Strain Fitness in Sphingobium sp. HT1-2 around GFF4961

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,956,265	-		GFF4959	0.50	-0.3
4,956,265	-		GFF4959	0.50	+0.9
4,956,265	-		GFF4959	0.50	-0.3
4,956,265	-		GFF4959	0.50	+1.6
4,956,267	+		GFF4959	0.51	-1.4
4,956,272	+		GFF4959	0.52	-0.1
4,956,275	-		GFF4959	0.52	-1.8
4,956,281	+		GFF4959	0.53	-1.3
4,956,291	+		GFF4959	0.55	-1.2
4,956,299	-		GFF4959	0.56	-2.3
4,956,299	-		GFF4959	0.56	-1.5
4,956,312	+		GFF4959	0.59	-1.1
4,956,320	-		GFF4959	0.60	-0.9
4,956,320	-		GFF4959	0.60	-1.5
4,956,320	-		GFF4959	0.60	+0.6
4,956,325	+		GFF4959	0.61	-0.8
4,956,325	+		GFF4959	0.61	-0.3
4,956,325	+		GFF4959	0.61	-1.2
4,956,330	+		GFF4959	0.62	-0.1
4,956,333	-		GFF4959	0.62	+0.4
4,956,333	-		GFF4959	0.62	+1.2
4,956,333	-		GFF4959	0.62	-0.8
4,956,333	-		GFF4959	0.62	+0.5
4,956,333	-		GFF4959	0.62	-1.0
4,956,333	-		GFF4959	0.62	+0.1
4,956,333	-		GFF4959	0.62	-0.1
4,956,333	-		GFF4959	0.62	-0.2
4,956,333	-		GFF4959	0.62	-0.8
4,956,333	-		GFF4959	0.62	-2.1
4,956,333	-		GFF4959	0.62	-0.4
4,956,333	-		GFF4959	0.62	-0.1
4,956,333	-		GFF4959	0.62	-2.5
4,956,333	-		GFF4959	0.62	+0.1
4,956,333	-		GFF4959	0.62	-0.7
4,956,333	-		GFF4959	0.62	-2.2
4,956,333	-		GFF4959	0.62	-0.1
4,956,339	+		GFF4959	0.63	-1.1
4,956,340	+		GFF4959	0.64	-0.2
4,956,348	-		GFF4959	0.65	+0.8
4,956,348	-		GFF4959	0.65	-1.7
4,956,371	+		GFF4959	0.69	-0.1
4,956,371	+		GFF4959	0.69	-1.4
4,956,371	-		GFF4959	0.69	+0.4
4,956,372	-		GFF4959	0.69	-0.7
4,956,379	-		GFF4959	0.71	-1.2
4,956,379	-		GFF4959	0.71	-0.1
4,956,398	+		GFF4959	0.74	-2.1
4,956,398	+		GFF4959	0.74	-2.3
4,956,406	-		GFF4959	0.75	+0.7
4,956,406	-		GFF4959	0.75	-1.2
4,956,406	-		GFF4959	0.75	-0.8
4,956,417	+		GFF4959	0.77	-0.9
4,956,425	-		GFF4959	0.79	-0.1
4,956,425	-		GFF4959	0.79	-1.3
4,956,425	-		GFF4959	0.79	+0.8
4,956,464	-		GFF4959	0.86	-1.3
4,956,479	+		GFF4959	0.88	+0.8
4,956,481	+		GFF4959	0.89	-2.7
4,956,483	+		GFF4959	0.89	-0.3
4,956,514	-				-2.1
4,956,529	-				-0.9
4,956,559	-				-0.2
4,956,575	-				+0.3
4,956,600	-				-0.3
4,956,622	+				+0.4
4,956,628	+				-1.9
4,956,637	+				-0.2
4,956,667	+				-1.8
4,956,672	+				+0.0
4,956,672	+				+0.1
4,956,672	+				-0.2
4,956,672	+				-0.4
4,956,672	+				-1.8
4,956,672	+				-2.7
4,956,672	+				+0.8
4,956,672	+				-0.1
4,956,672	+				-1.5
4,956,672	+				-0.5
4,956,680	-				-1.1
4,956,680	-				+0.2
4,956,680	-				-1.2
4,956,680	-				-1.1
4,956,680	-				-2.6
4,956,680	-				-1.6
4,956,680	-				-1.3
4,956,684	+				-1.1
4,956,684	+				-0.8
4,956,693	-				-0.2
4,956,693	-				+0.2
4,956,693	-				-1.6
4,956,693	-				-0.4
4,956,696	+				-0.7
4,956,696	+				+0.5
4,956,696	+				-0.9
4,956,702	+				-0.5
4,956,702	+				-0.8
4,956,702	+				+0.3
4,956,703	-				-0.5
4,956,704	-				-1.5
4,956,704	-				-0.6
4,956,704	-				-0.8
4,956,710	-				-1.1
4,956,710	-				-2.4
4,956,710	-				-1.2
4,956,712	-				-0.1
4,956,719	+				-0.7
4,956,727	-				+0.7
4,956,757	-		GFF4960	0.14	-1.3
4,956,784	+		GFF4960	0.20	-0.2
4,956,784	+		GFF4960	0.20	-0.9
4,956,784	+		GFF4960	0.20	-1.2
4,956,792	-		GFF4960	0.22	+0.0
4,956,799	-		GFF4960	0.23	+0.3
4,956,799	-		GFF4960	0.23	-1.0
4,956,818	+		GFF4960	0.27	-0.3
4,956,818	+		GFF4960	0.27	-0.5
4,956,831	-		GFF4960	0.30	-1.4
4,956,831	-		GFF4960	0.30	-0.4
4,956,841	-		GFF4960	0.32	-0.5
4,956,866	+		GFF4960	0.37	-1.8
4,956,875	-		GFF4960	0.39	-0.2
4,956,882	+		GFF4960	0.40	+0.5
4,956,882	+		GFF4960	0.40	+0.3
4,956,882	-		GFF4960	0.40	-0.3
4,956,882	-		GFF4960	0.40	-1.0
4,956,883	-		GFF4960	0.40	-0.9
4,956,884	-		GFF4960	0.41	-0.9
4,956,885	-		GFF4960	0.41	-1.1
4,956,888	+		GFF4960	0.41	-0.4
4,956,890	-		GFF4960	0.42	+0.6
4,956,890	-		GFF4960	0.42	-0.7
4,956,903	+		GFF4960	0.45	-0.9
4,956,992	-		GFF4960	0.63	-0.9
4,957,011	+		GFF4960	0.67	-0.4
4,957,013	+		GFF4960	0.67	-0.5
4,957,013	+		GFF4960	0.67	-1.5
4,957,013	+		GFF4960	0.67	-2.3
4,957,018	+		GFF4960	0.68	+0.6
4,957,018	+		GFF4960	0.68	+0.5
4,957,021	-		GFF4960	0.69	-2.0
4,957,023	+		GFF4960	0.69	-1.6
4,957,025	+		GFF4960	0.70	-0.3
4,957,026	-		GFF4960	0.70	-0.3
4,957,031	-		GFF4960	0.71	-2.2
4,957,040	+		GFF4960	0.73	-1.7
4,957,046	+		GFF4960	0.74	-0.7
4,957,046	+		GFF4960	0.74	-0.1
4,957,046	+		GFF4960	0.74	+0.0
4,957,046	+		GFF4960	0.74	-0.9
4,957,054	-		GFF4960	0.76	+0.0
4,957,054	-		GFF4960	0.76	-1.9
4,957,055	+		GFF4960	0.76	-0.8
4,957,055	+		GFF4960	0.76	-1.1
4,957,060	+		GFF4960	0.77	-1.1
4,957,079	+		GFF4960	0.81	-0.7
4,957,089	-		GFF4960	0.83	-1.6
4,957,089	-		GFF4960	0.83	-0.4
4,957,094	-		GFF4960	0.84	-1.1
4,957,120	+		GFF4960	0.89	-0.5
4,957,135	-				-1.2
4,957,137	+				-0.7
4,957,137	+				-0.4
4,957,147	-				-1.0
4,957,149	+				-2.6
4,957,172	-				-2.1
4,957,210	+				-0.2
4,957,210	+				-0.1
4,957,243	-				-1.2
4,957,275	+				-0.9
4,957,280	-				-0.2
4,958,719	+				+0.4
4,958,727	-				-0.8
4,958,740	+				-0.8
4,958,753	+				-0.8
4,958,757	-				-0.3
4,958,774	-				-0.5
4,958,776	+				-0.0
4,958,794	-				-1.4
4,958,794	-				-0.5
4,958,794	-				-0.4
4,958,794	-				-2.6
4,958,794	-				-0.9
4,958,833	+				-1.2
4,958,841	-				+0.2
4,958,846	-				-1.6
4,958,856	-				-0.2
4,958,878	+		GFF4962	0.11	+0.2
4,958,878	+		GFF4962	0.11	-1.5
4,958,886	-		GFF4962	0.11	+0.3
4,958,901	+		GFF4962	0.13	-0.3
4,958,910	+		GFF4962	0.13	-1.5
4,958,916	+		GFF4962	0.14	-0.1
4,958,938	-		GFF4962	0.16	-0.7
4,958,964	+		GFF4962	0.18	-0.3
4,958,964	+		GFF4962	0.18	-1.8
4,958,964	+		GFF4962	0.18	-1.6
4,958,964	+		GFF4962	0.18	-2.1
4,958,971	+		GFF4962	0.19	+1.0
4,958,971	+		GFF4962	0.19	-0.1
4,958,972	-		GFF4962	0.19	-0.2
4,958,972	-		GFF4962	0.19	-2.6
4,958,974	+		GFF4962	0.19	-0.3
4,958,979	-		GFF4962	0.19	-1.7
4,958,984	-		GFF4962	0.20	+0.3
4,958,993	-		GFF4962	0.21	-0.1
4,959,026	+		GFF4962	0.23	+0.1
4,959,028	+		GFF4962	0.24	-1.9
4,959,038	+		GFF4962	0.25	-1.1
4,959,039	-		GFF4962	0.25	+1.1
4,959,046	-		GFF4962	0.25	-1.1
4,959,048	+		GFF4962	0.25	+0.4
4,959,048	+		GFF4962	0.25	-1.4
4,959,094	+		GFF4962	0.29	-0.3
4,959,122	+		GFF4962	0.32	+0.7
4,959,129	-		GFF4962	0.32	+0.8
4,959,136	+		GFF4962	0.33	-0.1
4,959,136	+		GFF4962	0.33	+0.5
4,959,136	+		GFF4962	0.33	-0.5
4,959,144	-		GFF4962	0.34	-1.2
4,959,154	-		GFF4962	0.35	-2.2
4,959,154	-		GFF4962	0.35	+0.0
4,959,177	+		GFF4962	0.37	-1.6
4,959,205	+		GFF4962	0.39	-1.4
4,959,205	+		GFF4962	0.39	-0.9
4,959,211	-		GFF4962	0.40	-1.1
4,959,213	-		GFF4962	0.40	-1.5
4,959,226	+		GFF4962	0.41	-0.2
4,959,259	+		GFF4962	0.44	-2.4
4,959,266	-		GFF4962	0.44	-1.1
4,959,282	+		GFF4962	0.46	-0.2
4,959,300	+		GFF4962	0.47	+0.2
4,959,341	+		GFF4962	0.51	+0.2
4,959,348	-		GFF4962	0.52	-0.3
4,959,363	+		GFF4962	0.53	-0.4
4,959,363	+		GFF4962	0.53	-0.5
4,959,371	-		GFF4962	0.54	+1.2
4,959,371	-		GFF4962	0.54	-3.0
4,959,373	+		GFF4962	0.54	+1.1
4,959,373	+		GFF4962	0.54	-1.8
4,959,373	+		GFF4962	0.54	-1.6
4,959,381	-		GFF4962	0.54	-0.3
4,959,381	-		GFF4962	0.54	-0.5
4,959,381	-		GFF4962	0.54	+0.4
4,959,381	-		GFF4962	0.54	-2.3
4,959,386	+		GFF4962	0.55	-1.8
4,959,386	+		GFF4962	0.55	-0.9
4,959,386	+		GFF4962	0.55	-0.5
4,959,386	+		GFF4962	0.55	+1.1
4,959,394	-		GFF4962	0.56	-0.2
4,959,394	-		GFF4962	0.56	-0.4
4,959,394	-		GFF4962	0.56	-0.8
4,959,394	-		GFF4962	0.56	-2.1
4,959,394	-		GFF4962	0.56	-0.5
4,959,399	+		GFF4962	0.56	-0.8
4,959,402	-		GFF4962	0.56	-0.1
4,959,407	-		GFF4962	0.57	+0.0
4,959,407	-		GFF4962	0.57	-1.6
4,959,407	-		GFF4962	0.57	+0.8
4,959,409	+		GFF4962	0.57	+0.4
4,959,424	+		GFF4962	0.58	+0.5
4,959,424	+		GFF4962	0.58	-1.1
4,959,424	+		GFF4962	0.58	-0.6
4,959,424	+		GFF4962	0.58	-1.1
4,959,424	+		GFF4962	0.58	-2.4
4,959,424	+		GFF4962	0.58	+0.2
4,959,424	+		GFF4962	0.58	-1.5
4,959,424	+		GFF4962	0.58	-0.5
4,959,431	+		GFF4962	0.59	-2.3
4,959,432	-		GFF4962	0.59	-0.2
4,959,432	-		GFF4962	0.59	-0.2
4,959,432	-		GFF4962	0.59	-0.6
4,959,432	-		GFF4962	0.59	-0.5
4,959,437	-		GFF4962	0.59	-2.3
4,959,439	-		GFF4962	0.59	-0.9
4,959,442	+		GFF4962	0.60	+1.1
4,959,460	-		GFF4962	0.61	-0.2
4,959,474	-		GFF4962	0.62	-0.6
4,959,478	-		GFF4962	0.63	-0.5
4,959,487	+		GFF4962	0.64	-1.3
4,959,501	+		GFF4962	0.65	-0.6
4,959,510	+		GFF4962	0.66	-0.2
4,959,510	+		GFF4962	0.66	-0.6
4,959,510	+		GFF4962	0.66	-0.6
4,959,510	+		GFF4962	0.66	+0.3
4,959,510	+		GFF4962	0.66	-0.1
4,959,518	-		GFF4962	0.66	-1.1
4,959,518	-		GFF4962	0.66	-1.1
4,959,520	+		GFF4962	0.66	+0.0
4,959,528	-		GFF4962	0.67	+0.1
4,959,538	+		GFF4962	0.68	+1.0
4,959,539	+		GFF4962	0.68	-1.2
4,959,573	-		GFF4962	0.71	-1.9
4,959,595	+		GFF4962	0.73	-0.1
4,959,599	+		GFF4962	0.73	-2.6
4,959,607	-		GFF4962	0.74	+0.5
4,959,607	-		GFF4962	0.74	-1.1
4,959,607	-		GFF4962	0.74	-2.4
4,959,607	-		GFF4962	0.74	-0.3
4,959,607	-		GFF4962	0.74	-0.6
4,959,609	+		GFF4962	0.74	-1.4
4,959,647	-		GFF4962	0.78	-2.0
4,959,658	-		GFF4962	0.79	-1.6
4,959,669	-		GFF4962	0.79	-0.1
4,959,676	-		GFF4962	0.80	+0.4
4,959,688	+		GFF4962	0.81	-1.6
4,959,688	+		GFF4962	0.81	+0.1
4,959,718	+		GFF4962	0.84	+0.9
4,959,718	+		GFF4962	0.84	-1.3
4,959,718	-		GFF4962	0.84	+0.0
4,959,718	-		GFF4962	0.84	-0.9