Strain Fitness in Sphingobium sp. HT1-2 around GFF5091

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,080,692	-		GFF5089	0.71	-0.5
5,080,696	-		GFF5089	0.72	-0.6
5,080,699	+		GFF5089	0.72	+0.5
5,080,706	-		GFF5089	0.74	-0.1
5,080,712	+		GFF5089	0.74	-0.7
5,080,720	-		GFF5089	0.76	-0.0
5,080,725	+		GFF5089	0.77	-0.7
5,080,728	-		GFF5089	0.77	+1.4
5,080,738	-		GFF5089	0.79	+0.5
5,080,744	+		GFF5089	0.79	-0.0
5,080,785	+		GFF5089	0.86	-1.9
5,080,793	-		GFF5089	0.87	-1.8
5,080,826	-				+1.3
5,080,843	-				+1.3
5,080,860	-				-0.3
5,080,864	+				-0.2
5,080,869	+				-0.5
5,080,869	+				-0.4
5,080,877	-				-0.0
5,080,877	-				-0.8
5,080,877	-				-0.4
5,080,877	-				-0.0
5,080,877	-				-1.3
5,080,877	-				+0.3
5,080,877	-				+0.0
5,080,879	-				+0.5
5,080,923	+				-0.2
5,080,923	+				-0.7
5,080,958	-				-1.0
5,080,967	+				-0.8
5,080,967	+				-0.5
5,080,983	-				-0.2
5,081,037	-		GFF5090	0.15	-0.8
5,081,060	-		GFF5090	0.18	+0.1
5,081,060	-		GFF5090	0.18	+0.2
5,081,073	+		GFF5090	0.20	-0.4
5,081,073	+		GFF5090	0.20	-2.4
5,081,073	+		GFF5090	0.20	-0.4
5,081,075	-		GFF5090	0.20	-0.1
5,081,081	-		GFF5090	0.21	-0.5
5,081,081	-		GFF5090	0.21	+0.3
5,081,083	+		GFF5090	0.21	+0.1
5,081,083	+		GFF5090	0.21	-1.2
5,081,083	+		GFF5090	0.21	-1.2
5,081,091	-		GFF5090	0.22	-0.8
5,081,096	-		GFF5090	0.23	-0.6
5,081,106	+		GFF5090	0.24	+0.4
5,081,106	+		GFF5090	0.24	-1.2
5,081,106	+		GFF5090	0.24	-0.8
5,081,106	+		GFF5090	0.24	-1.8
5,081,106	+		GFF5090	0.24	-0.3
5,081,106	+		GFF5090	0.24	-0.6
5,081,106	+		GFF5090	0.24	-1.0
5,081,106	+		GFF5090	0.24	-0.3
5,081,106	+		GFF5090	0.24	-0.5
5,081,106	+		GFF5090	0.24	-0.1
5,081,106	+		GFF5090	0.24	-0.3
5,081,106	+		GFF5090	0.24	-0.2
5,081,106	+		GFF5090	0.24	+0.2
5,081,114	-		GFF5090	0.25	-0.4
5,081,114	-		GFF5090	0.25	+0.3
5,081,114	-		GFF5090	0.25	-0.9
5,081,114	-		GFF5090	0.25	-0.7
5,081,114	-		GFF5090	0.25	+0.9
5,081,114	-		GFF5090	0.25	+0.3
5,081,114	-		GFF5090	0.25	+0.7
5,081,114	-		GFF5090	0.25	-1.4
5,081,114	-		GFF5090	0.25	-2.5
5,081,114	-		GFF5090	0.25	+0.1
5,081,114	-		GFF5090	0.25	-0.5
5,081,114	-		GFF5090	0.25	-0.4
5,081,114	-		GFF5090	0.25	-1.1
5,081,114	-		GFF5090	0.25	+1.0
5,081,114	-		GFF5090	0.25	-1.1
5,081,114	-		GFF5090	0.25	-0.8
5,081,124	-		GFF5090	0.27	+0.9
5,081,132	+		GFF5090	0.28	+0.9
5,081,132	+		GFF5090	0.28	+0.2
5,081,146	-		GFF5090	0.30	+0.8
5,081,187	-		GFF5090	0.35	+1.4
5,081,209	+		GFF5090	0.38	-1.8
5,081,219	+		GFF5090	0.39	-0.4
5,081,249	+		GFF5090	0.43	-1.2
5,081,249	+		GFF5090	0.43	+0.1
5,081,249	+		GFF5090	0.43	-1.7
5,081,249	+		GFF5090	0.43	-0.9
5,081,249	+		GFF5090	0.43	-0.7
5,081,257	-		GFF5090	0.44	-0.0
5,081,257	-		GFF5090	0.44	+0.6
5,081,257	-		GFF5090	0.44	+0.2
5,081,291	-		GFF5090	0.49	-0.1
5,081,291	-		GFF5090	0.49	-1.2
5,081,291	-		GFF5090	0.49	-0.3
5,081,296	-		GFF5090	0.50	-1.0
5,081,326	+		GFF5090	0.54	-0.5
5,081,329	-		GFF5090	0.54	-0.3
5,081,365	+		GFF5090	0.59	-0.9
5,081,373	-		GFF5090	0.60	-0.2
5,081,383	-		GFF5090	0.61	-0.5
5,081,388	-		GFF5090	0.62	-1.0
5,081,438	+		GFF5090	0.69	-0.5
5,081,468	-		GFF5090	0.73	-0.9
5,081,490	-		GFF5090	0.75	+1.1
5,081,491	-		GFF5090	0.76	-1.7
5,081,497	-		GFF5090	0.76	-1.6
5,081,514	-		GFF5090	0.79	-2.5
5,081,523	+		GFF5090	0.80	-0.5
5,081,523	+		GFF5090	0.80	-0.9
5,081,559	+		GFF5090	0.85	-1.8
5,081,577	-		GFF5090	0.87	-0.6
5,081,580	+		GFF5090	0.87	+0.7
5,081,588	-		GFF5090	0.88	-0.2
5,081,588	-		GFF5090	0.88	-1.0
5,081,598	-		GFF5090	0.90	-0.6
5,081,633	+				+0.3
5,081,641	-				-1.5
5,081,641	-				-1.4
5,081,697	-				-0.2
5,081,697	-				-0.6
5,081,702	+				+1.9
5,081,710	-				-1.7
5,081,710	-				-1.3
5,081,710	-				-1.5
5,081,724	-		GFF5091	0.11	-0.2
5,081,785	-		GFF5091	0.23	-0.1
5,081,816	-		GFF5091	0.29	-2.3
5,081,839	+		GFF5091	0.34	-1.6
5,081,839	+		GFF5091	0.34	+0.8
5,081,899	+		GFF5091	0.46	-0.4
5,081,904	+		GFF5091	0.47	-0.1
5,081,907	-		GFF5091	0.47	-0.4
5,081,930	-		GFF5091	0.52	-0.0
5,081,940	+		GFF5091	0.54	-0.7
5,081,942	+		GFF5091	0.54	-1.0
5,081,956	+		GFF5091	0.57	-0.0
5,081,956	+		GFF5091	0.57	-1.0
5,081,956	+		GFF5091	0.57	-1.4
5,081,964	-		GFF5091	0.58	-0.2
5,081,969	-		GFF5091	0.59	+0.1
5,081,976	+		GFF5091	0.61	+0.2
5,081,977	+		GFF5091	0.61	-0.5
5,081,977	+		GFF5091	0.61	-0.4
5,081,977	+		GFF5091	0.61	-2.2
5,082,031	+		GFF5091	0.72	+0.3
5,082,031	+		GFF5091	0.72	+0.8
5,082,031	+		GFF5091	0.72	-1.5
5,082,031	+		GFF5091	0.72	+0.2
5,082,031	+		GFF5091	0.72	-1.2
5,082,031	+		GFF5091	0.72	+0.3
5,082,031	+		GFF5091	0.72	-1.2
5,082,031	+		GFF5091	0.72	-1.1
5,082,031	+		GFF5091	0.72	-1.4
5,082,036	+		GFF5091	0.73	-0.8
5,082,074	-		GFF5091	0.80	-0.4
5,082,079	-		GFF5091	0.81	-0.9
5,082,079	-		GFF5091	0.81	-0.5
5,082,084	-		GFF5091	0.82	+0.9
5,082,085	-		GFF5091	0.83	+0.6
5,082,127	-				-1.1
5,082,212	-		GFF5092	0.18	-2.5
5,082,291	-		GFF5092	0.68	-1.9
5,082,295	+		GFF5092	0.70	+0.2
5,082,298	-		GFF5092	0.72	+0.6
5,082,300	+		GFF5092	0.74	-0.7
5,082,303	-		GFF5092	0.75	+0.9
5,082,322	+		GFF5092	0.87	-2.4
5,082,322	-		GFF5092	0.87	-0.8
5,082,322	-		GFF5092	0.87	-0.1
5,082,374	-				-1.5
5,082,401	-		GFF5093	0.15	-0.1
5,082,417	+		GFF5093	0.23	-1.0
5,082,425	-		GFF5093	0.27	+0.3
5,082,425	-		GFF5093	0.27	-1.0
5,082,425	-		GFF5093	0.27	-0.7
5,082,425	-		GFF5093	0.27	+0.4
5,082,439	+		GFF5093	0.34	-1.2
5,082,476	+		GFF5093	0.52	-2.1
5,082,509	-		GFF5093	0.68	-0.5
5,082,548	+		GFF5093	0.87	-1.7
5,082,608	-				-0.1
5,082,622	-				+0.7
5,082,645	-				-0.7
5,082,645	-				+1.2
5,082,654	-				-1.8
5,082,693	+		GFF5094	0.13	-1.6
5,082,693	+		GFF5094	0.13	-0.5
5,082,701	-		GFF5094	0.15	+0.6
5,082,722	+		GFF5094	0.21	-3.4
5,082,722	+		GFF5094	0.21	+0.2
5,082,722	+		GFF5094	0.21	-0.6
5,082,722	+		GFF5094	0.21	-0.1
5,082,722	+		GFF5094	0.21	-0.5
5,082,722	+		GFF5094	0.21	-1.5
5,082,722	+		GFF5094	0.21	-0.4
5,082,730	-		GFF5094	0.23	+0.5
5,082,730	-		GFF5094	0.23	-0.3
5,082,775	+		GFF5094	0.36	-1.5
5,082,779	-		GFF5094	0.37	+0.2
5,082,805	-		GFF5094	0.44	-0.2
5,082,812	+		GFF5094	0.46	-0.1
5,082,830	+		GFF5094	0.51	+0.0
5,082,830	+		GFF5094	0.51	+0.8
5,082,830	+		GFF5094	0.51	-1.1
5,082,830	+		GFF5094	0.51	-0.8
5,082,830	+		GFF5094	0.51	+0.4
5,082,830	+		GFF5094	0.51	-0.5
5,082,830	+		GFF5094	0.51	+0.3
5,082,830	+		GFF5094	0.51	-0.3
5,082,830	+		GFF5094	0.51	-1.2
5,082,830	+		GFF5094	0.51	-1.2
5,082,830	+		GFF5094	0.51	-1.3
5,082,838	-		GFF5094	0.53	-0.8
5,082,838	-		GFF5094	0.53	-2.5
5,082,838	-		GFF5094	0.53	-1.5
5,082,838	-		GFF5094	0.53	-2.6
5,082,838	-		GFF5094	0.53	-0.9
5,082,838	-		GFF5094	0.53	-2.3
5,082,838	-		GFF5094	0.53	-1.2
5,082,838	-		GFF5094	0.53	-0.2
5,082,892	+		GFF5094	0.68	+0.2
5,082,928	-		GFF5094	0.78	-2.8
5,082,933	-		GFF5094	0.80	-0.5
5,082,954	+		GFF5094	0.86	-0.3
5,083,000	+				+0.1
5,083,011	+				-1.0
5,083,016	+				-1.1
5,083,016	+				+1.2
5,083,024	-				-0.5
5,083,024	-				+0.9
5,083,024	-				+0.0
5,083,053	+				-0.2
5,083,053	+				-2.4
5,083,079	+		GFF5095	0.10	-0.1
5,083,079	+		GFF5095	0.10	-0.4
5,083,081	+		GFF5095	0.10	+0.1
5,083,087	-		GFF5095	0.12	+0.1
5,083,105	+		GFF5095	0.15	-0.3
5,083,105	+		GFF5095	0.15	-0.5
5,083,126	-		GFF5095	0.19	+1.0
5,083,148	+		GFF5095	0.24	-1.0
5,083,156	-		GFF5095	0.25	-1.7
5,083,169	-		GFF5095	0.28	-2.7