Strain Fitness in Sphingobium sp. HT1-2 around GFF4879

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,865,871	-		GFF4878	0.40	+0.3
4,865,912	+		GFF4878	0.43	-0.8
4,865,912	+		GFF4878	0.43	-0.5
4,865,920	-		GFF4878	0.44	-0.1
4,865,929	+		GFF4878	0.44	-0.6
4,865,930	+		GFF4878	0.44	-0.1
4,865,931	+		GFF4878	0.44	+0.1
4,865,931	+		GFF4878	0.44	-1.1
4,865,931	+		GFF4878	0.44	-0.6
4,865,937	+		GFF4878	0.45	+0.1
4,865,937	-		GFF4878	0.45	-0.7
4,865,937	-		GFF4878	0.45	+1.2
4,865,937	-		GFF4878	0.45	+0.5
4,865,939	-		GFF4878	0.45	-0.2
4,865,939	-		GFF4878	0.45	+1.8
4,865,971	+		GFF4878	0.47	+0.4
4,865,971	+		GFF4878	0.47	-0.1
4,865,974	-		GFF4878	0.47	-0.4
4,865,979	-		GFF4878	0.47	-0.3
4,865,981	+		GFF4878	0.47	+0.3
4,865,989	-		GFF4878	0.48	+1.2
4,865,989	-		GFF4878	0.48	-1.3
4,866,037	-		GFF4878	0.51	-0.1
4,866,066	-		GFF4878	0.53	-0.6
4,866,102	+		GFF4878	0.55	-1.2
4,866,108	-		GFF4878	0.55	-0.6
4,866,110	-		GFF4878	0.55	+0.8
4,866,112	-		GFF4878	0.55	-1.0
4,866,129	-		GFF4878	0.56	+0.0
4,866,131	+		GFF4878	0.57	+0.1
4,866,138	+		GFF4878	0.57	-0.5
4,866,139	-		GFF4878	0.57	+0.9
4,866,139	-		GFF4878	0.57	+0.9
4,866,139	-		GFF4878	0.57	+1.2
4,866,144	-		GFF4878	0.57	+0.2
4,866,168	+		GFF4878	0.59	+0.4
4,866,173	+		GFF4878	0.59	-1.1
4,866,173	+		GFF4878	0.59	+1.8
4,866,173	+		GFF4878	0.59	+0.3
4,866,218	+		GFF4878	0.62	+2.1
4,866,238	-		GFF4878	0.63	+0.2
4,866,238	-		GFF4878	0.63	-0.9
4,866,241	-		GFF4878	0.63	+0.3
4,866,243	+		GFF4878	0.64	-0.2
4,866,247	+		GFF4878	0.64	-2.3
4,866,250	+		GFF4878	0.64	-0.3
4,866,288	-		GFF4878	0.66	-0.8
4,866,299	+		GFF4878	0.67	+1.9
4,866,299	+		GFF4878	0.67	-0.2
4,866,299	+		GFF4878	0.67	-0.2
4,866,304	+		GFF4878	0.67	-0.1
4,866,304	+		GFF4878	0.67	+1.6
4,866,304	+		GFF4878	0.67	-0.5
4,866,307	-		GFF4878	0.68	+0.3
4,866,307	-		GFF4878	0.68	-1.4
4,866,312	-		GFF4878	0.68	+0.4
4,866,312	-		GFF4878	0.68	+1.3
4,866,312	-		GFF4878	0.68	+0.2
4,866,312	-		GFF4878	0.68	-1.0
4,866,312	-		GFF4878	0.68	-0.2
4,866,312	-		GFF4878	0.68	-1.1
4,866,312	-		GFF4878	0.68	+0.3
4,866,312	-		GFF4878	0.68	+0.4
4,866,312	-		GFF4878	0.68	-1.2
4,866,330	+		GFF4878	0.69	+0.7
4,866,361	-		GFF4878	0.71	-1.7
4,866,376	-		GFF4878	0.72	-0.7
4,866,402	+		GFF4878	0.73	-0.3
4,866,405	-		GFF4878	0.74	+0.3
4,866,405	-		GFF4878	0.74	-0.8
4,866,408	-		GFF4878	0.74	+0.5
4,866,410	-		GFF4878	0.74	+0.7
4,866,410	-		GFF4878	0.74	+1.4
4,866,426	+		GFF4878	0.75	-0.8
4,866,459	+		GFF4878	0.77	+0.3
4,866,459	+		GFF4878	0.77	-1.2
4,866,459	+		GFF4878	0.77	-0.3
4,866,474	+		GFF4878	0.78	+1.2
4,866,474	+		GFF4878	0.78	+0.4
4,866,508	+		GFF4878	0.80	-0.6
4,866,508	-		GFF4878	0.80	-0.2
4,866,514	+		GFF4878	0.80	-1.0
4,866,558	+		GFF4878	0.83	-1.6
4,866,616	+		GFF4878	0.87	-0.4
4,866,652	-		GFF4878	0.89	+0.8
4,866,681	+				+0.8
4,866,711	+				-0.5
4,866,715	-				-0.1
4,866,724	+				+1.2
4,866,724	+				+1.5
4,866,758	+				-0.2
4,866,771	+				+0.3
4,866,807	+				-1.3
4,866,812	+				+0.5
4,866,821	-				-0.8
4,866,836	+				-2.7
4,866,844	-				+1.1
4,866,846	+				-0.3
4,866,854	-				-0.4
4,866,867	+				+1.3
4,866,872	+				-0.0
4,866,872	+				-0.7
4,866,872	+				+1.3
4,866,873	-				+1.6
4,866,875	-				-0.6
4,866,875	-				+0.3
4,866,875	-				-0.4
4,866,880	-				-0.6
4,866,882	+				+0.6
4,866,882	+				+0.2
4,866,890	-				-0.2
4,866,890	-				+0.1
4,866,890	-				+2.2
4,866,900	+				+0.6
4,866,900	+				+0.3
4,866,900	+				-0.5
4,866,900	+				+0.4
4,866,908	-				-0.6
4,866,908	-				+0.8
4,866,908	-				-0.1
4,866,915	-				+0.2
4,866,919	-				-0.6
4,866,924	-				+0.6
4,866,964	-				+0.3
4,867,009	-		GFF4879	0.11	-0.5
4,867,028	+		GFF4879	0.12	+1.1
4,867,037	-		GFF4879	0.13	+2.1
4,867,055	+		GFF4879	0.14	-0.8
4,867,106	+		GFF4879	0.17	-0.3
4,867,106	+		GFF4879	0.17	+0.6
4,867,106	+		GFF4879	0.17	-1.7
4,867,106	+		GFF4879	0.17	-0.6
4,867,106	+		GFF4879	0.17	-0.3
4,867,106	+		GFF4879	0.17	-0.9
4,867,109	-		GFF4879	0.17	+0.3
4,867,114	-		GFF4879	0.17	+2.1
4,867,114	-		GFF4879	0.17	-0.1
4,867,114	-		GFF4879	0.17	+0.2
4,867,114	-		GFF4879	0.17	-1.7
4,867,114	-		GFF4879	0.17	+0.9
4,867,124	-		GFF4879	0.18	-0.5
4,867,138	+		GFF4879	0.19	-0.1
4,867,157	-		GFF4879	0.20	+0.1
4,867,170	+		GFF4879	0.21	-1.5
4,867,175	+		GFF4879	0.21	-1.2
4,867,208	+		GFF4879	0.23	+1.1
4,867,208	-		GFF4879	0.23	-1.2
4,867,216	-		GFF4879	0.24	-0.9
4,867,216	-		GFF4879	0.24	+1.3
4,867,217	+		GFF4879	0.24	-0.9
4,867,217	+		GFF4879	0.24	-0.6
4,867,228	+		GFF4879	0.24	-0.6
4,867,234	-		GFF4879	0.25	-0.6
4,867,245	-		GFF4879	0.26	+0.1
4,867,255	-		GFF4879	0.26	-0.6
4,867,255	-		GFF4879	0.26	+0.3
4,867,311	-		GFF4879	0.30	+0.3
4,867,312	-		GFF4879	0.30	+0.1
4,867,313	+		GFF4879	0.30	+0.3
4,867,316	-		GFF4879	0.30	-0.6
4,867,316	-		GFF4879	0.30	-1.4
4,867,335	-		GFF4879	0.31	+0.7
4,867,371	-		GFF4879	0.33	+1.0
4,867,387	-		GFF4879	0.34	-1.0
4,867,389	+		GFF4879	0.34	-0.5
4,867,389	+		GFF4879	0.34	-0.3
4,867,417	-		GFF4879	0.36	+1.9
4,867,422	-		GFF4879	0.36	+1.0
4,867,424	+		GFF4879	0.37	+0.3
4,867,424	+		GFF4879	0.37	-0.6
4,867,424	+		GFF4879	0.37	-0.3
4,867,427	-		GFF4879	0.37	-0.3
4,867,429	+		GFF4879	0.37	-1.4
4,867,430	+		GFF4879	0.37	-1.1
4,867,432	-		GFF4879	0.37	-0.8
4,867,432	-		GFF4879	0.37	-1.0
4,867,432	-		GFF4879	0.37	+1.0
4,867,436	+		GFF4879	0.37	-0.2
4,867,445	-		GFF4879	0.38	-0.4
4,867,446	+		GFF4879	0.38	+0.0
4,867,446	+		GFF4879	0.38	-1.6
4,867,451	+		GFF4879	0.38	-0.5
4,867,454	-		GFF4879	0.38	+0.3
4,867,454	-		GFF4879	0.38	+0.8
4,867,454	-		GFF4879	0.38	+0.0
4,867,529	+		GFF4879	0.43	-1.1
4,867,576	+		GFF4879	0.46	-1.9
4,867,576	+		GFF4879	0.46	-0.2
4,867,584	-		GFF4879	0.47	-1.1
4,867,584	-		GFF4879	0.47	+0.1
4,867,592	-		GFF4879	0.47	+0.0
4,867,592	-		GFF4879	0.47	+0.2
4,867,630	+		GFF4879	0.49	+0.3
4,867,653	+		GFF4879	0.51	+1.2
4,867,659	+		GFF4879	0.51	-0.3
4,867,659	+		GFF4879	0.51	-0.6
4,867,680	-		GFF4879	0.52	+0.2
4,867,685	-		GFF4879	0.53	+0.4
4,867,691	-		GFF4879	0.53	-0.1
4,867,697	+		GFF4879	0.53	-0.5
4,867,697	+		GFF4879	0.53	-0.5
4,867,697	+		GFF4879	0.53	+0.9
4,867,697	+		GFF4879	0.53	-0.3
4,867,697	+		GFF4879	0.53	+0.2
4,867,705	-		GFF4879	0.54	+0.4
4,867,781	-		GFF4879	0.59	-0.4
4,867,781	-		GFF4879	0.59	+0.9
4,867,790	+		GFF4879	0.59	+0.1
4,867,798	+		GFF4879	0.60	-0.4
4,867,798	+		GFF4879	0.60	+1.3
4,867,798	-		GFF4879	0.60	-0.4
4,867,823	-		GFF4879	0.61	-0.2
4,867,831	+		GFF4879	0.62	-0.8
4,867,836	+		GFF4879	0.62	-0.9
4,867,836	+		GFF4879	0.62	-0.8
4,867,844	-		GFF4879	0.63	-0.5
4,867,844	-		GFF4879	0.63	-1.7
4,867,846	+		GFF4879	0.63	-0.9
4,867,860	+		GFF4879	0.64	+1.9
4,867,862	+		GFF4879	0.64	+0.3
4,867,868	-		GFF4879	0.64	+2.1
4,867,933	-		GFF4879	0.68	-1.4
4,867,936	-		GFF4879	0.68	+0.7
4,867,949	+		GFF4879	0.69	+0.0
4,867,963	+		GFF4879	0.70	-1.5
4,868,065	+		GFF4879	0.76	+0.4
4,868,065	+		GFF4879	0.76	+0.2
4,868,073	-		GFF4879	0.77	-1.7
4,868,093	-		GFF4879	0.78	-0.5
4,868,096	+		GFF4879	0.78	-0.9
4,868,096	+		GFF4879	0.78	-0.8
4,868,096	+		GFF4879	0.78	-1.0
4,868,104	-		GFF4879	0.79	-1.9
4,868,104	-		GFF4879	0.79	+0.5
4,868,106	+		GFF4879	0.79	-0.6
4,868,106	+		GFF4879	0.79	+0.8
4,868,114	-		GFF4879	0.79	+0.6
4,868,119	-		GFF4879	0.80	+0.6
4,868,124	-		GFF4879	0.80	+0.1
4,868,150	-		GFF4879	0.82	-1.7
4,868,179	+		GFF4879	0.83	-1.9
4,868,184	+		GFF4879	0.84	+0.7
4,868,249	-		GFF4879	0.88	+0.4
4,868,255	-		GFF4879	0.88	-0.3
4,868,265	+		GFF4879	0.89	-0.3
4,868,267	+		GFF4879	0.89	+0.1
4,868,282	-		GFF4879	0.90	-0.3
4,868,308	+				+0.3
4,868,308	+				+1.4
4,868,316	-				+0.9
4,868,334	+				-0.5
4,868,334	+				-0.7
4,868,342	-				-0.1
4,868,363	+				+1.1
4,868,363	+				+1.1
4,868,372	-				-0.7
4,868,429	+				-0.8
4,868,429	+				-0.9
4,868,429	+				-0.5
4,868,430	+				+0.1
4,868,430	+				+0.5
4,868,430	+				+0.6
4,868,454	-				+1.3
4,868,456	+				+0.6
4,868,456	+				-1.3
4,868,456	+				-1.5
4,868,456	+				-0.3
4,868,459	-				+0.6
4,868,464	-				-1.0
4,868,464	-				+0.6
4,868,464	-				+0.4
4,868,465	-				-0.0
4,868,466	+				+0.3
4,868,474	-				+0.8
4,868,474	-				-0.9
4,868,490	+				+0.3
4,868,510	-				-2.8
4,868,511	+				+0.1
4,868,519	-				+0.0
4,868,519	-				-0.9
4,868,519	-				-1.2
4,868,519	-				+0.1
4,868,521	+				-0.4
4,868,529	-				-1.2
4,868,535	+				-1.6
4,868,537	+				-0.2
4,868,547	+				-0.4
4,868,547	+				+0.1
4,868,547	+				+0.1
4,868,555	-				+1.1
4,868,588	+				+0.6
4,868,596	-				-1.9
4,868,611	-				+1.2
4,868,616	+				+2.2
4,868,624	-				-2.5
4,868,751	+				-0.1
4,868,759	+				-0.9
4,868,761	+				-0.8
4,868,767	-				+0.5
4,868,802	+				+0.6
4,868,802	+				+0.2
4,868,803	+				-0.7
4,868,803	+				+0.2
4,868,803	+				-0.8
4,868,803	+				+0.8
4,868,803	+				+0.5
4,868,803	+				-1.6
4,868,810	-				-0.7
4,868,810	-				+0.1
4,868,810	-				+0.8
4,868,810	-				-0.8
4,868,811	-				-0.3
4,868,811	-				+0.5
4,868,811	-				-1.1
4,868,811	-				-1.4
4,868,832	-				-1.0
4,868,844	+				+0.8
4,868,844	+				+0.6
4,868,844	+				+0.4
4,868,848	+		GFF4880	0.10	+0.6
4,868,848	+		GFF4880	0.10	+0.7
4,868,852	-		GFF4880	0.11	+1.2
4,868,853	-		GFF4880	0.11	+0.1
4,868,863	+		GFF4880	0.12	-1.9
4,868,863	+		GFF4880	0.12	+0.1
4,868,863	+		GFF4880	0.12	+0.3
4,868,863	+		GFF4880	0.12	-0.0
4,868,871	-		GFF4880	0.13	+0.8
4,868,871	-		GFF4880	0.13	+0.6
4,868,871	-		GFF4880	0.13	-1.3
4,868,871	-		GFF4880	0.13	-1.4
4,868,899	+		GFF4880	0.16	+1.0
4,868,906	+		GFF4880	0.17	-0.6
4,868,928	+		GFF4880	0.19	+0.1
4,868,961	-		GFF4880	0.23	+0.9
4,868,961	-		GFF4880	0.23	+0.8
4,868,961	-		GFF4880	0.23	+0.0
4,868,991	+		GFF4880	0.26	+1.5
4,868,991	+		GFF4880	0.26	+1.2
4,868,998	+		GFF4880	0.27	-0.2
4,869,035	+		GFF4880	0.31	-0.3
4,869,039	-		GFF4880	0.32	-1.5
4,869,041	+		GFF4880	0.32	-1.2
4,869,041	+		GFF4880	0.32	-1.2
4,869,042	+		GFF4880	0.32	+0.5
4,869,043	-		GFF4880	0.32	+0.4
4,869,051	+		GFF4880	0.33	+2.3
4,869,053	-		GFF4880	0.33	+0.4
4,869,058	-		GFF4880	0.34	+0.2
4,869,059	-		GFF4880	0.34	+0.8
4,869,066	-		GFF4880	0.35	-1.6
4,869,082	+		GFF4880	0.36	+0.3
4,869,100	-		GFF4880	0.38	+1.8
4,869,108	+		GFF4880	0.39	-0.1
4,869,126	+		GFF4880	0.41	-0.7
4,869,128	+		GFF4880	0.42	+0.3
4,869,128	+		GFF4880	0.42	-0.8
4,869,128	+		GFF4880	0.42	+2.1
4,869,136	-		GFF4880	0.43	-0.9
4,869,138	-		GFF4880	0.43	+0.0
4,869,159	+		GFF4880	0.45	-0.2
4,869,159	+		GFF4880	0.45	+0.3
4,869,206	+		GFF4880	0.50	-1.5
4,869,209	+		GFF4880	0.51	-1.0
4,869,209	+		GFF4880	0.51	+0.1
4,869,211	+		GFF4880	0.51	-1.2
4,869,217	-		GFF4880	0.52	+0.5
4,869,217	-		GFF4880	0.52	-2.8
4,869,217	-		GFF4880	0.52	+1.7
4,869,219	-		GFF4880	0.52	+0.7
4,869,219	-		GFF4880	0.52	-1.2
4,869,219	-		GFF4880	0.52	+0.2
4,869,219	-		GFF4880	0.52	+0.5
4,869,232	-		GFF4880	0.53	-0.8
4,869,237	+		GFF4880	0.54	+0.3
4,869,245	-		GFF4880	0.55	+0.5
4,869,269	-		GFF4880	0.57	-0.8
4,869,269	-		GFF4880	0.57	+0.7
4,869,281	+		GFF4880	0.59	-1.5
4,869,298	+		GFF4880	0.61	-0.9
4,869,338	-		GFF4880	0.65	-0.4
4,869,351	+		GFF4880	0.67	+0.5
4,869,358	+		GFF4880	0.67	-1.2
4,869,387	+		GFF4880	0.71	+0.1
4,869,387	+		GFF4880	0.71	-0.3
4,869,387	+		GFF4880	0.71	+0.8
4,869,387	+		GFF4880	0.71	-1.2
4,869,387	+		GFF4880	0.71	+1.3
4,869,387	+		GFF4880	0.71	-0.1
4,869,395	-		GFF4880	0.72	+0.3
4,869,395	-		GFF4880	0.72	-1.9