Strain Fitness in Sphingobium sp. HT1-2 around GFF4605

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,598,086	+		GFF4604	0.41	-0.2
4,598,091	+		GFF4604	0.41	-0.3
4,598,094	-		GFF4604	0.41	+0.2
4,598,099	-		GFF4604	0.42	+0.1
4,598,186	-		GFF4604	0.48	+0.7
4,598,189	+		GFF4604	0.48	-1.7
4,598,189	+		GFF4604	0.48	-2.0
4,598,189	+		GFF4604	0.48	-2.0
4,598,189	+		GFF4604	0.48	-1.2
4,598,197	-		GFF4604	0.49	-2.0
4,598,197	-		GFF4604	0.49	+1.3
4,598,197	-		GFF4604	0.49	-1.0
4,598,249	+		GFF4604	0.52	-0.9
4,598,260	+		GFF4604	0.53	-0.1
4,598,267	+		GFF4604	0.54	-0.3
4,598,270	-		GFF4604	0.54	-1.8
4,598,290	-		GFF4604	0.55	-0.9
4,598,298	-		GFF4604	0.56	+1.0
4,598,305	-		GFF4604	0.56	+0.2
4,598,305	-		GFF4604	0.56	-2.0
4,598,322	+		GFF4604	0.57	-0.6
4,598,322	+		GFF4604	0.57	-1.7
4,598,322	+		GFF4604	0.57	-0.4
4,598,322	+		GFF4604	0.57	-2.1
4,598,322	+		GFF4604	0.57	-1.0
4,598,322	+		GFF4604	0.57	-1.8
4,598,322	+		GFF4604	0.57	-0.3
4,598,330	-		GFF4604	0.58	+0.2
4,598,330	-		GFF4604	0.58	-0.7
4,598,330	-		GFF4604	0.58	+0.4
4,598,330	-		GFF4604	0.58	-0.3
4,598,330	-		GFF4604	0.58	+0.1
4,598,330	-		GFF4604	0.58	-1.8
4,598,330	-		GFF4604	0.58	-0.5
4,598,330	-		GFF4604	0.58	-1.3
4,598,330	-		GFF4604	0.58	+0.4
4,598,330	-		GFF4604	0.58	-0.4
4,598,330	-		GFF4604	0.58	+0.3
4,598,330	-		GFF4604	0.58	-1.1
4,598,330	-		GFF4604	0.58	-0.7
4,598,330	-		GFF4604	0.58	-0.5
4,598,330	-		GFF4604	0.58	-0.1
4,598,330	-		GFF4604	0.58	-0.2
4,598,330	-		GFF4604	0.58	+1.1
4,598,330	-		GFF4604	0.58	-0.4
4,598,335	-		GFF4604	0.58	-2.1
4,598,340	-		GFF4604	0.59	-0.8
4,598,340	-		GFF4604	0.59	-0.2
4,598,340	-		GFF4604	0.59	-0.1
4,598,342	-		GFF4604	0.59	+0.9
4,598,397	-		GFF4604	0.63	+0.6
4,598,428	+		GFF4604	0.65	-0.1
4,598,474	-		GFF4604	0.68	+0.4
4,598,474	-		GFF4604	0.68	-0.0
4,598,474	-		GFF4604	0.68	-1.4
4,598,474	-		GFF4604	0.68	+0.1
4,598,474	-		GFF4604	0.68	-0.4
4,598,508	+		GFF4604	0.71	-1.1
4,598,512	-		GFF4604	0.71	-0.2
4,598,534	+		GFF4604	0.72	+0.4
4,598,544	+		GFF4604	0.73	+0.6
4,598,623	+		GFF4604	0.79	-0.4
4,598,675	+		GFF4604	0.82	+0.3
4,598,680	+		GFF4604	0.83	-0.3
4,598,680	+		GFF4604	0.83	-1.9
4,598,688	-		GFF4604	0.83	-0.7
4,598,690	+		GFF4604	0.83	-0.2
4,598,732	+		GFF4604	0.86	-1.6
4,598,772	-		GFF4604	0.89	+0.3
4,598,806	+				-1.1
4,598,821	+				+0.5
4,598,847	+				+0.4
4,598,855	+				-0.1
4,598,865	+				+0.1
4,598,931	+				+0.9
4,598,939	-				-1.6
4,598,939	-				-0.4
4,598,939	-				-0.5
4,598,949	-				-0.1
4,598,964	+				+0.5
4,598,972	-				-1.7
4,598,976	+				-1.6
4,599,015	-				-2.5
4,599,096	+				+0.3
4,599,151	+				+1.0
4,599,177	+				+0.1
4,599,178	+				-0.6
4,599,178	+				+1.0
4,599,178	+				-0.5
4,599,186	-				-0.1
4,599,207	-				-3.9
4,599,217	-				-1.3
4,599,217	-				+0.2
4,599,217	-				+0.6
4,599,217	-				-0.3
4,599,222	-				-0.4
4,599,222	-				+0.1
4,599,248	-		GFF4605	0.10	-0.1
4,599,295	-		GFF4605	0.13	+0.6
4,599,311	+		GFF4605	0.14	+2.1
4,599,311	+		GFF4605	0.14	+0.3
4,599,311	+		GFF4605	0.14	+0.7
4,599,338	+		GFF4605	0.15	-0.9
4,599,338	+		GFF4605	0.15	-2.7
4,599,338	+		GFF4605	0.15	+0.1
4,599,338	+		GFF4605	0.15	+0.8
4,599,375	+		GFF4605	0.17	+1.6
4,599,394	-		GFF4605	0.18	+0.5
4,599,433	-		GFF4605	0.20	-0.2
4,599,437	+		GFF4605	0.21	-0.9
4,599,437	+		GFF4605	0.21	+0.8
4,599,437	+		GFF4605	0.21	+2.0
4,599,450	+		GFF4605	0.21	-0.5
4,599,453	-		GFF4605	0.22	-0.4
4,599,515	-		GFF4605	0.25	-0.1
4,599,573	-		GFF4605	0.28	-0.1
4,599,626	-		GFF4605	0.31	-0.1
4,599,626	-		GFF4605	0.31	-0.9
4,599,642	+		GFF4605	0.32	-0.8
4,599,642	+		GFF4605	0.32	-0.8
4,599,650	-		GFF4605	0.33	-1.6
4,599,650	-		GFF4605	0.33	-1.6
4,599,659	+		GFF4605	0.33	+1.7
4,599,874	-		GFF4605	0.45	-0.2
4,599,898	+		GFF4605	0.46	-1.0
4,599,898	+		GFF4605	0.46	-0.8
4,599,909	+		GFF4605	0.47	+0.1
4,599,961	+		GFF4605	0.50	-0.8
4,599,961	+		GFF4605	0.50	-1.4
4,599,969	-		GFF4605	0.50	-0.3
4,599,971	+		GFF4605	0.51	-1.1
4,599,973	+		GFF4605	0.51	-0.0
4,599,979	-		GFF4605	0.51	+0.4
4,600,037	-		GFF4605	0.54	-0.6
4,600,090	+		GFF4605	0.57	-1.3
4,600,098	-		GFF4605	0.58	-1.3
4,600,152	+		GFF4605	0.61	-0.9
4,600,160	+		GFF4605	0.61	-1.8
4,600,216	+		GFF4605	0.64	+0.4
4,600,216	+		GFF4605	0.64	-0.3
4,600,224	-		GFF4605	0.65	-2.1
4,600,253	+		GFF4605	0.66	-1.5
4,600,294	-		GFF4605	0.69	-1.2
4,600,294	-		GFF4605	0.69	-0.3
4,600,295	-		GFF4605	0.69	+0.7
4,600,319	+		GFF4605	0.70	-1.0
4,600,319	+		GFF4605	0.70	-1.0
4,600,324	+		GFF4605	0.70	-1.2
4,600,334	+		GFF4605	0.71	+0.3
4,600,334	+		GFF4605	0.71	-1.1
4,600,342	-		GFF4605	0.71	-1.7
4,600,371	+		GFF4605	0.73	-0.7
4,600,371	+		GFF4605	0.73	-0.8
4,600,387	+		GFF4605	0.74	-1.0
4,600,400	+		GFF4605	0.75	-0.1
4,600,484	+		GFF4605	0.79	-0.6
4,600,492	-		GFF4605	0.80	+0.5
4,600,508	-		GFF4605	0.81	+0.0
4,600,513	-		GFF4605	0.81	-0.3
4,600,548	+		GFF4605	0.83	-0.4
4,600,564	+		GFF4605	0.84	+0.1
4,600,577	-		GFF4605	0.84	+0.3
4,600,608	+		GFF4605	0.86	-1.7
4,600,610	+		GFF4605	0.86	-1.3
4,600,708	-				+1.0
4,600,740	-				+0.7
4,600,744	+				-1.4
4,600,746	+				-1.7
4,600,759	+				-1.4
4,600,759	+				-0.6
4,600,759	+				-0.3
4,600,767	-				+1.3
4,600,767	-				+1.8
4,600,767	-				-1.0
4,600,792	+				-0.1
4,600,800	-				-1.7
4,600,813	-				-0.4
4,600,831	+				-0.7
4,600,859	-				+0.7
4,600,883	+				-0.8
4,600,888	+				+0.7
4,600,889	+				-0.6
4,600,932	+				-0.1
4,600,932	+				+0.6
4,600,937	+				-0.1
4,600,940	-				-2.0
4,600,940	-				+1.0
4,600,940	-				-0.1
4,600,940	-				-0.3
4,600,940	-				-0.4
4,600,973	+				+0.5
4,600,981	-				-0.4
4,600,981	-				+0.7
4,600,991	-		GFF4606	0.10	-0.0
4,601,000	+		GFF4606	0.11	-0.8
4,601,009	-		GFF4606	0.12	-0.9
4,601,018	+		GFF4606	0.12	-1.3
4,601,027	-		GFF4606	0.13	-0.8
4,601,027	-		GFF4606	0.13	+0.0
4,601,027	-		GFF4606	0.13	-0.4
4,601,058	+		GFF4606	0.15	-0.7
4,601,073	-		GFF4606	0.16	-0.4
4,601,084	+		GFF4606	0.17	+0.6
4,601,130	+		GFF4606	0.20	-0.9
4,601,130	+		GFF4606	0.20	+0.1
4,601,130	+		GFF4606	0.20	-0.7
4,601,138	-		GFF4606	0.21	-0.1
4,601,138	-		GFF4606	0.21	+1.0
4,601,149	+		GFF4606	0.22	-1.3
4,601,155	+		GFF4606	0.22	+0.1
4,601,155	+		GFF4606	0.22	-0.0
4,601,155	+		GFF4606	0.22	+0.3
4,601,155	+		GFF4606	0.22	+0.4
4,601,155	+		GFF4606	0.22	-1.7
4,601,155	+		GFF4606	0.22	-0.3
4,601,155	+		GFF4606	0.22	+0.2
4,601,163	-		GFF4606	0.23	-1.1
4,601,164	-		GFF4606	0.23	-1.1
4,601,168	+		GFF4606	0.23	+1.0
4,601,211	-		GFF4606	0.26	-0.4
4,601,216	-		GFF4606	0.27	+0.8
4,601,265	+		GFF4606	0.30	+0.5
4,601,387	+		GFF4606	0.39	-0.2
4,601,395	-		GFF4606	0.40	-0.6
4,601,411	+		GFF4606	0.41	-0.0
4,601,416	+		GFF4606	0.41	-1.7
4,601,416	+		GFF4606	0.41	-0.9
4,601,416	+		GFF4606	0.41	+1.2
4,601,419	-		GFF4606	0.41	-0.6
4,601,424	-		GFF4606	0.42	-0.4
4,601,432	+		GFF4606	0.42	-0.3
4,601,432	+		GFF4606	0.42	-1.4
4,601,467	-		GFF4606	0.45	-0.1
4,601,471	+		GFF4606	0.45	-2.5
4,601,479	-		GFF4606	0.46	+0.6
4,601,479	-		GFF4606	0.46	+0.6
4,601,479	-		GFF4606	0.46	-0.2
4,601,479	-		GFF4606	0.46	-0.7
4,601,490	+		GFF4606	0.46	-1.0
4,601,503	+		GFF4606	0.47	-0.0
4,601,503	+		GFF4606	0.47	-1.5
4,601,503	+		GFF4606	0.47	+0.0
4,601,511	-		GFF4606	0.48	+0.2
4,601,535	-		GFF4606	0.50	+0.4
4,601,535	-		GFF4606	0.50	+0.3
4,601,572	+		GFF4606	0.52	-0.5
4,601,572	+		GFF4606	0.52	+2.0
4,601,575	+		GFF4606	0.53	-1.8
4,601,575	+		GFF4606	0.53	-0.0
4,601,593	+		GFF4606	0.54	-0.9
4,601,595	+		GFF4606	0.54	-0.1
4,601,603	-		GFF4606	0.55	+0.7
4,601,603	-		GFF4606	0.55	+0.6
4,601,603	-		GFF4606	0.55	-2.3
4,601,739	+		GFF4606	0.65	-1.1
4,601,747	-		GFF4606	0.65	-1.1
4,601,747	-		GFF4606	0.65	+1.0
4,601,754	-		GFF4606	0.66	+1.4
4,601,794	-		GFF4606	0.69	-0.8
4,601,832	-		GFF4606	0.71	-1.0
4,601,834	-		GFF4606	0.71	-1.0
4,601,842	-		GFF4606	0.72	-0.1
4,601,850	-		GFF4606	0.73	-0.0
4,601,850	-		GFF4606	0.73	+1.2