Strain Fitness in Sphingobium sp. HT1-2 around GFF4674

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,669,654	+		GFF4673	0.41	+0.2
4,669,673	+		GFF4673	0.42	-1.2
4,669,681	-		GFF4673	0.43	+0.6
4,669,699	-		GFF4673	0.44	-1.5
4,669,734	-		GFF4673	0.46	+0.3
4,669,734	-		GFF4673	0.46	+0.6
4,669,810	-		GFF4673	0.50	+1.0
4,669,810	-		GFF4673	0.50	+1.8
4,669,881	+		GFF4673	0.55	+0.4
4,669,924	-		GFF4673	0.57	+2.4
4,669,926	+		GFF4673	0.57	+0.5
4,669,934	-		GFF4673	0.58	+0.6
4,669,940	+		GFF4673	0.58	+0.3
4,670,007	-		GFF4673	0.62	+0.3
4,670,059	-		GFF4673	0.65	+1.0
4,670,084	-		GFF4673	0.66	+0.9
4,670,140	+		GFF4673	0.70	-0.6
4,670,145	+		GFF4673	0.70	-1.2
4,670,153	+		GFF4673	0.71	-0.1
4,670,158	+		GFF4673	0.71	-0.5
4,670,160	+		GFF4673	0.71	+0.3
4,670,160	+		GFF4673	0.71	+0.4
4,670,161	-		GFF4673	0.71	+0.6
4,670,161	-		GFF4673	0.71	+0.5
4,670,163	+		GFF4673	0.71	+0.1
4,670,171	-		GFF4673	0.72	+0.8
4,670,172	-		GFF4673	0.72	+0.8
4,670,174	+		GFF4673	0.72	-1.4
4,670,182	-		GFF4673	0.72	+0.4
4,670,182	-		GFF4673	0.72	-0.1
4,670,182	-		GFF4673	0.72	+1.9
4,670,216	+		GFF4673	0.74	-1.1
4,670,218	+		GFF4673	0.74	+0.6
4,670,224	-		GFF4673	0.75	-0.2
4,670,224	-		GFF4673	0.75	-0.3
4,670,231	-		GFF4673	0.75	-0.5
4,670,352	+		GFF4673	0.82	+0.9
4,670,375	+		GFF4673	0.84	+2.0
4,670,378	-		GFF4673	0.84	+0.3
4,670,383	-		GFF4673	0.84	+0.6
4,670,406	-		GFF4673	0.85	-0.5
4,670,434	-		GFF4673	0.87	+1.1
4,670,436	+		GFF4673	0.87	+1.2
4,670,441	+		GFF4673	0.88	-1.6
4,670,480	+		GFF4673	0.90	-0.2
4,670,480	+		GFF4673	0.90	+1.6
4,670,480	+		GFF4673	0.90	-0.1
4,670,485	+				+1.9
4,670,485	+				+0.9
4,670,485	+				+1.0
4,670,485	+				-0.1
4,670,485	+				+0.3
4,670,488	-				+0.4
4,670,493	-				-0.2
4,670,493	-				+0.9
4,670,493	-				+0.5
4,670,493	-				+1.1
4,670,493	-				+1.6
4,670,508	+				-2.0
4,670,508	-				-0.1
4,670,558	-				+1.4
4,670,594	-				+0.9
4,670,594	-				-0.0
4,670,596	+				+1.1
4,670,643	-				+0.2
4,670,704	-				+0.3
4,670,726	-				+2.0
4,670,735	+				-0.2
4,670,741	-				+2.0
4,670,743	-				+0.6
4,670,743	-				+1.6
4,670,816	+		GFF4674	0.14	+1.5
4,670,817	-		GFF4674	0.15	+0.4
4,670,865	+		GFF4674	0.19	-1.4
4,670,875	+		GFF4674	0.20	-0.9
4,670,924	+		GFF4674	0.24	-0.7
4,670,936	-		GFF4674	0.25	+1.0
4,670,947	+		GFF4674	0.26	-2.2
4,670,947	+		GFF4674	0.26	+2.0
4,670,947	+		GFF4674	0.26	+0.1
4,670,947	+		GFF4674	0.26	+0.8
4,670,947	+		GFF4674	0.26	+1.6
4,670,947	+		GFF4674	0.26	+1.2
4,670,955	-		GFF4674	0.27	+0.9
4,670,955	-		GFF4674	0.27	+2.2
4,670,957	+		GFF4674	0.27	-0.4
4,670,957	+		GFF4674	0.27	+0.9
4,670,965	-		GFF4674	0.27	+0.5
4,670,970	-		GFF4674	0.28	-0.4
4,670,970	-		GFF4674	0.28	+1.9
4,670,970	-		GFF4674	0.28	+2.4
4,670,991	-		GFF4674	0.30	+2.3
4,671,010	-		GFF4674	0.31	-1.6
4,671,035	+		GFF4674	0.34	+0.2
4,671,050	+		GFF4674	0.35	-1.9
4,671,058	-		GFF4674	0.36	+0.2
4,671,058	-		GFF4674	0.36	-0.9
4,671,058	-		GFF4674	0.36	+0.6
4,671,058	-		GFF4674	0.36	-0.4
4,671,092	-		GFF4674	0.38	+0.9
4,671,122	-		GFF4674	0.41	+1.4
4,671,127	-		GFF4674	0.41	+0.2
4,671,127	-		GFF4674	0.41	-1.1
4,671,127	-		GFF4674	0.41	+0.8
4,671,150	+		GFF4674	0.43	-0.1
4,671,153	-		GFF4674	0.44	+0.2
4,671,168	+		GFF4674	0.45	+0.8
4,671,168	+		GFF4674	0.45	+0.4
4,671,173	+		GFF4674	0.45	+2.0
4,671,176	-		GFF4674	0.46	+2.2
4,671,183	-		GFF4674	0.46	+0.1
4,671,200	+		GFF4674	0.48	+1.5
4,671,209	+		GFF4674	0.49	-0.9
4,671,210	+		GFF4674	0.49	+0.2
4,671,265	+		GFF4674	0.53	+1.4
4,671,321	-		GFF4674	0.58	+1.5
4,671,394	+		GFF4674	0.65	+1.0
4,671,394	+		GFF4674	0.65	-0.6
4,671,394	+		GFF4674	0.65	+0.9
4,671,394	+		GFF4674	0.65	+0.2
4,671,422	+		GFF4674	0.67	-0.4
4,671,436	+		GFF4674	0.68	-0.3
4,671,436	+		GFF4674	0.68	+0.4
4,671,444	+		GFF4674	0.69	+0.7
4,671,444	-		GFF4674	0.69	-0.0
4,671,449	-		GFF4674	0.69	+0.7
4,671,450	-		GFF4674	0.70	+1.4
4,671,483	+		GFF4674	0.72	+1.5
4,671,529	+		GFF4674	0.76	+2.5
4,671,570	+		GFF4674	0.80	-1.2
4,671,578	-		GFF4674	0.81	-0.6
4,671,582	-		GFF4674	0.81	+0.5
4,671,610	+		GFF4674	0.83	-0.1
4,671,610	+		GFF4674	0.83	+0.2
4,671,610	+		GFF4674	0.83	+0.6
4,671,610	+		GFF4674	0.83	-1.6
4,671,617	+		GFF4674	0.84	-0.4
4,671,618	-		GFF4674	0.84	-0.9
4,671,633	+		GFF4674	0.85	+1.6
4,671,661	-		GFF4674	0.88	+2.5
4,671,669	+		GFF4674	0.89	-0.5
4,671,677	-		GFF4674	0.89	-0.9
4,671,677	-		GFF4674	0.89	+1.7
4,671,710	+				+0.6
4,671,718	-				+1.0
4,671,718	-				-0.5
4,671,718	-				+1.1
4,671,800	-				+1.5
4,671,815	-				+1.1
4,671,821	-				+1.1
4,671,821	-				+0.8
4,671,821	-				-1.5
4,671,821	-				+1.1
4,671,821	-				-0.2
4,671,821	-				+0.0
4,671,848	-				+1.7
4,671,851	-				-0.3
4,671,880	+				+2.0
4,671,937	-		GFF4675	0.13	+0.3
4,671,976	+		GFF4675	0.17	+0.9
4,672,070	+		GFF4675	0.26	+1.4
4,672,096	-		GFF4675	0.28	+1.4
4,672,117	+		GFF4675	0.30	+0.2
4,672,124	+		GFF4675	0.31	+0.4
4,672,125	-		GFF4675	0.31	+1.4
4,672,125	-		GFF4675	0.31	-0.1
4,672,182	-		GFF4675	0.36	+0.4
4,672,192	+		GFF4675	0.37	+1.0
4,672,192	+		GFF4675	0.37	-0.2
4,672,193	+		GFF4675	0.37	+0.2
4,672,200	-		GFF4675	0.38	+0.1
4,672,206	-		GFF4675	0.39	+0.1
4,672,243	+		GFF4675	0.42	+0.3
4,672,271	-		GFF4675	0.45	+0.0
4,672,277	+		GFF4675	0.45	-0.4
4,672,277	+		GFF4675	0.45	-0.4
4,672,285	-		GFF4675	0.46	+0.7
4,672,306	-		GFF4675	0.48	+2.5
4,672,317	+		GFF4675	0.49	+0.4
4,672,376	+		GFF4675	0.55	+0.9
4,672,387	+		GFF4675	0.56	+0.2
4,672,410	+		GFF4675	0.58	-1.2
4,672,410	+		GFF4675	0.58	-1.2
4,672,481	-		GFF4675	0.65	-0.7
4,672,522	+		GFF4675	0.68	+0.2
4,672,522	+		GFF4675	0.68	+0.6
4,672,522	+		GFF4675	0.68	+1.2
4,672,522	+		GFF4675	0.68	+1.9
4,672,530	-		GFF4675	0.69	+1.1
4,672,530	-		GFF4675	0.69	+0.2
4,672,530	-		GFF4675	0.69	+0.5
4,672,530	-		GFF4675	0.69	+1.6
4,672,530	-		GFF4675	0.69	+0.3
4,672,530	-		GFF4675	0.69	+0.2
4,672,566	+		GFF4675	0.73	+0.4
4,672,566	+		GFF4675	0.73	+1.2
4,672,566	+		GFF4675	0.73	+1.1
4,672,566	+		GFF4675	0.73	+1.0
4,672,566	+		GFF4675	0.73	-0.8
4,672,574	-		GFF4675	0.73	+1.0
4,672,574	-		GFF4675	0.73	-0.8
4,672,574	-		GFF4675	0.73	+0.9
4,672,574	-		GFF4675	0.73	-0.9
4,672,595	-		GFF4675	0.75	+0.3
4,672,612	+		GFF4675	0.77	+0.6
4,672,676	-		GFF4675	0.83	+1.6
4,672,686	-		GFF4675	0.84	-0.3
4,672,686	-		GFF4675	0.84	+1.4
4,672,691	-		GFF4675	0.84	+0.4
4,672,691	-		GFF4675	0.84	-0.3
4,672,738	+		GFF4675	0.89	+0.0
4,672,738	+		GFF4675	0.89	-0.6
4,672,751	+				+1.1
4,672,756	+				+1.3
4,672,787	+				-1.9
4,672,787	+				+0.0
4,672,795	-				+1.7