Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5280 and GFF5281 overlap by 4 nucleotides GFF5281 and GFF5282 are separated by 97 nucleotides GFF5282 and GFF5283 are separated by 509 nucleotides
GFF5280 - hypothetical protein, at 5,271,934 to 5,272,179
GFF5280
GFF5281 - hypothetical protein, at 5,272,176 to 5,272,463
GFF5281
GFF5282 - hypothetical protein, at 5,272,561 to 5,272,851
GFF5282
GFF5283 - Mobilization protein MobA @ Conjugal transfer protein TraA, at 5,273,361 to 5,275,301
GFF5283
Position (kb) 5272
5273 Strain fitness (log2 ratio) -2
-1
0
1 at 5271.567 kb on - strand at 5271.610 kb on - strand at 5271.620 kb on - strand at 5271.650 kb on - strand at 5271.705 kb on - strand at 5271.712 kb on + strand at 5271.730 kb on - strand at 5271.777 kb on + strand at 5271.804 kb on - strand at 5271.981 kb on + strand, within GFF5280 at 5272.003 kb on - strand, within GFF5280 at 5272.012 kb on + strand, within GFF5280 at 5272.017 kb on - strand, within GFF5280 at 5272.020 kb on - strand, within GFF5280 at 5272.027 kb on + strand, within GFF5280 at 5272.032 kb on + strand, within GFF5280 at 5272.032 kb on + strand, within GFF5280 at 5272.032 kb on + strand, within GFF5280 at 5272.032 kb on + strand, within GFF5280 at 5272.032 kb on + strand, within GFF5280 at 5272.032 kb on + strand, within GFF5280 at 5272.032 kb on + strand, within GFF5280 at 5272.040 kb on - strand, within GFF5280 at 5272.040 kb on - strand, within GFF5280 at 5272.040 kb on - strand, within GFF5280 at 5272.047 kb on + strand, within GFF5280 at 5272.047 kb on + strand, within GFF5280 at 5272.056 kb on - strand, within GFF5280 at 5272.068 kb on - strand, within GFF5280 at 5272.095 kb on + strand, within GFF5280 at 5272.095 kb on + strand, within GFF5280 at 5272.095 kb on + strand, within GFF5280 at 5272.105 kb on + strand, within GFF5280 at 5272.105 kb on + strand, within GFF5280 at 5272.105 kb on + strand, within GFF5280 at 5272.105 kb on + strand, within GFF5280 at 5272.105 kb on + strand, within GFF5280 at 5272.105 kb on + strand, within GFF5280 at 5272.107 kb on + strand, within GFF5280 at 5272.107 kb on + strand, within GFF5280 at 5272.107 kb on + strand, within GFF5280 at 5272.113 kb on - strand, within GFF5280 at 5272.113 kb on - strand, within GFF5280 at 5272.113 kb on - strand, within GFF5280 at 5272.113 kb on - strand, within GFF5280 at 5272.113 kb on - strand, within GFF5280 at 5272.113 kb on - strand, within GFF5280 at 5272.113 kb on - strand, within GFF5280 at 5272.115 kb on - strand, within GFF5280 at 5272.115 kb on - strand, within GFF5280 at 5272.151 kb on + strand, within GFF5280 at 5272.151 kb on + strand, within GFF5280 at 5272.151 kb on + strand, within GFF5280 at 5272.151 kb on + strand, within GFF5280 at 5272.151 kb on + strand, within GFF5280 at 5272.159 kb on - strand at 5272.159 kb on - strand at 5272.159 kb on - strand at 5272.289 kb on + strand, within GFF5281 at 5272.349 kb on + strand, within GFF5281 at 5272.349 kb on + strand, within GFF5281 at 5272.354 kb on + strand, within GFF5281 at 5272.354 kb on + strand, within GFF5281 at 5272.354 kb on + strand, within GFF5281 at 5272.354 kb on + strand, within GFF5281 at 5272.354 kb on + strand, within GFF5281 at 5272.354 kb on + strand, within GFF5281 at 5272.452 kb on + strand at 5272.452 kb on + strand at 5272.458 kb on + strand at 5272.464 kb on + strand at 5272.470 kb on - strand at 5272.472 kb on + strand at 5272.480 kb on - strand at 5272.480 kb on - strand at 5272.482 kb on + strand at 5272.490 kb on - strand at 5272.503 kb on + strand at 5272.514 kb on + strand at 5272.514 kb on + strand at 5272.514 kb on + strand at 5272.517 kb on + strand at 5272.517 kb on - strand at 5272.522 kb on - strand at 5272.522 kb on - strand at 5272.524 kb on + strand at 5272.527 kb on + strand at 5272.527 kb on + strand at 5272.530 kb on - strand at 5272.535 kb on - strand at 5272.535 kb on - strand at 5272.542 kb on + strand at 5272.542 kb on + strand at 5272.542 kb on + strand at 5272.546 kb on + strand at 5272.547 kb on + strand at 5272.547 kb on + strand at 5272.547 kb on + strand at 5272.550 kb on - strand at 5272.554 kb on - strand at 5272.554 kb on - strand at 5272.555 kb on - strand at 5272.591 kb on - strand, within GFF5282 at 5272.635 kb on - strand, within GFF5282 at 5272.650 kb on + strand, within GFF5282 at 5272.650 kb on + strand, within GFF5282 at 5272.650 kb on + strand, within GFF5282 at 5272.655 kb on - strand, within GFF5282 at 5272.658 kb on - strand, within GFF5282 at 5272.658 kb on - strand, within GFF5282 at 5272.676 kb on - strand, within GFF5282 at 5272.676 kb on - strand, within GFF5282 at 5272.716 kb on + strand, within GFF5282 at 5272.716 kb on + strand, within GFF5282 at 5272.716 kb on + strand, within GFF5282 at 5272.716 kb on + strand, within GFF5282 at 5272.716 kb on + strand, within GFF5282 at 5272.727 kb on + strand, within GFF5282 at 5272.754 kb on + strand, within GFF5282 at 5272.754 kb on + strand, within GFF5282 at 5272.754 kb on + strand, within GFF5282 at 5272.818 kb on + strand, within GFF5282 at 5273.043 kb on + strand at 5273.043 kb on + strand at 5273.043 kb on + strand at 5273.043 kb on + strand at 5273.302 kb on + strand at 5273.325 kb on - strand at 5273.338 kb on + strand at 5273.346 kb on - strand at 5273.347 kb on + strand at 5273.353 kb on + strand at 5273.359 kb on - strand at 5273.361 kb on - strand at 5273.361 kb on - strand at 5273.404 kb on - strand at 5273.426 kb on - strand at 5273.436 kb on - strand at 5273.436 kb on - strand at 5273.436 kb on - strand at 5273.469 kb on + strand at 5273.469 kb on + strand at 5273.469 kb on - strand at 5273.474 kb on + strand at 5273.477 kb on - strand at 5273.477 kb on - strand at 5273.479 kb on - strand at 5273.482 kb on - strand at 5273.482 kb on - strand at 5273.499 kb on + strand at 5273.499 kb on + strand at 5273.499 kb on + strand at 5273.499 kb on + strand at 5273.504 kb on + strand at 5273.504 kb on + strand at 5273.507 kb on - strand at 5273.507 kb on - strand at 5273.507 kb on - strand at 5273.507 kb on - strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.509 kb on + strand at 5273.512 kb on - strand at 5273.514 kb on + strand at 5273.514 kb on + strand at 5273.514 kb on + strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.517 kb on - strand at 5273.522 kb on - strand at 5273.522 kb on - strand at 5273.556 kb on + strand, within GFF5283 at 5273.556 kb on + strand, within GFF5283 at 5273.564 kb on - strand, within GFF5283 at 5273.564 kb on - strand, within GFF5283 at 5273.564 kb on - strand, within GFF5283 at 5273.564 kb on - strand, within GFF5283 at 5273.564 kb on - strand, within GFF5283 at 5273.568 kb on + strand, within GFF5283 at 5273.577 kb on + strand, within GFF5283 at 5273.577 kb on + strand, within GFF5283 at 5273.577 kb on + strand, within GFF5283 at 5273.587 kb on + strand, within GFF5283 at 5273.647 kb on + strand, within GFF5283 at 5273.649 kb on - strand, within GFF5283 at 5273.687 kb on + strand, within GFF5283 at 5273.694 kb on - strand, within GFF5283 at 5273.713 kb on + strand, within GFF5283 at 5273.720 kb on - strand, within GFF5283 at 5273.734 kb on - strand, within GFF5283 at 5273.734 kb on - strand, within GFF5283 at 5273.769 kb on + strand, within GFF5283 at 5273.776 kb on + strand, within GFF5283 at 5273.821 kb on + strand, within GFF5283 at 5273.829 kb on + strand, within GFF5283 at 5273.829 kb on - strand, within GFF5283 at 5273.832 kb on - strand, within GFF5283 at 5273.837 kb on - strand, within GFF5283
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 5,271,567 - +0.2 5,271,610 - +1.0 5,271,620 - +0.2 5,271,650 - -0.1 5,271,705 - -0.9 5,271,712 + -0.2 5,271,730 - -0.3 5,271,777 + -0.3 5,271,804 - -0.1 5,271,981 + GFF5280 0.19 +0.0 5,272,003 - GFF5280 0.28 +0.9 5,272,012 + GFF5280 0.32 -0.4 5,272,017 - GFF5280 0.34 +0.6 5,272,020 - GFF5280 0.35 +0.4 5,272,027 + GFF5280 0.38 +1.1 5,272,032 + GFF5280 0.40 -1.8 5,272,032 + GFF5280 0.40 +0.7 5,272,032 + GFF5280 0.40 +0.2 5,272,032 + GFF5280 0.40 -0.2 5,272,032 + GFF5280 0.40 +0.6 5,272,032 + GFF5280 0.40 -1.3 5,272,032 + GFF5280 0.40 +0.7 5,272,040 - GFF5280 0.43 +0.0 5,272,040 - GFF5280 0.43 +0.5 5,272,040 - GFF5280 0.43 +0.2 5,272,047 + GFF5280 0.46 +1.0 5,272,047 + GFF5280 0.46 -0.1 5,272,056 - GFF5280 0.50 +1.5 5,272,068 - GFF5280 0.54 -0.8 5,272,095 + GFF5280 0.65 +0.3 5,272,095 + GFF5280 0.65 +0.4 5,272,095 + GFF5280 0.65 -0.4 5,272,105 + GFF5280 0.70 +0.7 5,272,105 + GFF5280 0.70 +0.1 5,272,105 + GFF5280 0.70 +1.2 5,272,105 + GFF5280 0.70 +0.2 5,272,105 + GFF5280 0.70 -0.6 5,272,105 + GFF5280 0.70 +0.3 5,272,107 + GFF5280 0.70 +0.5 5,272,107 + GFF5280 0.70 +0.0 5,272,107 + GFF5280 0.70 -0.2 5,272,113 - GFF5280 0.73 -0.1 5,272,113 - GFF5280 0.73 +0.0 5,272,113 - GFF5280 0.73 +1.2 5,272,113 - GFF5280 0.73 -0.5 5,272,113 - GFF5280 0.73 -1.4 5,272,113 - GFF5280 0.73 -1.3 5,272,113 - GFF5280 0.73 -0.6 5,272,115 - GFF5280 0.74 +0.0 5,272,115 - GFF5280 0.74 +1.1 5,272,151 + GFF5280 0.88 -0.6 5,272,151 + GFF5280 0.88 -0.6 5,272,151 + GFF5280 0.88 +0.6 5,272,151 + GFF5280 0.88 -2.1 5,272,151 + GFF5280 0.88 +0.1 5,272,159 - -1.0 5,272,159 - -0.1 5,272,159 - -1.4 5,272,289 + GFF5281 0.39 +1.1 5,272,349 + GFF5281 0.60 +0.0 5,272,349 + GFF5281 0.60 +1.2 5,272,354 + GFF5281 0.62 -1.8 5,272,354 + GFF5281 0.62 -1.0 5,272,354 + GFF5281 0.62 -1.0 5,272,354 + GFF5281 0.62 +0.1 5,272,354 + GFF5281 0.62 -2.1 5,272,354 + GFF5281 0.62 -1.6 5,272,452 + +0.9 5,272,452 + +0.2 5,272,458 + +0.4 5,272,464 + +1.4 5,272,470 - -0.4 5,272,472 + -0.3 5,272,480 - -1.4 5,272,480 - -0.4 5,272,482 + -2.2 5,272,490 - -0.4 5,272,503 + -1.8 5,272,514 + -1.2 5,272,514 + +1.0 5,272,514 + +0.0 5,272,517 + -0.7 5,272,517 - -2.0 5,272,522 - -0.2 5,272,522 - -0.3 5,272,524 + -0.1 5,272,527 + +0.5 5,272,527 + +0.2 5,272,530 - +1.3 5,272,535 - +0.3 5,272,535 - -0.8 5,272,542 + +0.1 5,272,542 + +0.7 5,272,542 + +0.4 5,272,546 + +0.1 5,272,547 + +0.6 5,272,547 + +0.5 5,272,547 + -1.0 5,272,550 - +0.8 5,272,554 - -0.9 5,272,554 - +0.9 5,272,555 - +0.0 5,272,591 - GFF5282 0.10 -0.4 5,272,635 - GFF5282 0.25 +1.5 5,272,650 + GFF5282 0.31 +0.4 5,272,650 + GFF5282 0.31 +0.1 5,272,650 + GFF5282 0.31 +0.3 5,272,655 - GFF5282 0.32 +1.5 5,272,658 - GFF5282 0.33 +0.5 5,272,658 - GFF5282 0.33 -1.0 5,272,676 - GFF5282 0.40 -0.7 5,272,676 - GFF5282 0.40 +1.0 5,272,716 + GFF5282 0.53 -0.4 5,272,716 + GFF5282 0.53 -1.1 5,272,716 + GFF5282 0.53 -1.3 5,272,716 + GFF5282 0.53 -1.9 5,272,716 + GFF5282 0.53 -1.7 5,272,727 + GFF5282 0.57 -0.1 5,272,754 + GFF5282 0.66 +0.9 5,272,754 + GFF5282 0.66 +0.7 5,272,754 + GFF5282 0.66 -1.0 5,272,818 + GFF5282 0.88 +0.3 5,273,043 + +0.7 5,273,043 + -2.0 5,273,043 + -1.6 5,273,043 + +0.5 5,273,302 + -0.7 5,273,325 - -1.0 5,273,338 + -1.4 5,273,346 - -1.7 5,273,347 + +0.4 5,273,353 + +0.4 5,273,359 - -1.3 5,273,361 - -0.3 5,273,361 - +0.9 5,273,404 - -0.2 5,273,426 - -0.0 5,273,436 - +0.1 5,273,436 - +1.1 5,273,436 - -1.6 5,273,469 + -0.6 5,273,469 + -1.6 5,273,469 - +0.6 5,273,474 + -1.9 5,273,477 - -2.0 5,273,477 - -0.3 5,273,479 - +0.6 5,273,482 - -0.2 5,273,482 - +0.2 5,273,499 + -0.7 5,273,499 + -0.0 5,273,499 + -0.3 5,273,499 + +0.9 5,273,504 + -0.6 5,273,504 + +0.6 5,273,507 - -0.2 5,273,507 - +0.6 5,273,507 - +0.9 5,273,507 - -0.2 5,273,509 + +0.3 5,273,509 + -0.6 5,273,509 + +0.2 5,273,509 + -1.7 5,273,509 + -0.5 5,273,509 + +0.4 5,273,509 + -0.6 5,273,509 + -0.1 5,273,509 + +1.5 5,273,509 + -0.7 5,273,509 + -2.1 5,273,509 + -0.9 5,273,509 + -1.7 5,273,509 + +0.2 5,273,512 - +0.1 5,273,514 + -0.9 5,273,514 + +0.0 5,273,514 + -1.8 5,273,517 - +0.0 5,273,517 - +0.7 5,273,517 - -1.7 5,273,517 - -2.3 5,273,517 - -0.5 5,273,517 - +0.1 5,273,517 - -1.9 5,273,517 - -0.2 5,273,517 - -0.2 5,273,517 - +0.0 5,273,517 - -0.1 5,273,522 - -2.2 5,273,522 - -1.6 5,273,556 + GFF5283 0.10 -0.8 5,273,556 + GFF5283 0.10 -0.3 5,273,564 - GFF5283 0.10 -2.0 5,273,564 - GFF5283 0.10 -1.2 5,273,564 - GFF5283 0.10 +0.2 5,273,564 - GFF5283 0.10 -2.3 5,273,564 - GFF5283 0.10 -0.2 5,273,568 + GFF5283 0.11 +1.2 5,273,577 + GFF5283 0.11 +0.2 5,273,577 + GFF5283 0.11 -0.6 5,273,577 + GFF5283 0.11 -1.5 5,273,587 + GFF5283 0.12 +0.6 5,273,647 + GFF5283 0.15 -0.5 5,273,649 - GFF5283 0.15 -0.1 5,273,687 + GFF5283 0.17 -0.5 5,273,694 - GFF5283 0.17 -0.4 5,273,713 + GFF5283 0.18 -1.1 5,273,720 - GFF5283 0.18 -1.5 5,273,734 - GFF5283 0.19 -1.1 5,273,734 - GFF5283 0.19 -1.1 5,273,769 + GFF5283 0.21 -0.7 5,273,776 + GFF5283 0.21 -0.9 5,273,821 + GFF5283 0.24 +0.4 5,273,829 + GFF5283 0.24 -0.5 5,273,829 - GFF5283 0.24 -0.3 5,273,832 - GFF5283 0.24 -1.7 5,273,837 - GFF5283 0.25 -0.1
Or see this region's nucleotide sequence