Strain Fitness in Sphingobium sp. HT1-2 around GFF5022

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,013,362	+				-0.4
5,013,369	-				+0.6
5,013,398	+				+1.7
5,013,406	-				-1.3
5,013,440	-				+0.2
5,013,445	-				+1.1
5,013,458	-				-0.5
5,013,462	+				-0.9
5,013,462	+				-0.4
5,013,466	-				+1.0
5,013,467	+				+0.3
5,013,467	+				+0.3
5,013,467	+				+0.1
5,013,470	-				-1.0
5,013,475	-				-0.3
5,013,475	-				-0.3
5,013,475	-				+0.6
5,013,500	-				+0.2
5,013,528	+				+0.9
5,013,545	+				-0.3
5,013,548	+				+0.4
5,013,548	+				-0.4
5,013,550	+				+0.6
5,013,550	+				+0.5
5,013,550	+				-0.6
5,013,550	+				+0.8
5,013,552	+				+0.7
5,013,556	-				-0.2
5,013,556	-				-1.7
5,013,556	-				+0.8
5,013,558	-				+1.0
5,013,584	+				+1.1
5,013,586	+				+0.7
5,013,593	-				+0.0
5,013,600	+		GFF5020	0.12	+1.2
5,013,600	+		GFF5020	0.12	-0.8
5,013,605	+		GFF5020	0.14	+0.7
5,013,608	-		GFF5020	0.15	+1.1
5,013,608	-		GFF5020	0.15	-0.1
5,013,608	-		GFF5020	0.15	+1.2
5,013,608	-		GFF5020	0.15	-1.5
5,013,608	-		GFF5020	0.15	+1.0
5,013,610	+		GFF5020	0.16	+1.6
5,013,615	+		GFF5020	0.18	-0.3
5,013,631	+		GFF5020	0.24	-0.3
5,013,651	-		GFF5020	0.31	+0.3
5,013,703	-		GFF5020	0.50	-0.1
5,013,703	-		GFF5020	0.50	+0.1
5,013,703	-		GFF5020	0.50	-0.0
5,013,718	+		GFF5020	0.56	+1.6
5,013,725	-		GFF5020	0.59	-0.5
5,013,725	-		GFF5020	0.59	-0.1
5,013,725	-		GFF5020	0.59	+0.7
5,013,725	-		GFF5020	0.59	+1.5
5,013,749	-		GFF5020	0.67	+0.4
5,013,763	+		GFF5020	0.73	-0.2
5,013,766	-		GFF5020	0.74	-0.0
5,013,802	+		GFF5020	0.87	+0.3
5,013,815	+				+0.5
5,013,831	+				+0.9
5,013,834	-				-1.1
5,013,860	-		GFF5021	0.11	+1.0
5,013,861	+		GFF5021	0.12	-2.5
5,013,863	-		GFF5021	0.13	-1.1
5,013,869	-		GFF5021	0.15	+0.4
5,013,889	-		GFF5021	0.24	+1.0
5,013,898	-		GFF5021	0.27	+0.6
5,013,907	-		GFF5021	0.31	+0.5
5,013,926	-		GFF5021	0.39	-0.7
5,013,937	+		GFF5021	0.44	+1.7
5,013,937	+		GFF5021	0.44	-0.8
5,013,937	+		GFF5021	0.44	+1.3
5,013,937	+		GFF5021	0.44	-0.7
5,013,937	+		GFF5021	0.44	-1.6
5,013,940	-		GFF5021	0.45	-1.7
5,013,945	-		GFF5021	0.47	+1.9
5,013,945	-		GFF5021	0.47	+0.8
5,013,945	-		GFF5021	0.47	-1.9
5,014,003	-		GFF5021	0.72	-2.0
5,014,029	+		GFF5021	0.83	-1.4
5,014,030	+		GFF5021	0.83	-0.8
5,014,039	+		GFF5021	0.87	-0.8
5,014,039	+		GFF5021	0.87	+0.1
5,014,039	+		GFF5021	0.87	+0.3
5,014,039	-		GFF5021	0.87	+0.7
5,014,047	-				+0.9
5,014,047	-				+0.5
5,014,071	+				+0.3
5,014,214	-				-0.0
5,014,274	+				-0.0
5,014,287	-				+0.5
5,014,354	-				-0.6
5,014,356	+				-0.9
5,014,361	-				-0.4
5,014,364	-				-0.9
5,014,371	-				+0.6
5,014,374	-		GFF5022	0.10	+0.7
5,014,419	+		GFF5022	0.25	-0.2
5,014,419	+		GFF5022	0.25	+0.5
5,014,419	-		GFF5022	0.25	+0.5
5,014,419	-		GFF5022	0.25	+0.2
5,014,452	+		GFF5022	0.35	+0.6
5,014,471	+		GFF5022	0.41	-0.7
5,014,476	+		GFF5022	0.43	+1.0
5,014,476	+		GFF5022	0.43	+0.1
5,014,476	+		GFF5022	0.43	+1.1
5,014,479	-		GFF5022	0.44	-1.7
5,014,484	-		GFF5022	0.45	-0.6
5,014,609	+		GFF5022	0.85	-2.6
5,014,609	+		GFF5022	0.85	-0.3
5,014,617	-		GFF5022	0.88	-0.6
5,014,625	+				+1.0
5,014,630	+				+1.5
5,014,633	-				+0.3
5,014,633	-				+0.4
5,014,633	-				+2.4
5,014,633	-				-0.1
5,014,635	+				-2.3
5,014,636	+				+0.4
5,014,669	+				+0.3
5,014,669	+				+1.1
5,014,669	+				+1.1
5,014,670	+				-0.1
5,014,670	+				-1.7
5,014,677	-				-0.3
5,014,747	+				-2.0
5,014,759	-				+0.3
5,014,764	-				-0.3
5,014,766	-				+0.3
5,014,769	-				+0.9
5,014,774	+				-1.6
5,014,779	+				+0.4
5,014,779	+				-0.5
5,014,779	+				-1.8
5,014,779	+				+1.1
5,014,782	-				+0.1
5,014,787	+				-0.8
5,014,787	-				+1.5
5,014,789	+				-0.9
5,014,792	-				-0.7
5,014,795	-				-0.8
5,014,795	-				-1.0
5,014,797	-				+0.1
5,014,813	-				+1.3
5,014,857	-				+0.4
5,014,859	-				-0.8
5,014,876	-		GFF5023	0.10	-0.2
5,014,881	-		GFF5023	0.10	+0.3
5,014,932	+		GFF5023	0.14	-1.1
5,014,932	+		GFF5023	0.14	-1.1
5,014,932	+		GFF5023	0.14	-0.1
5,014,932	+		GFF5023	0.14	-1.8
5,014,934	-		GFF5023	0.14	-0.8
5,014,951	-		GFF5023	0.15	-0.4
5,014,971	-		GFF5023	0.16	+0.4
5,014,976	+		GFF5023	0.16	+1.0
5,014,976	+		GFF5023	0.16	-0.3
5,014,978	+		GFF5023	0.16	-0.3
5,014,978	+		GFF5023	0.16	+0.3
5,014,984	-		GFF5023	0.17	+0.2
5,014,984	-		GFF5023	0.17	+1.5
5,014,990	+		GFF5023	0.17	-0.6
5,014,993	-		GFF5023	0.17	-0.7
5,015,017	+		GFF5023	0.19	+1.6
5,015,018	+		GFF5023	0.19	+1.0
5,015,025	-		GFF5023	0.19	-0.3
5,015,037	-		GFF5023	0.20	+0.2
5,015,047	-		GFF5023	0.21	-1.1
5,015,055	+		GFF5023	0.21	-0.2
5,015,100	+		GFF5023	0.24	+0.4
5,015,100	+		GFF5023	0.24	+1.3
5,015,108	-		GFF5023	0.24	+0.6
5,015,129	-		GFF5023	0.26	-0.7
5,015,148	+		GFF5023	0.27	-0.1
5,015,156	-		GFF5023	0.27	+0.1
5,015,175	+		GFF5023	0.29	-0.8
5,015,222	-		GFF5023	0.31	+0.8
5,015,227	+		GFF5023	0.32	+0.8
5,015,227	+		GFF5023	0.32	-0.1
5,015,248	+		GFF5023	0.33	-1.6
5,015,248	+		GFF5023	0.33	-0.8
5,015,248	+		GFF5023	0.33	+1.0
5,015,248	+		GFF5023	0.33	-1.2
5,015,256	-		GFF5023	0.34	+0.2
5,015,256	-		GFF5023	0.34	-0.2
5,015,273	+		GFF5023	0.35	-1.1
5,015,275	+		GFF5023	0.35	+1.4
5,015,276	-		GFF5023	0.35	+0.2
5,015,284	-		GFF5023	0.35	-0.2
5,015,300	-		GFF5023	0.36	+0.8
5,015,301	+		GFF5023	0.36	+1.5
5,015,340	+		GFF5023	0.39	-1.9
5,015,340	+		GFF5023	0.39	-1.1
5,015,340	+		GFF5023	0.39	-0.1
5,015,340	+		GFF5023	0.39	-0.6
5,015,340	+		GFF5023	0.39	+1.2
5,015,348	-		GFF5023	0.39	+0.5
5,015,348	-		GFF5023	0.39	-0.1
5,015,348	-		GFF5023	0.39	+0.6
5,015,438	-		GFF5023	0.45	+0.6
5,015,438	-		GFF5023	0.45	-0.9
5,015,456	+		GFF5023	0.46	+0.3
5,015,457	-		GFF5023	0.46	+0.8
5,015,462	-		GFF5023	0.46	-0.3
5,015,462	-		GFF5023	0.46	-0.6
5,015,469	+		GFF5023	0.47	-0.4
5,015,469	-		GFF5023	0.47	+0.9
5,015,470	+		GFF5023	0.47	-0.1
5,015,477	-		GFF5023	0.47	+1.4
5,015,477	-		GFF5023	0.47	+0.7
5,015,526	-		GFF5023	0.50	+0.5
5,015,527	-		GFF5023	0.50	+1.0
5,015,527	-		GFF5023	0.50	+0.7
5,015,534	-		GFF5023	0.51	+0.7
5,015,549	+		GFF5023	0.52	-0.2
5,015,575	+		GFF5023	0.53	-0.6
5,015,575	+		GFF5023	0.53	-1.3
5,015,575	-		GFF5023	0.53	-0.3
5,015,583	-		GFF5023	0.54	-1.1
5,015,583	-		GFF5023	0.54	-0.1
5,015,604	-		GFF5023	0.55	-0.7
5,015,622	+		GFF5023	0.56	-0.4
5,015,622	+		GFF5023	0.56	+1.1