Strain Fitness in Sphingobium sp. HT1-2 around GFF5008

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,001,188	-		GFF5007	0.35	-0.3
5,001,188	-		GFF5007	0.35	+0.8
5,001,203	+		GFF5007	0.36	+1.0
5,001,204	+		GFF5007	0.36	-2.0
5,001,212	-		GFF5007	0.36	+0.8
5,001,236	-		GFF5007	0.38	+0.6
5,001,250	+		GFF5007	0.39	+1.4
5,001,251	+		GFF5007	0.39	-1.0
5,001,258	-		GFF5007	0.39	-0.0
5,001,270	+		GFF5007	0.40	-2.0
5,001,271	+		GFF5007	0.40	-0.0
5,001,279	-		GFF5007	0.41	-0.2
5,001,282	+		GFF5007	0.41	+0.6
5,001,282	+		GFF5007	0.41	-0.2
5,001,282	+		GFF5007	0.41	-0.2
5,001,287	+		GFF5007	0.41	+0.1
5,001,290	-		GFF5007	0.41	-1.3
5,001,300	+		GFF5007	0.42	+0.4
5,001,308	-		GFF5007	0.43	+0.7
5,001,332	+		GFF5007	0.44	+1.4
5,001,332	+		GFF5007	0.44	+1.4
5,001,340	-		GFF5007	0.45	+0.5
5,001,340	-		GFF5007	0.45	-0.5
5,001,341	-		GFF5007	0.45	+1.9
5,001,342	+		GFF5007	0.45	+1.0
5,001,388	-		GFF5007	0.48	-0.0
5,001,448	+		GFF5007	0.52	+2.0
5,001,458	-		GFF5007	0.52	+0.4
5,001,485	+		GFF5007	0.54	+1.0
5,001,485	+		GFF5007	0.54	-0.2
5,001,485	+		GFF5007	0.54	+0.3
5,001,503	+		GFF5007	0.55	-0.1
5,001,503	+		GFF5007	0.55	+0.8
5,001,503	+		GFF5007	0.55	+0.4
5,001,503	+		GFF5007	0.55	-0.5
5,001,503	+		GFF5007	0.55	+0.7
5,001,503	+		GFF5007	0.55	-0.8
5,001,511	-		GFF5007	0.56	+2.1
5,001,511	-		GFF5007	0.56	+0.5
5,001,511	-		GFF5007	0.56	-0.2
5,001,511	-		GFF5007	0.56	-0.6
5,001,511	-		GFF5007	0.56	-0.0
5,001,511	-		GFF5007	0.56	+2.7
5,001,511	-		GFF5007	0.56	+0.6
5,001,521	-		GFF5007	0.56	+1.0
5,001,541	-		GFF5007	0.58	+0.1
5,001,595	-		GFF5007	0.61	+0.2
5,001,612	-		GFF5007	0.62	-1.8
5,001,629	-		GFF5007	0.63	+0.1
5,001,629	-		GFF5007	0.63	-1.3
5,001,629	-		GFF5007	0.63	+1.2
5,001,631	+		GFF5007	0.64	+0.1
5,001,638	-		GFF5007	0.64	+0.3
5,001,646	-		GFF5007	0.65	+0.9
5,001,682	-		GFF5007	0.67	+0.4
5,001,720	+		GFF5007	0.69	-0.7
5,001,720	+		GFF5007	0.69	+0.6
5,001,786	+		GFF5007	0.74	+1.2
5,001,794	-		GFF5007	0.74	+0.8
5,001,806	-		GFF5007	0.75	+1.2
5,001,806	-		GFF5007	0.75	-0.3
5,001,832	+		GFF5007	0.77	+2.4
5,001,832	+		GFF5007	0.77	+0.3
5,001,832	+		GFF5007	0.77	-1.3
5,001,832	+		GFF5007	0.77	+0.8
5,001,832	+		GFF5007	0.77	+0.1
5,001,832	+		GFF5007	0.77	+1.4
5,001,832	+		GFF5007	0.77	+0.7
5,001,832	+		GFF5007	0.77	+0.7
5,001,834	+		GFF5007	0.77	+0.7
5,001,840	-		GFF5007	0.77	-1.5
5,001,840	-		GFF5007	0.77	+1.1
5,001,840	-		GFF5007	0.77	+1.8
5,001,840	-		GFF5007	0.77	+0.1
5,001,840	-		GFF5007	0.77	+2.3
5,001,840	-		GFF5007	0.77	-0.1
5,001,840	-		GFF5007	0.77	+1.7
5,001,840	-		GFF5007	0.77	+1.7
5,001,841	-		GFF5007	0.77	+0.0
5,001,909	-		GFF5007	0.82	+0.1
5,001,909	-		GFF5007	0.82	-0.9
5,001,909	-		GFF5007	0.82	+0.4
5,001,945	+		GFF5007	0.84	-1.3
5,001,953	-		GFF5007	0.84	-0.4
5,001,970	+		GFF5007	0.86	+0.8
5,001,972	+		GFF5007	0.86	-0.9
5,002,014	+		GFF5007	0.88	-0.2
5,002,032	+		GFF5007	0.90	+0.1
5,002,032	+		GFF5007	0.90	+0.8
5,002,040	-				+1.4
5,002,051	+				+1.3
5,002,051	+				+1.4
5,002,054	+				+0.3
5,002,054	+				+1.6
5,002,062	-				-0.2
5,002,062	-				+0.5
5,002,072	-				+1.1
5,002,090	+				-0.1
5,002,098	+				-0.7
5,002,098	+				+0.3
5,002,139	-				-0.3
5,002,153	-				-1.7
5,002,193	-				+0.8
5,002,214	+				+0.5
5,002,214	+				-0.3
5,002,214	+				+1.3
5,002,214	+				-2.3
5,002,231	+				+1.3
5,002,258	+				+0.0
5,002,265	+				+1.6
5,002,266	-				+0.1
5,002,273	-				+0.7
5,002,305	+		GFF5008	0.13	-2.2
5,002,342	+		GFF5008	0.17	-0.9
5,002,342	+		GFF5008	0.17	+0.9
5,002,350	-		GFF5008	0.18	+0.7
5,002,352	+		GFF5008	0.18	+2.7
5,002,355	+		GFF5008	0.18	-1.2
5,002,355	+		GFF5008	0.18	+0.8
5,002,355	+		GFF5008	0.18	-0.3
5,002,355	-		GFF5008	0.18	+1.1
5,002,358	-		GFF5008	0.19	-0.8
5,002,363	-		GFF5008	0.19	-0.7
5,002,368	-		GFF5008	0.20	+0.4
5,002,393	-		GFF5008	0.23	+0.9
5,002,394	+		GFF5008	0.23	+0.4
5,002,435	+		GFF5008	0.27	+1.3
5,002,435	+		GFF5008	0.27	+1.1
5,002,437	+		GFF5008	0.28	+0.2
5,002,443	-		GFF5008	0.28	-2.0
5,002,443	-		GFF5008	0.28	-0.5
5,002,443	-		GFF5008	0.28	+2.0
5,002,460	+		GFF5008	0.30	-0.7
5,002,516	+		GFF5008	0.36	+1.8
5,002,516	+		GFF5008	0.36	+1.1
5,002,516	+		GFF5008	0.36	-0.2
5,002,516	+		GFF5008	0.36	-0.8
5,002,516	+		GFF5008	0.36	+0.4
5,002,524	-		GFF5008	0.37	+0.5
5,002,524	-		GFF5008	0.37	-0.3
5,002,531	+		GFF5008	0.38	+1.4
5,002,540	-		GFF5008	0.39	+0.5
5,002,549	+		GFF5008	0.40	+0.7
5,002,549	+		GFF5008	0.40	-0.3
5,002,553	+		GFF5008	0.40	+0.0
5,002,553	+		GFF5008	0.40	-0.8
5,002,557	-		GFF5008	0.41	-0.3
5,002,561	-		GFF5008	0.41	-0.1
5,002,561	-		GFF5008	0.41	+2.0
5,002,561	-		GFF5008	0.41	-0.5
5,002,571	+		GFF5008	0.42	+1.0
5,002,592	-		GFF5008	0.45	-0.0
5,002,595	-		GFF5008	0.45	+1.3
5,002,617	-		GFF5008	0.48	+0.4
5,002,626	-		GFF5008	0.49	-1.5
5,002,626	-		GFF5008	0.49	-0.7
5,002,645	-		GFF5008	0.51	+0.5
5,002,666	-		GFF5008	0.53	+0.8
5,002,702	+		GFF5008	0.57	+1.3
5,002,961	+		GFF5008	0.86	+2.0
5,002,962	+		GFF5008	0.86	-1.2
5,002,967	+		GFF5008	0.86	+2.7
5,002,969	-		GFF5008	0.86	+0.1
5,002,969	-		GFF5008	0.86	-0.3
5,002,969	-		GFF5008	0.86	+0.5
5,002,969	-		GFF5008	0.86	+1.0
5,002,969	-		GFF5008	0.86	-1.0
5,003,038	-				-0.5
5,003,138	+				+1.4
5,003,169	+				+0.8
5,003,227	-				+0.4
5,003,241	-				+0.7
5,003,308	-				+0.9
5,003,402	-				+0.2
5,003,494	+				+0.1
5,003,499	+				-0.4
5,003,499	+				+2.9
5,003,608	+				-0.7
5,003,659	+				+1.1
5,003,781	+				+0.6
5,003,786	+				+1.6
5,003,800	+				+0.6
5,003,815	+				+1.7
5,003,846	+				-0.1
5,003,853	+				-0.7
5,003,854	-				-0.1
5,003,859	+				+0.5
5,003,887	-		GFF5009	0.16	-0.5
5,003,887	-		GFF5009	0.16	+0.3
5,003,889	-		GFF5009	0.16	-0.4
5,003,909	-		GFF5009	0.20	-0.2
5,003,930	+		GFF5009	0.24	+2.6
5,003,930	+		GFF5009	0.24	+0.3
5,004,013	+		GFF5009	0.42	-1.5
5,004,032	+		GFF5009	0.46	-1.0
5,004,047	+		GFF5009	0.49	+0.1
5,004,047	+		GFF5009	0.49	+0.5
5,004,047	+		GFF5009	0.49	+0.7
5,004,047	+		GFF5009	0.49	+0.3
5,004,047	+		GFF5009	0.49	+0.2
5,004,047	+		GFF5009	0.49	-0.7
5,004,055	-		GFF5009	0.50	+0.2
5,004,055	-		GFF5009	0.50	-0.5
5,004,065	-		GFF5009	0.52	+0.3
5,004,083	+		GFF5009	0.56	+2.1
5,004,085	-		GFF5009	0.57	-1.2