Strain Fitness in Sphingobium sp. HT1-2 around GFF5029

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,020,207	-		GFF5027	0.87	+1.3
5,020,207	-		GFF5027	0.87	-2.4
5,020,207	-		GFF5027	0.87	+0.6
5,020,207	-		GFF5027	0.87	-0.2
5,020,207	-		GFF5027	0.87	-0.6
5,020,207	-		GFF5027	0.87	+1.1
5,020,207	-		GFF5027	0.87	+1.5
5,020,209	-		GFF5027	0.88	+0.5
5,020,209	-		GFF5027	0.88	+0.5
5,020,209	-		GFF5027	0.88	+0.1
5,020,209	-		GFF5027	0.88	+0.5
5,020,209	-		GFF5027	0.88	+1.1
5,020,209	-		GFF5027	0.88	-0.7
5,020,209	-		GFF5027	0.88	+0.9
5,020,217	-		GFF5027	0.88	+0.2
5,020,217	-		GFF5027	0.88	+0.2
5,020,224	+		GFF5027	0.89	+0.2
5,020,224	+		GFF5027	0.89	-0.7
5,020,232	-		GFF5027	0.90	+0.0
5,020,242	-				+1.2
5,020,266	-				-1.1
5,020,282	+				+1.5
5,020,284	-				+0.3
5,020,285	-				+0.3
5,020,296	+				-0.6
5,020,296	-				+0.0
5,020,362	-				-1.0
5,020,386	+				+0.9
5,020,386	+				+0.3
5,020,394	-				-1.1
5,020,412	+				-0.8
5,020,412	+				+0.8
5,020,412	+				-0.1
5,020,420	-				+1.7
5,020,420	-				-0.4
5,020,420	-				-1.9
5,020,433	-				+0.7
5,020,438	-				+0.1
5,020,446	-		GFF5028	0.10	+0.3
5,020,489	-		GFF5028	0.16	-0.1
5,020,489	-		GFF5028	0.16	+0.1
5,020,510	+		GFF5028	0.18	+0.6
5,020,510	+		GFF5028	0.18	+1.1
5,020,510	+		GFF5028	0.18	-0.4
5,020,510	+		GFF5028	0.18	-0.2
5,020,510	+		GFF5028	0.18	+1.0
5,020,518	-		GFF5028	0.19	+0.2
5,020,518	-		GFF5028	0.19	+0.3
5,020,518	-		GFF5028	0.19	+1.8
5,020,528	-		GFF5028	0.21	-2.5
5,020,534	+		GFF5028	0.21	+0.2
5,020,534	+		GFF5028	0.21	+1.1
5,020,534	+		GFF5028	0.21	+0.4
5,020,534	+		GFF5028	0.21	+1.2
5,020,542	-		GFF5028	0.22	-0.9
5,020,544	-		GFF5028	0.23	+0.7
5,020,552	-		GFF5028	0.24	+1.0
5,020,577	+		GFF5028	0.27	+0.9
5,020,579	+		GFF5028	0.27	+1.1
5,020,585	-		GFF5028	0.28	-0.4
5,020,587	-		GFF5028	0.28	-0.9
5,020,591	+		GFF5028	0.28	+0.5
5,020,591	+		GFF5028	0.28	-3.0
5,020,599	-		GFF5028	0.29	+0.7
5,020,599	-		GFF5028	0.29	-0.5
5,020,599	-		GFF5028	0.29	-0.7
5,020,599	-		GFF5028	0.29	+0.3
5,020,601	+		GFF5028	0.30	-1.0
5,020,604	-		GFF5028	0.30	+0.4
5,020,604	-		GFF5028	0.30	+1.6
5,020,619	+		GFF5028	0.32	-1.6
5,020,627	-		GFF5028	0.33	-0.3
5,020,632	+		GFF5028	0.33	+0.9
5,020,632	+		GFF5028	0.33	+0.6
5,020,632	-		GFF5028	0.33	-0.3
5,020,635	+		GFF5028	0.34	+0.2
5,020,635	+		GFF5028	0.34	+0.2
5,020,642	-		GFF5028	0.35	+1.0
5,020,660	-		GFF5028	0.37	+1.1
5,020,662	+		GFF5028	0.37	+0.4
5,020,665	+		GFF5028	0.38	+0.3
5,020,665	-		GFF5028	0.38	+0.7
5,020,673	-		GFF5028	0.39	+0.8
5,020,767	-		GFF5028	0.50	+0.4
5,020,775	+		GFF5028	0.51	+1.3
5,020,779	+		GFF5028	0.52	-0.2
5,020,807	-		GFF5028	0.55	-0.5
5,020,889	+		GFF5028	0.65	+0.9
5,020,891	+		GFF5028	0.66	-0.9
5,020,897	-		GFF5028	0.66	+0.4
5,020,897	-		GFF5028	0.66	-0.1
5,020,897	-		GFF5028	0.66	-0.2
5,020,897	-		GFF5028	0.66	+1.4
5,020,899	-		GFF5028	0.67	-2.4
5,020,899	-		GFF5028	0.67	-0.5
5,020,917	-		GFF5028	0.69	+0.2
5,020,923	+		GFF5028	0.70	-2.1
5,020,924	-		GFF5028	0.70	+0.1
5,020,931	-		GFF5028	0.71	-0.9
5,020,941	+		GFF5028	0.72	+0.6
5,020,950	+		GFF5028	0.73	-1.7
5,020,999	-		GFF5028	0.79	-0.2
5,020,999	-		GFF5028	0.79	-0.6
5,020,999	-		GFF5028	0.79	-0.5
5,021,009	-		GFF5028	0.80	+0.7
5,021,025	+		GFF5028	0.82	+0.3
5,021,064	+		GFF5028	0.87	+1.2
5,021,065	-		GFF5028	0.87	+1.2
5,021,072	-		GFF5028	0.88	-0.2
5,021,079	-		GFF5028	0.89	+0.4
5,021,087	+				-0.1
5,021,091	+				-0.8
5,021,095	-				+0.5
5,021,116	-				+1.5
5,021,140	-				+1.4
5,021,145	-				-1.5
5,021,152	+				+0.2
5,021,170	-				-1.6
5,021,191	-				-1.8
5,021,206	-				-0.9
5,021,214	-				+0.1
5,021,214	-				-0.3
5,021,253	-				+1.0
5,021,266	-				-2.4
5,021,273	+				+0.1
5,021,286	-				-1.3
5,021,290	-				-0.3
5,021,292	-				-0.7
5,021,298	+				-0.1
5,021,316	-		GFF5029	0.11	-0.8
5,021,324	-		GFF5029	0.12	+0.2
5,021,326	-		GFF5029	0.12	+0.1
5,021,330	+		GFF5029	0.12	+2.0
5,021,338	-		GFF5029	0.13	+0.7
5,021,338	-		GFF5029	0.13	+0.6
5,021,353	+		GFF5029	0.14	+0.5
5,021,374	+		GFF5029	0.17	-0.3
5,021,388	-		GFF5029	0.18	-0.6
5,021,447	+		GFF5029	0.24	-1.2
5,021,448	+		GFF5029	0.24	-2.2
5,021,523	-		GFF5029	0.31	-1.9
5,021,524	+		GFF5029	0.31	-1.2
5,021,524	+		GFF5029	0.31	+1.6
5,021,532	-		GFF5029	0.32	-1.1
5,021,532	-		GFF5029	0.32	+1.0
5,021,534	+		GFF5029	0.32	+0.9
5,021,534	+		GFF5029	0.32	-1.4
5,021,542	-		GFF5029	0.33	-1.1
5,021,544	+		GFF5029	0.33	-0.6
5,021,547	-		GFF5029	0.34	-0.8
5,021,547	-		GFF5029	0.34	+0.2
5,021,552	-		GFF5029	0.34	+0.4
5,021,552	-		GFF5029	0.34	+1.7
5,021,552	-		GFF5029	0.34	+0.6
5,021,557	-		GFF5029	0.35	-0.3
5,021,557	-		GFF5029	0.35	-0.7
5,021,562	+		GFF5029	0.35	-1.0
5,021,594	-		GFF5029	0.38	+0.9
5,021,612	+		GFF5029	0.40	+0.7
5,021,612	+		GFF5029	0.40	-0.1
5,021,620	-		GFF5029	0.41	+0.1
5,021,626	+		GFF5029	0.42	-0.2
5,021,634	-		GFF5029	0.42	-1.0
5,021,644	+		GFF5029	0.43	-0.2
5,021,665	-		GFF5029	0.45	+0.8
5,021,667	+		GFF5029	0.46	+0.2
5,021,667	+		GFF5029	0.46	-0.4
5,021,675	-		GFF5029	0.46	+0.0
5,021,675	-		GFF5029	0.46	+0.3
5,021,730	-		GFF5029	0.52	+0.6
5,021,744	+		GFF5029	0.53	-1.4
5,021,747	-		GFF5029	0.54	+1.1
5,021,759	+		GFF5029	0.55	+0.1
5,021,767	-		GFF5029	0.56	+0.0
5,021,767	-		GFF5029	0.56	+0.5
5,021,767	-		GFF5029	0.56	-0.8
5,021,767	-		GFF5029	0.56	+1.1
5,021,767	-		GFF5029	0.56	-0.3
5,021,795	+		GFF5029	0.58	+0.6
5,021,799	-		GFF5029	0.59	-2.2
5,021,803	+		GFF5029	0.59	+0.0
5,021,806	+		GFF5029	0.59	+0.7
5,021,808	+		GFF5029	0.60	+0.6
5,021,809	-		GFF5029	0.60	+0.1
5,021,816	-		GFF5029	0.60	-0.3
5,021,816	-		GFF5029	0.60	-0.2
5,021,848	+		GFF5029	0.64	-2.4
5,021,854	+		GFF5029	0.64	+0.5
5,021,855	+		GFF5029	0.64	+0.2
5,021,855	+		GFF5029	0.64	-1.9
5,021,856	-		GFF5029	0.64	+0.0
5,021,863	-		GFF5029	0.65	+0.6
5,021,930	+		GFF5029	0.72	-1.2
5,021,933	-		GFF5029	0.72	-0.5
5,021,941	+		GFF5029	0.73	+0.9
5,021,966	+		GFF5029	0.75	-1.5
5,021,974	-		GFF5029	0.76	-0.1
5,021,974	-		GFF5029	0.76	+0.0
5,021,974	-		GFF5029	0.76	+0.3
5,021,974	-		GFF5029	0.76	+0.0
5,021,974	-		GFF5029	0.76	-1.4
5,021,976	+		GFF5029	0.76	+0.2
5,021,976	+		GFF5029	0.76	-0.2
5,021,976	-		GFF5029	0.76	-0.3
5,021,984	-		GFF5029	0.77	-0.8
5,021,989	-		GFF5029	0.78	-0.3
5,022,027	-		GFF5029	0.81	+0.4
5,022,043	+		GFF5029	0.83	-0.4
5,022,046	-		GFF5029	0.83	+0.7
5,022,061	-		GFF5029	0.85	+0.0
5,022,064	+		GFF5029	0.85	-1.4
5,022,070	+		GFF5029	0.86	-2.2
5,022,071	-		GFF5029	0.86	-0.2
5,022,085	+		GFF5029	0.87	-0.1
5,022,085	+		GFF5029	0.87	-1.4
5,022,085	+		GFF5029	0.87	-2.1
5,022,087	+		GFF5029	0.87	+0.4
5,022,093	-		GFF5029	0.88	-0.2
5,022,093	-		GFF5029	0.88	-0.3
5,022,093	-		GFF5029	0.88	-1.4
5,022,093	-		GFF5029	0.88	-0.5
5,022,093	-		GFF5029	0.88	-0.1
5,022,117	-				-0.6
5,022,121	-				-0.6
5,022,129	-				-0.6
5,022,148	+				-0.3
5,022,148	-				+0.7
5,022,156	-				+0.9
5,022,167	+				-2.5
5,022,238	+				-0.8
5,022,254	+				-0.6
5,022,254	+				-0.4
5,022,262	-				-0.1
5,022,262	-				+0.2
5,022,337	+				+0.3
5,022,345	-				+0.5
5,022,355	+				-0.9
5,022,384	+				+0.7
5,022,384	+				-1.0
5,022,384	+				+0.3
5,022,384	+				+1.1
5,022,392	-				-0.4
5,022,392	-				-0.0
5,022,412	+				-0.6
5,022,422	+				-0.9
5,022,427	+				-1.6
5,022,431	+				+0.4
5,022,431	+				-0.4
5,022,431	+				+0.4
5,022,431	+				+0.6
5,022,431	+				+0.8
5,022,431	+				+0.3
5,022,439	-				+0.7
5,022,439	-				-0.7
5,022,478	+				-0.0
5,022,478	+				-1.1
5,022,478	+				+0.2
5,022,478	+				+0.7
5,022,478	+				+1.0
5,022,478	+				-1.9
5,022,478	+				+0.0
5,022,478	+				-1.4
5,022,478	+				-1.6
5,022,478	+				-2.0
5,022,478	+				+1.0
5,022,478	+				+0.4
5,022,478	+				-0.8
5,022,478	+				-1.1
5,022,478	+				-1.4
5,022,478	+				-1.1
5,022,478	+				+1.7
5,022,478	+				-0.6
5,022,478	+				+0.8
5,022,478	+				+0.2
5,022,478	+				-2.0
5,022,478	+				+0.6
5,022,478	+				-0.4
5,022,483	+				-1.8
5,022,483	+				+0.9
5,022,486	-				-0.7
5,022,486	-				-1.7
5,022,486	-				-0.6
5,022,486	-				+0.6
5,022,486	-				-1.6
5,022,486	-				+1.4
5,022,486	-				+0.3
5,022,486	-				+0.2
5,022,486	-				+1.3
5,022,486	-				-0.6
5,022,486	-				-1.1
5,022,486	-				-0.3
5,022,486	-				+0.1
5,022,486	-				+0.7
5,022,486	-				-1.2
5,022,486	-				+0.2
5,022,486	-				+0.5
5,022,486	-				-0.4
5,022,486	-				-0.7
5,022,486	-				-1.5
5,022,486	-				-0.5
5,022,486	-				+0.6
5,022,486	-				-1.0
5,022,486	-				+1.7
5,022,486	-				-0.8
5,022,486	-				+1.1
5,022,488	+				+1.1
5,022,488	+				+1.0
5,022,496	-				-0.7
5,022,496	-				-0.4
5,022,496	-				-1.4
5,022,500	+				+0.1
5,022,508	-				-1.1
5,022,520	-				+1.3
5,022,531	-				-0.7
5,022,547	+				+0.7
5,022,553	+				+1.4
5,022,553	+				-0.7
5,022,553	+				+0.2
5,022,555	-				+0.3
5,022,557	+				+0.1
5,022,561	-				+0.5
5,022,563	+				+0.7
5,022,563	+				+0.3
5,022,566	-				-0.4
5,022,571	-				+0.5
5,022,574	-				+0.0
5,022,578	-				+0.0
5,022,578	-				-0.1
5,022,578	-				+0.2
5,022,592	+				+0.5
5,022,597	+				-0.9
5,022,599	+		GFF5030	0.10	-0.1
5,022,606	-		GFF5030	0.10	-1.8
5,022,623	+		GFF5030	0.11	+0.1
5,022,628	+		GFF5030	0.11	+1.0
5,022,628	+		GFF5030	0.11	+0.6
5,022,628	+		GFF5030	0.11	+0.7
5,022,631	-		GFF5030	0.11	+0.1
5,022,636	-		GFF5030	0.12	-0.9
5,022,636	-		GFF5030	0.12	+0.9
5,022,636	-		GFF5030	0.12	+0.4
5,022,636	-		GFF5030	0.12	+0.3
5,022,636	-		GFF5030	0.12	+1.3
5,022,679	+		GFF5030	0.13	+0.1
5,022,685	+		GFF5030	0.13	-0.1
5,022,687	-		GFF5030	0.14	+0.3
5,022,780	-		GFF5030	0.17	+0.6
5,022,805	-		GFF5030	0.18	+0.0
5,022,819	+		GFF5030	0.19	+0.1
5,022,832	-		GFF5030	0.19	+0.1
5,022,833	-		GFF5030	0.19	-0.2
5,022,833	-		GFF5030	0.19	-0.6
5,022,847	+		GFF5030	0.20	-0.6
5,022,854	+		GFF5030	0.20	+0.2
5,022,859	+		GFF5030	0.20	-0.6
5,022,875	-		GFF5030	0.21	+0.8
5,022,885	+		GFF5030	0.21	+0.3
5,022,893	-		GFF5030	0.22	-0.6
5,022,893	-		GFF5030	0.22	-0.1
5,022,893	-		GFF5030	0.22	+0.1
5,022,895	+		GFF5030	0.22	+1.1
5,022,899	-		GFF5030	0.22	+1.4
5,022,904	-		GFF5030	0.22	-0.2
5,022,906	+		GFF5030	0.22	+0.0
5,022,906	+		GFF5030	0.22	+0.4
5,022,917	+		GFF5030	0.23	-0.3
5,022,920	-		GFF5030	0.23	+0.5
5,022,931	-		GFF5030	0.23	+0.3
5,022,940	-		GFF5030	0.24	+0.7
5,022,940	-		GFF5030	0.24	-0.8
5,022,947	+		GFF5030	0.24	+0.9
5,022,950	-		GFF5030	0.24	+0.7
5,022,967	+		GFF5030	0.25	+0.0
5,022,967	+		GFF5030	0.25	-0.6
5,022,967	+		GFF5030	0.25	+0.7
5,022,967	+		GFF5030	0.25	-0.2
5,022,970	-		GFF5030	0.25	+0.2
5,022,970	-		GFF5030	0.25	-2.4
5,022,975	-		GFF5030	0.25	+0.6
5,022,995	+		GFF5030	0.26	+1.4
5,023,039	+		GFF5030	0.28	-0.9
5,023,039	+		GFF5030	0.28	+0.8
5,023,039	+		GFF5030	0.28	+0.6
5,023,039	+		GFF5030	0.28	-0.7
5,023,039	+		GFF5030	0.28	+0.8
5,023,039	+		GFF5030	0.28	+0.2
5,023,047	-		GFF5030	0.28	+0.6
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