Strain Fitness in Sphingobium sp. HT1-2 around GFF5198

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,195,357	+		GFF5197	0.63	-0.4
5,195,372	+		GFF5197	0.64	-0.2
5,195,421	+		GFF5197	0.67	+1.0
5,195,425	+		GFF5197	0.67	-0.5
5,195,425	+		GFF5197	0.67	-1.1
5,195,429	-		GFF5197	0.67	+0.5
5,195,429	-		GFF5197	0.67	+1.0
5,195,432	+		GFF5197	0.67	+1.0
5,195,433	-		GFF5197	0.67	+1.1
5,195,433	-		GFF5197	0.67	+0.4
5,195,439	-		GFF5197	0.68	+1.6
5,195,439	-		GFF5197	0.68	+0.1
5,195,440	-		GFF5197	0.68	+0.8
5,195,440	-		GFF5197	0.68	-0.7
5,195,447	+		GFF5197	0.68	-0.1
5,195,447	+		GFF5197	0.68	+0.4
5,195,490	-		GFF5197	0.71	-0.2
5,195,495	+		GFF5197	0.71	-1.6
5,195,550	+		GFF5197	0.74	+0.0
5,195,559	+		GFF5197	0.75	-0.0
5,195,591	-		GFF5197	0.76	-0.2
5,195,591	-		GFF5197	0.76	+0.5
5,195,598	-		GFF5197	0.77	-0.2
5,195,598	-		GFF5197	0.77	+0.3
5,195,614	-		GFF5197	0.78	-0.0
5,195,620	-		GFF5197	0.78	-1.6
5,195,643	+		GFF5197	0.79	+1.2
5,195,663	+		GFF5197	0.80	+0.2
5,195,663	+		GFF5197	0.80	+0.2
5,195,663	+		GFF5197	0.80	+0.4
5,195,663	+		GFF5197	0.80	-0.8
5,195,671	+		GFF5197	0.81	-0.5
5,195,674	+		GFF5197	0.81	+0.9
5,195,700	+		GFF5197	0.82	-0.6
5,195,708	-		GFF5197	0.83	-1.3
5,195,709	+		GFF5197	0.83	-0.2
5,195,709	+		GFF5197	0.83	-1.8
5,195,710	-		GFF5197	0.83	+0.0
5,195,717	-		GFF5197	0.83	+1.0
5,195,717	-		GFF5197	0.83	-0.4
5,195,728	+		GFF5197	0.84	-0.3
5,195,795	-		GFF5197	0.88	+0.6
5,195,799	+		GFF5197	0.88	-0.2
5,195,807	-		GFF5197	0.89	-0.9
5,195,826	-		GFF5197	0.90	-0.3
5,195,837	+				-1.4
5,195,853	+				-0.5
5,195,872	+				+1.7
5,195,872	+				-0.2
5,195,872	+				-0.2
5,195,872	+				-1.6
5,195,872	+				+1.2
5,195,872	+				+0.1
5,195,875	-				-0.7
5,195,901	+				+0.3
5,195,901	+				-0.4
5,195,916	-				+0.5
5,195,927	+				+0.5
5,195,967	-				+1.4
5,195,974	+				+0.4
5,195,982	-				-0.0
5,196,004	-				+0.3
5,196,004	-				+0.8
5,196,027	-				+0.5
5,196,046	-				+0.5
5,196,295	-				-0.5
5,196,298	+				-0.0
5,196,298	+				-0.1
5,196,298	-				+0.6
5,196,311	-				+1.0
5,196,339	+				-0.1
5,196,365	-				+0.2
5,196,414	-				-0.8
5,196,441	-				+0.5
5,196,452	-				-1.6
5,196,463	+				+0.7
5,196,485	+				+0.4
5,196,485	+				-1.9
5,196,485	+				-0.2
5,196,485	+				-0.1
5,196,488	-				-2.6
5,196,488	-				+1.2
5,196,493	-		GFF5198	0.10	-0.7
5,196,493	-		GFF5198	0.10	+0.7
5,196,493	-		GFF5198	0.10	+0.3
5,196,493	-		GFF5198	0.10	+1.0
5,196,493	-		GFF5198	0.10	-0.0
5,196,493	-		GFF5198	0.10	+0.1
5,196,493	-		GFF5198	0.10	+0.0
5,196,499	-		GFF5198	0.11	-0.3
5,196,513	-		GFF5198	0.12	-0.6
5,196,520	+		GFF5198	0.12	-1.1
5,196,528	-		GFF5198	0.13	-1.5
5,196,528	-		GFF5198	0.13	+1.2
5,196,535	-		GFF5198	0.13	-1.3
5,196,546	+		GFF5198	0.14	-2.2
5,196,554	-		GFF5198	0.15	-0.0
5,196,566	+		GFF5198	0.15	-0.7
5,196,566	+		GFF5198	0.15	+1.5
5,196,566	+		GFF5198	0.15	-0.4
5,196,566	+		GFF5198	0.15	+0.1
5,196,568	+		GFF5198	0.16	+0.4
5,196,569	-		GFF5198	0.16	+1.2
5,196,574	-		GFF5198	0.16	-0.4
5,196,574	-		GFF5198	0.16	-1.0
5,196,576	-		GFF5198	0.16	-0.2
5,196,593	-		GFF5198	0.17	-3.0
5,196,598	+		GFF5198	0.18	-1.6
5,196,600	+		GFF5198	0.18	+0.7
5,196,606	-		GFF5198	0.18	-0.3
5,196,607	-		GFF5198	0.18	-0.1
5,196,608	+		GFF5198	0.19	-0.7
5,196,608	-		GFF5198	0.19	-1.3
5,196,638	-		GFF5198	0.21	+0.3
5,196,646	+		GFF5198	0.21	-1.2
5,196,649	-		GFF5198	0.22	-0.0
5,196,654	-		GFF5198	0.22	+0.2
5,196,656	-		GFF5198	0.22	+0.5
5,196,663	+		GFF5198	0.23	+0.2
5,196,668	+		GFF5198	0.23	+0.2
5,196,671	-		GFF5198	0.23	-1.6
5,196,671	-		GFF5198	0.23	-0.9
5,196,690	-		GFF5198	0.25	+0.3
5,196,690	-		GFF5198	0.25	-1.6
5,196,695	-		GFF5198	0.25	-0.1
5,196,697	+		GFF5198	0.25	+2.6
5,196,707	+		GFF5198	0.26	-0.7
5,196,726	+		GFF5198	0.27	-2.3
5,196,749	-		GFF5198	0.29	+0.1
5,196,749	-		GFF5198	0.29	+0.8
5,196,751	-		GFF5198	0.29	+0.0
5,196,762	+		GFF5198	0.30	+1.0
5,196,770	-		GFF5198	0.30	-0.4
5,196,785	+		GFF5198	0.32	-1.6
5,196,817	-		GFF5198	0.34	-1.7
5,196,825	-		GFF5198	0.35	+0.5
5,196,836	+		GFF5198	0.35	+1.0
5,196,837	+		GFF5198	0.35	+1.1
5,196,838	+		GFF5198	0.35	-0.9
5,196,844	-		GFF5198	0.36	+0.4
5,196,844	-		GFF5198	0.36	-0.9
5,196,845	-		GFF5198	0.36	+0.2
5,196,849	-		GFF5198	0.36	-1.7
5,196,851	-		GFF5198	0.36	+0.6
5,196,856	+		GFF5198	0.37	+1.0
5,196,858	-		GFF5198	0.37	-0.4
5,196,889	+		GFF5198	0.39	+0.8
5,196,908	-		GFF5198	0.41	-0.3
5,196,934	+		GFF5198	0.43	+0.5
5,196,939	+		GFF5198	0.43	+0.3
5,196,939	+		GFF5198	0.43	+0.8
5,196,939	+		GFF5198	0.43	-0.0
5,196,939	+		GFF5198	0.43	-0.3
5,196,939	+		GFF5198	0.43	-0.1
5,196,939	+		GFF5198	0.43	+1.5
5,196,939	+		GFF5198	0.43	+1.0
5,196,939	+		GFF5198	0.43	+0.5
5,196,939	+		GFF5198	0.43	+0.8
5,196,939	+		GFF5198	0.43	-0.2
5,196,939	+		GFF5198	0.43	-0.4
5,196,941	-		GFF5198	0.43	+1.1
5,196,947	-		GFF5198	0.43	+0.2
5,196,947	-		GFF5198	0.43	-0.4
5,196,947	-		GFF5198	0.43	+0.4
5,196,947	-		GFF5198	0.43	+1.0
5,196,947	-		GFF5198	0.43	+0.2
5,196,947	-		GFF5198	0.43	-0.6
5,196,947	-		GFF5198	0.43	+0.1
5,196,947	-		GFF5198	0.43	+1.0
5,196,947	-		GFF5198	0.43	-0.2
5,196,947	-		GFF5198	0.43	-1.0
5,196,947	-		GFF5198	0.43	+0.2
5,196,947	-		GFF5198	0.43	+0.6
5,196,947	-		GFF5198	0.43	-0.3
5,196,961	+		GFF5198	0.45	+1.4
5,196,967	+		GFF5198	0.45	-1.1
5,196,975	-		GFF5198	0.46	-1.0
5,196,975	-		GFF5198	0.46	-0.8
5,197,001	+		GFF5198	0.47	+0.1
5,197,005	+		GFF5198	0.48	+0.9
5,197,007	-		GFF5198	0.48	+0.2
5,197,009	-		GFF5198	0.48	-0.2
5,197,026	+		GFF5198	0.49	+0.2
5,197,026	+		GFF5198	0.49	-0.5
5,197,026	+		GFF5198	0.49	-1.6
5,197,034	-		GFF5198	0.50	-1.3
5,197,034	-		GFF5198	0.50	+1.0
5,197,034	-		GFF5198	0.50	+1.2
5,197,034	-		GFF5198	0.50	+0.8
5,197,036	+		GFF5198	0.50	+1.4
5,197,036	+		GFF5198	0.50	+0.2
5,197,036	+		GFF5198	0.50	-0.7
5,197,036	+		GFF5198	0.50	-0.5
5,197,036	+		GFF5198	0.50	-1.5
5,197,036	+		GFF5198	0.50	+1.2
5,197,036	+		GFF5198	0.50	-0.3
5,197,036	-		GFF5198	0.50	+1.6
5,197,044	-		GFF5198	0.51	+0.8
5,197,044	-		GFF5198	0.51	-0.1
5,197,044	-		GFF5198	0.51	-0.1
5,197,044	-		GFF5198	0.51	+0.3
5,197,044	-		GFF5198	0.51	-0.0
5,197,062	-		GFF5198	0.52	-0.3
5,197,064	+		GFF5198	0.52	+0.2
5,197,064	-		GFF5198	0.52	+1.4
5,197,084	+		GFF5198	0.54	-1.4
5,197,084	+		GFF5198	0.54	-0.5
5,197,084	+		GFF5198	0.54	+0.5
5,197,090	-		GFF5198	0.54	+0.4
5,197,092	+		GFF5198	0.54	+0.2
5,197,092	+		GFF5198	0.54	+0.8
5,197,092	-		GFF5198	0.54	-0.3
5,197,092	-		GFF5198	0.54	+0.3
5,197,092	-		GFF5198	0.54	+0.1
5,197,097	+		GFF5198	0.55	+0.3
5,197,097	+		GFF5198	0.55	-0.8
5,197,097	+		GFF5198	0.55	-0.1
5,197,100	-		GFF5198	0.55	-0.1
5,197,100	-		GFF5198	0.55	+0.1
5,197,100	-		GFF5198	0.55	-0.7
5,197,100	-		GFF5198	0.55	-0.2
5,197,100	-		GFF5198	0.55	+0.0
5,197,105	-		GFF5198	0.55	+0.1
5,197,116	+		GFF5198	0.56	-0.1
5,197,136	+		GFF5198	0.57	+0.4
5,197,136	-		GFF5198	0.57	-0.6
5,197,165	-		GFF5198	0.60	+1.4
5,197,200	+		GFF5198	0.62	-0.0
5,197,204	+		GFF5198	0.62	-0.0
5,197,212	+		GFF5198	0.63	-0.1
5,197,220	-		GFF5198	0.64	+0.9
5,197,225	-		GFF5198	0.64	+0.3
5,197,225	-		GFF5198	0.64	-2.0
5,197,235	-		GFF5198	0.65	+0.3
5,197,237	-		GFF5198	0.65	+1.0
5,197,248	+		GFF5198	0.66	-0.1
5,197,248	+		GFF5198	0.66	-2.6
5,197,248	+		GFF5198	0.66	+1.3
5,197,248	+		GFF5198	0.66	-0.5
5,197,248	+		GFF5198	0.66	-0.3
5,197,248	+		GFF5198	0.66	-1.8
5,197,249	-		GFF5198	0.66	-0.6
5,197,253	+		GFF5198	0.66	+0.2
5,197,253	+		GFF5198	0.66	+0.8
5,197,256	-		GFF5198	0.66	-1.8
5,197,256	-		GFF5198	0.66	+0.7
5,197,256	-		GFF5198	0.66	+0.1
5,197,256	-		GFF5198	0.66	-1.2
5,197,256	-		GFF5198	0.66	-1.2
5,197,256	-		GFF5198	0.66	-1.4
5,197,256	-		GFF5198	0.66	-1.8
5,197,278	-		GFF5198	0.68	-1.2
5,197,305	+		GFF5198	0.70	-0.1
5,197,338	+		GFF5198	0.72	-0.2
5,197,393	+		GFF5198	0.76	+0.3
5,197,398	-		GFF5198	0.77	-0.9
5,197,400	+		GFF5198	0.77	+0.3
5,197,408	-		GFF5198	0.77	+0.5
5,197,414	+		GFF5198	0.78	+1.0
5,197,441	-		GFF5198	0.80	+1.1
5,197,451	+		GFF5198	0.81	-1.9
5,197,461	-		GFF5198	0.81	-0.1
5,197,463	-		GFF5198	0.81	-0.0
5,197,490	+		GFF5198	0.83	+0.5
5,197,500	+		GFF5198	0.84	-1.8
5,197,507	-		GFF5198	0.85	-2.5
5,197,509	+		GFF5198	0.85	+0.8
5,197,509	-		GFF5198	0.85	+1.4
5,197,509	-		GFF5198	0.85	+0.3
5,197,544	-		GFF5198	0.87	-1.2
5,197,544	-		GFF5198	0.87	+0.7
5,197,554	+		GFF5198	0.88	+0.3
5,197,608	+				+1.1
5,197,619	+				+0.7
5,197,626	-				+1.3
5,197,627	-				-1.5
5,197,664	-				+0.1
5,197,679	+				+0.3
5,197,685	-				-0.4
5,197,694	-				-0.5
5,197,694	-				-1.4
5,197,704	-				-2.0
5,197,704	-				-0.2
5,197,709	+				-1.5
5,197,709	+				+0.2
5,197,709	+				-0.2
5,197,714	+				+0.4
5,197,714	+				+0.0
5,197,717	-				+0.2
5,197,717	-				-0.4
5,197,717	-				-0.2
5,197,717	-				-0.3
5,197,732	-				-0.6
5,197,790	+		GFF5199	0.13	+0.1
5,197,790	+		GFF5199	0.13	-0.9
5,197,790	+		GFF5199	0.13	-1.5
5,197,790	+		GFF5199	0.13	-0.8
5,197,790	+		GFF5199	0.13	+0.1
5,197,798	-		GFF5199	0.14	-0.3
5,197,798	-		GFF5199	0.14	+0.1
5,197,811	+		GFF5199	0.17	+1.5
5,197,819	-		GFF5199	0.18	+0.4
5,197,819	-		GFF5199	0.18	+0.0
5,197,860	+		GFF5199	0.25	-0.0
5,197,860	+		GFF5199	0.25	+0.3
5,197,894	-		GFF5199	0.30	-1.4
5,197,902	-		GFF5199	0.32	-0.3
5,197,909	+		GFF5199	0.33	+0.7
5,197,909	+		GFF5199	0.33	-0.7
5,197,909	+		GFF5199	0.33	-0.0
5,197,909	+		GFF5199	0.33	-0.5
5,197,914	+		GFF5199	0.33	-1.2
5,197,920	+		GFF5199	0.34	+1.7
5,197,920	+		GFF5199	0.34	-2.3
5,197,922	-		GFF5199	0.35	+0.6
5,197,970	-		GFF5199	0.43	+0.5
5,197,977	-		GFF5199	0.44	-0.3
5,197,977	-		GFF5199	0.44	+0.2
5,197,977	-		GFF5199	0.44	+0.9
5,197,981	+		GFF5199	0.45	+0.7
5,197,998	-		GFF5199	0.47	+0.9
5,198,012	+		GFF5199	0.50	-2.3
5,198,012	+		GFF5199	0.50	+1.0
5,198,041	-		GFF5199	0.54	+2.0
5,198,043	-		GFF5199	0.55	+0.3
5,198,043	-		GFF5199	0.55	+0.3
5,198,064	+		GFF5199	0.58	-0.2
5,198,071	+		GFF5199	0.59	-0.7
5,198,072	-		GFF5199	0.60	+0.7
5,198,077	-		GFF5199	0.60	+0.8
5,198,079	+		GFF5199	0.61	-0.6
5,198,082	-		GFF5199	0.61	+0.4
5,198,082	-		GFF5199	0.61	-0.7
5,198,085	+		GFF5199	0.62	-1.0
5,198,085	+		GFF5199	0.62	+0.8
5,198,085	+		GFF5199	0.62	-1.2
5,198,085	+		GFF5199	0.62	-2.2
5,198,085	+		GFF5199	0.62	+0.6
5,198,085	+		GFF5199	0.62	+0.3
5,198,085	+		GFF5199	0.62	-1.1
5,198,085	+		GFF5199	0.62	-0.5
5,198,087	-		GFF5199	0.62	-0.5
5,198,093	-		GFF5199	0.63	-0.1
5,198,093	-		GFF5199	0.63	+1.0
5,198,093	-		GFF5199	0.63	-0.5
5,198,093	-		GFF5199	0.63	-0.4
5,198,093	-		GFF5199	0.63	+0.3
5,198,093	-		GFF5199	0.63	+0.0
5,198,093	-		GFF5199	0.63	-0.0
5,198,093	-		GFF5199	0.63	-0.5
5,198,093	-		GFF5199	0.63	-0.8
5,198,093	-		GFF5199	0.63	-0.7
5,198,093	-		GFF5199	0.63	+1.5
5,198,093	-		GFF5199	0.63	+0.7
5,198,093	-		GFF5199	0.63	+0.8
5,198,093	-		GFF5199	0.63	-0.6
5,198,093	-		GFF5199	0.63	+1.4
5,198,103	-		GFF5199	0.65	-0.6
5,198,114	-		GFF5199	0.67	+0.1
5,198,131	-		GFF5199	0.69	+0.2
5,198,165	+		GFF5199	0.75	-1.8
5,198,184	+		GFF5199	0.78	+1.3
5,198,189	+		GFF5199	0.79	-0.3
5,198,252	+		GFF5199	0.89	-0.6
5,198,252	+		GFF5199	0.89	+1.1
5,198,252	+		GFF5199	0.89	+0.5
5,198,260	-				+1.1
5,198,260	-				+0.1
5,198,260	-				-0.1
5,198,260	-				-1.5
5,198,263	+				-0.3
5,198,270	+				-1.7
5,198,292	-				-1.9
5,198,323	-				+0.2
5,198,350	-				-0.5
5,198,473	+		GFF5200	0.15	+1.6
5,198,481	-		GFF5200	0.21	-0.1
5,198,483	+		GFF5200	0.22	+0.0
5,198,501	+		GFF5200	0.35	+1.5
5,198,506	+		GFF5200	0.38	-0.7
5,198,506	+		GFF5200	0.38	-0.9
5,198,509	-		GFF5200	0.40	-0.0
5,198,509	-		GFF5200	0.40	+0.3
5,198,514	-		GFF5200	0.44	-0.3
5,198,525	-		GFF5200	0.52	-0.3
5,198,553	-		GFF5200	0.72	+0.8
5,198,557	+		GFF5200	0.74	-1.6
5,198,570	-		GFF5200	0.84	+0.2
5,198,667	+				-1.2
5,198,669	+				+0.1
5,198,669	+				-0.4
5,198,671	+				-1.1
5,198,677	-				-0.1