.887 kb on + strand, within GFF531at 528.889 kb on + strand, within GFF531at 528.901 kb on - strand, within GFF531at 528.910 kb on + strand, within GFF531at 528.976 kb on - strand, within GFF531at 528.978 kb on - strand, within GFF531at 529.001 kb on + strand, within GFF531at 529.001 kb on + strand, within GFF531at 529.009 kb on - strand, within GFF531at 529.021 kb on + strand, within GFF531at 529.021 kb on + strand, within GFF531at 529.021 kb on + strand, within GFF531at 529.026 kb on + strand, within GFF531at 529.029 kb on - strand, within GFF531at 529.034 kb on - strand, within GFF531at 529.034 kb on - strand, within GFF531at 529.062 kb on - strand, within GFF531at 529.076 kb on + strand, within GFF531at 529.094 kb on + strand, within GFF531at 529.095 kb on + strand, within GFF531at 529.095 kb on + strand, within GFF531at 529.095 kb on + strand, within GFF531at 529.095 kb on + strand, within GFF531at 529.095 kb on + strand, within GFF531at 529.095 kb on + strand, within GFF531at 529.095 kb on + strand, within GFF531at 529.103 kb on - strand, within GFF531at 529.103 kb on - strand, within GFF531at 529.103 kb on - strand, within GFF531at 529.103 kb on - strand, within GFF531at 529.103 kb on - strand, within GFF531at 529.103 kb on - strand, within GFF531at 529.105 kb on + strand, within GFF531at 529.105 kb on + strand, within GFF531at 529.105 kb on + strand, within GFF531at 529.113 kb on - strand, within GFF531at 529.113 kb on - strand, within GFF531at 529.113 kb on - strand, within GFF531at 529.118 kb on + strand, within GFF531at 529.126 kb on - strand, within GFF531at 529.126 kb on - strand, within GFF531at 529.127 kb on + strand, within GFF531at 529.133 kb on - strand, within GFF531at 529.160 kb on - strand, within GFF531at 529.178 kb on + strand, within GFF531at 529.181 kb on - strand, within GFF531at 529.187 kb on - strand, within GFF531at 529.192 kb on - strand, within GFF531at 529.200 kb on + strand, within GFF531at 529.200 kb on + strand, within GFF531at 529.230 kb on + strand, within GFF531at 529.230 kb on + strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.238 kb on - strand, within GFF531at 529.239 kb on - strand, within GFF531at 529.262 kb on + strand, within GFF531at 529.275 kb on + strand, within GFF531at 529.286 kb on + strand, within GFF531

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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526,405 - GFF528 0.46 +0.3
526,405 - GFF528 0.46 +1.3
526,406 + GFF528 0.46 +0.7
526,437 - GFF528 0.48 -1.0
526,472 + GFF528 0.51 -0.3
526,472 + GFF528 0.51 -0.4
526,472 + GFF528 0.51 +0.9
526,482 + GFF528 0.52 -2.4
526,495 + GFF528 0.53 -0.6
526,501 + GFF528 0.54 -0.7
526,517 - GFF528 0.55 +0.8
526,519 + GFF528 0.55 +1.9
526,538 - GFF528 0.57 -0.8
526,602 - GFF528 0.63 -1.8
526,642 - GFF528 0.66 +0.4
526,652 - GFF528 0.67 -0.2
526,659 + GFF528 0.67 -1.4
526,667 - GFF528 0.68 +1.1
526,688 + GFF528 0.70 -0.3
526,722 - GFF528 0.73 +1.0
526,831 + GFF528 0.82 -1.4
526,878 - GFF528 0.86 +0.8
526,904 - GFF528 0.89 -0.3
526,938 + -1.1
526,938 + +1.4
526,938 + +0.6
526,938 + +0.4
526,943 + -2.2
526,943 + -1.6
526,946 - +0.3
526,946 - +0.2
526,946 - -0.7
526,946 - +0.8
526,951 - +0.5
526,951 - -1.0
526,951 - +1.4
526,956 + -2.4
526,963 - -1.4
526,964 - -0.7
526,964 - +0.3
526,964 - +1.9
526,966 + -1.4
526,974 - +2.0
527,032 - -0.2
527,036 + -1.3
527,044 - -0.4
527,044 - -0.5
527,106 + GFF529 0.22 +1.1
527,114 - GFF529 0.25 -1.0
527,114 - GFF529 0.25 -0.8
527,171 + GFF529 0.45 -1.5
527,197 + GFF529 0.54 -0.7
527,217 + GFF529 0.60 -0.5
527,217 + GFF529 0.60 +1.4
527,217 + GFF529 0.60 +0.3
527,225 - GFF529 0.63 +0.3
527,230 - GFF529 0.65 -0.1
527,263 + GFF529 0.76 -0.8
527,294 + GFF529 0.87 +0.1
527,300 - GFF529 0.89 -0.6
527,328 - -1.3
527,334 + +1.0
527,353 + -1.3
527,361 - -0.7
527,361 - -0.3
527,377 - +0.9
527,409 + +0.6
527,409 + -0.6
527,427 + -0.2
527,464 - GFF530 0.10 -1.7
527,481 + GFF530 0.12 -0.6
527,488 - GFF530 0.13 +0.1
527,489 - GFF530 0.13 +0.1
527,517 - GFF530 0.16 -1.5
527,526 + GFF530 0.17 -0.7
527,531 + GFF530 0.17 +0.6
527,534 + GFF530 0.18 +0.6
527,534 - GFF530 0.18 -0.3
527,540 - GFF530 0.18 -1.6
527,578 + GFF530 0.22 +0.1
527,578 + GFF530 0.22 +2.5
527,586 - GFF530 0.23 -0.9
527,601 - GFF530 0.25 -1.5
527,613 - GFF530 0.26 -0.5
527,627 + GFF530 0.28 -0.6
527,635 - GFF530 0.29 +0.2
527,693 + GFF530 0.35 +0.2
527,693 + GFF530 0.35 +0.3
527,701 - GFF530 0.36 +1.2
527,723 + GFF530 0.38 +1.1
527,766 + GFF530 0.43 -1.5
527,766 + GFF530 0.43 -0.8
527,768 + GFF530 0.43 -0.6
527,768 + GFF530 0.43 -0.5
527,768 + GFF530 0.43 -0.6
527,768 + GFF530 0.43 +1.1
527,776 - GFF530 0.44 +0.5
527,776 - GFF530 0.44 +0.4
527,776 - GFF530 0.44 -0.1
527,776 - GFF530 0.44 -1.1
527,817 + GFF530 0.48 -0.5
527,825 - GFF530 0.49 -0.6
527,830 - GFF530 0.50 +0.7
527,831 - GFF530 0.50 +0.8
527,859 - GFF530 0.53 -0.3
527,877 + GFF530 0.55 +0.7
527,883 - GFF530 0.55 +0.6
527,883 - GFF530 0.55 -0.6
527,930 + GFF530 0.60 +0.5
527,932 + GFF530 0.61 +1.0
527,938 - GFF530 0.61 -0.9
527,944 + GFF530 0.62 -1.8
527,945 - GFF530 0.62 -0.3
527,965 + GFF530 0.64 +0.2
527,978 - GFF530 0.66 -1.2
528,007 - GFF530 0.69 +0.1
528,007 - GFF530 0.69 -1.6
528,099 + GFF530 0.79 +0.3
528,152 - GFF530 0.84 -0.5
528,170 + GFF530 0.86 -0.5
528,170 + GFF530 0.86 +0.5
528,178 - GFF530 0.87 -0.2
528,178 - GFF530 0.87 -1.2
528,178 - GFF530 0.87 +0.8
528,178 - GFF530 0.87 -1.2
528,178 - GFF530 0.87 +1.1
528,178 - GFF530 0.87 +1.3
528,216 + -1.5
528,258 + -0.0
528,268 + +0.2
528,308 + -0.1
528,308 + +1.0
528,318 + +0.5
528,343 + -1.3
528,351 - -0.3
528,364 - +1.0
528,401 + +0.7
528,459 + GFF531 0.11 +0.7
528,494 + GFF531 0.13 -0.3
528,512 - GFF531 0.15 +0.4
528,547 + GFF531 0.17 -0.1
528,547 + GFF531 0.17 +0.2
528,553 + GFF531 0.18 +0.5
528,555 - GFF531 0.18 -0.3
528,555 - GFF531 0.18 +0.4
528,555 - GFF531 0.18 +0.6
528,575 + GFF531 0.19 -0.6
528,575 + GFF531 0.19 +0.2
528,583 - GFF531 0.20 +0.8
528,583 - GFF531 0.20 -0.0
528,583 - GFF531 0.20 -2.3
528,597 + GFF531 0.21 -0.3
528,648 - GFF531 0.25 +0.4
528,685 + GFF531 0.27 +0.2
528,706 + GFF531 0.29 +0.1
528,749 + GFF531 0.32 +0.1
528,749 + GFF531 0.32 -1.1
528,757 - GFF531 0.33 +0.5
528,757 - GFF531 0.33 -0.7
528,775 - GFF531 0.34 -2.3
528,804 + GFF531 0.36 +1.4
528,841 + GFF531 0.39 -0.4
528,842 + GFF531 0.39 -1.1
528,848 - GFF531 0.39 -0.7
528,855 - GFF531 0.40 -0.8
528,885 + GFF531 0.42 -0.2
528,887 + GFF531 0.42 +0.3
528,889 + GFF531 0.42 +0.6
528,901 - GFF531 0.43 +0.4
528,910 + GFF531 0.44 +0.2
528,976 - GFF531 0.49 -0.3
528,978 - GFF531 0.49 -0.9
529,001 + GFF531 0.51 -0.5
529,001 + GFF531 0.51 +0.9
529,009 - GFF531 0.51 -0.2
529,021 + GFF531 0.52 -2.2
529,021 + GFF531 0.52 -0.7
529,021 + GFF531 0.52 -1.3
529,026 + GFF531 0.52 +0.6
529,029 - GFF531 0.53 -1.7
529,034 - GFF531 0.53 +0.3
529,034 - GFF531 0.53 -1.7
529,062 - GFF531 0.55 +1.0
529,076 + GFF531 0.56 +1.2
529,094 + GFF531 0.57 -0.3
529,095 + GFF531 0.58 -0.2
529,095 + GFF531 0.58 +1.2
529,095 + GFF531 0.58 +1.2
529,095 + GFF531 0.58 +0.9
529,095 + GFF531 0.58 -1.5
529,095 + GFF531 0.58 -2.4
529,095 + GFF531 0.58 +0.1
529,103 - GFF531 0.58 -0.1
529,103 - GFF531 0.58 -0.5
529,103 - GFF531 0.58 -0.0
529,103 - GFF531 0.58 +0.8
529,103 - GFF531 0.58 +0.3
529,103 - GFF531 0.58 +2.4
529,105 + GFF531 0.58 +0.7
529,105 + GFF531 0.58 -0.8
529,105 + GFF531 0.58 +0.2
529,113 - GFF531 0.59 -0.4
529,113 - GFF531 0.59 +0.6
529,113 - GFF531 0.59 +1.0
529,118 + GFF531 0.59 +1.3
529,126 - GFF531 0.60 -1.7
529,126 - GFF531 0.60 -0.9
529,127 + GFF531 0.60 +0.8
529,133 - GFF531 0.60 -1.5
529,160 - GFF531 0.62 -1.0
529,178 + GFF531 0.64 -1.8
529,181 - GFF531 0.64 +0.4
529,187 - GFF531 0.64 +1.2
529,192 - GFF531 0.65 -0.0
529,200 + GFF531 0.65 -0.3
529,200 + GFF531 0.65 +0.1
529,230 + GFF531 0.67 -0.4
529,230 + GFF531 0.67 +0.2
529,238 - GFF531 0.68 -0.6
529,238 - GFF531 0.68 +0.5
529,238 - GFF531 0.68 -0.2
529,238 - GFF531 0.68 +1.2
529,239 - GFF531 0.68 -0.9
529,262 + GFF531 0.70 -0.0
529,275 + GFF531 0.71 -0.4
529,286 + GFF531 0.72 -0.2

Or see this region's nucleotide sequence