Strain Fitness in Sphingobium sp. HT1-2 around GFF4550

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,540,353	-				+0.0
4,540,353	-				+1.1
4,540,364	+				-2.3
4,540,382	+				+0.1
4,540,382	+				-0.1
4,540,395	+				+0.2
4,540,395	-				-1.1
4,540,403	-				+0.6
4,540,403	-				-0.1
4,540,403	-				+0.7
4,540,403	-				-1.6
4,540,403	-				-1.9
4,540,408	-				-1.0
4,540,412	+				+0.6
4,540,412	+				-0.0
4,540,450	-				-1.2
4,540,470	-				+0.4
4,540,525	+				-0.3
4,540,537	+				-1.4
4,540,538	+				-1.3
4,540,538	+				-0.3
4,540,546	-		GFF4549	0.11	-0.4
4,540,546	-		GFF4549	0.11	-0.6
4,540,550	+		GFF4549	0.11	-0.2
4,540,560	+		GFF4549	0.13	-0.5
4,540,561	+		GFF4549	0.13	+0.5
4,540,569	-		GFF4549	0.14	-2.5
4,540,586	+		GFF4549	0.16	-0.7
4,540,586	+		GFF4549	0.16	-0.8
4,540,586	+		GFF4549	0.16	+1.5
4,540,586	+		GFF4549	0.16	-0.9
4,540,594	-		GFF4549	0.17	-0.1
4,540,594	-		GFF4549	0.17	+0.4
4,540,598	+		GFF4549	0.17	+0.5
4,540,611	+		GFF4549	0.19	-1.1
4,540,630	+		GFF4549	0.21	-0.1
4,540,664	+		GFF4549	0.25	+0.0
4,540,664	+		GFF4549	0.25	-0.4
4,540,664	+		GFF4549	0.25	+1.8
4,540,671	+		GFF4549	0.26	-1.5
4,540,671	+		GFF4549	0.26	+1.6
4,540,671	-		GFF4549	0.26	-2.7
4,540,672	-		GFF4549	0.26	-0.5
4,540,672	-		GFF4549	0.26	+0.3
4,540,679	-		GFF4549	0.27	-0.3
4,540,679	-		GFF4549	0.27	-1.0
4,540,733	+		GFF4549	0.34	+0.5
4,540,741	-		GFF4549	0.35	-1.4
4,540,751	-		GFF4549	0.36	+0.8
4,540,754	+		GFF4549	0.37	-0.3
4,540,754	+		GFF4549	0.37	-0.6
4,540,754	+		GFF4549	0.37	-0.6
4,540,754	+		GFF4549	0.37	+1.1
4,540,754	+		GFF4549	0.37	+1.1
4,540,754	+		GFF4549	0.37	+0.7
4,540,762	-		GFF4549	0.38	+0.1
4,540,762	-		GFF4549	0.38	-1.3
4,540,762	-		GFF4549	0.38	-0.1
4,540,762	-		GFF4549	0.38	+1.1
4,540,762	-		GFF4549	0.38	-0.6
4,540,762	-		GFF4549	0.38	-0.9
4,540,762	-		GFF4549	0.38	-0.4
4,540,777	+		GFF4549	0.39	+0.4
4,540,813	+		GFF4549	0.44	-0.3
4,540,816	-		GFF4549	0.44	-0.9
4,540,816	-		GFF4549	0.44	+0.0
4,540,821	-		GFF4549	0.45	+0.2
4,540,821	-		GFF4549	0.45	-0.5
4,540,821	-		GFF4549	0.45	-1.6
4,540,821	-		GFF4549	0.45	-0.5
4,540,821	-		GFF4549	0.45	-1.6
4,540,821	-		GFF4549	0.45	+0.2
4,540,821	-		GFF4549	0.45	-0.6
4,540,821	-		GFF4549	0.45	-1.2
4,540,831	+		GFF4549	0.46	-0.9
4,540,831	+		GFF4549	0.46	-0.3
4,540,831	+		GFF4549	0.46	+0.2
4,540,839	-		GFF4549	0.47	-0.4
4,540,839	-		GFF4549	0.47	+0.1
4,540,839	-		GFF4549	0.47	-0.3
4,540,839	-		GFF4549	0.47	-0.7
4,540,875	+		GFF4549	0.52	+0.9
4,540,883	-		GFF4549	0.53	+0.2
4,540,892	+		GFF4549	0.54	-0.1
4,540,892	+		GFF4549	0.54	-0.6
4,540,903	+		GFF4549	0.55	-0.1
4,540,917	-		GFF4549	0.57	+0.2
4,540,933	-		GFF4549	0.59	-0.3
4,540,937	-		GFF4549	0.59	-0.5
4,540,944	+		GFF4549	0.60	-0.3
4,540,952	-		GFF4549	0.61	+0.2
4,540,952	-		GFF4549	0.61	+0.8
4,540,974	+		GFF4549	0.64	+0.9
4,540,974	+		GFF4549	0.64	-0.1
4,540,982	-		GFF4549	0.65	-0.3
4,540,982	-		GFF4549	0.65	+1.1
4,540,987	-		GFF4549	0.65	-1.0
4,540,987	-		GFF4549	0.65	+0.4
4,541,032	+		GFF4549	0.71	+0.1
4,541,042	+		GFF4549	0.72	-0.1
4,541,044	+		GFF4549	0.72	-2.3
4,541,044	+		GFF4549	0.72	-0.4
4,541,048	+		GFF4549	0.73	-0.4
4,541,050	-		GFF4549	0.73	+0.9
4,541,050	-		GFF4549	0.73	-0.5
4,541,052	-		GFF4549	0.73	-0.1
4,541,052	-		GFF4549	0.73	-0.4
4,541,059	+		GFF4549	0.74	-2.3
4,541,070	+		GFF4549	0.76	+0.1
4,541,120	+		GFF4549	0.82	-0.4
4,541,138	-		GFF4549	0.84	-1.1
4,541,180	+		GFF4549	0.89	+1.9
4,541,218	+				-0.6
4,541,218	+				+0.6
4,541,218	+				-0.3
4,541,223	+				-0.3
4,541,225	-				-1.4
4,541,225	-				-1.7
4,541,231	-				+0.0
4,541,231	-				-0.5
4,541,231	-				+0.4
4,541,272	+				-0.8
4,541,272	+				-1.0
4,541,272	+				-0.5
4,541,272	+				-1.5
4,541,274	-				-0.8
4,541,274	-				-1.2
4,541,280	-				-0.7
4,541,290	-				+0.7
4,541,290	-				-0.2
4,541,290	-				-1.3
4,541,298	-				-0.3
4,541,304	-				-0.1
4,541,337	+				-1.8
4,541,343	+				-0.2
4,541,345	-				-1.3
4,541,350	-				-1.1
4,541,351	+				+0.2
4,541,352	+				+0.3
4,541,356	+				+0.5
4,541,359	-				-0.1
4,541,360	-				-0.3
4,541,360	-				+0.0
4,541,411	-				-2.1
4,541,414	-				-1.4
4,541,421	+				-0.8
4,541,421	+				-1.7
4,541,421	+				+0.0
4,541,421	+				-0.4
4,541,424	-				-2.5
4,541,429	-		GFF4550	0.10	-0.8
4,541,436	-		GFF4550	0.11	+0.5
4,541,461	-		GFF4550	0.15	-0.6
4,541,498	-		GFF4550	0.20	-0.2
4,541,498	-		GFF4550	0.20	-0.8
4,541,522	+		GFF4550	0.23	+0.3
4,541,524	+		GFF4550	0.24	+0.1
4,541,524	+		GFF4550	0.24	-0.3
4,541,532	+		GFF4550	0.25	-1.6
4,541,532	-		GFF4550	0.25	+0.4
4,541,539	+		GFF4550	0.26	-0.9
4,541,541	+		GFF4550	0.26	+0.1
4,541,541	+		GFF4550	0.26	-2.0
4,541,541	+		GFF4550	0.26	-1.1
4,541,541	+		GFF4550	0.26	-0.4
4,541,541	+		GFF4550	0.26	-0.8
4,541,546	+		GFF4550	0.27	-0.3
4,541,546	+		GFF4550	0.27	-0.8
4,541,546	+		GFF4550	0.27	+0.2
4,541,546	+		GFF4550	0.27	-0.4
4,541,547	-		GFF4550	0.27	+0.2
4,541,547	-		GFF4550	0.27	-2.3
4,541,549	-		GFF4550	0.27	+0.4
4,541,549	-		GFF4550	0.27	-0.6
4,541,566	-		GFF4550	0.29	-1.6
4,541,573	+		GFF4550	0.30	-3.0
4,541,581	-		GFF4550	0.31	+0.3
4,541,585	+		GFF4550	0.32	-1.3
4,541,591	-		GFF4550	0.33	+0.0
4,541,593	+		GFF4550	0.33	+0.2
4,541,593	-		GFF4550	0.33	-1.5
4,541,606	-		GFF4550	0.35	-0.5
4,541,614	-		GFF4550	0.36	-0.9
4,541,646	-		GFF4550	0.40	-0.7
4,541,648	-		GFF4550	0.41	+0.6
4,541,653	+		GFF4550	0.41	+1.3
4,541,661	-		GFF4550	0.42	+1.4
4,541,661	-		GFF4550	0.42	+0.4
4,541,661	-		GFF4550	0.42	+0.6
4,541,667	-		GFF4550	0.43	-2.1
4,541,670	+		GFF4550	0.44	+0.1
4,541,670	+		GFF4550	0.44	-1.4
4,541,670	+		GFF4550	0.44	+0.7
4,541,670	+		GFF4550	0.44	-1.4
4,541,678	-		GFF4550	0.45	-2.0
4,541,678	-		GFF4550	0.45	+0.6
4,541,678	-		GFF4550	0.45	+1.8
4,541,678	-		GFF4550	0.45	-1.6
4,541,708	-		GFF4550	0.49	+0.8
4,541,713	+		GFF4550	0.50	-0.3
4,541,713	+		GFF4550	0.50	+0.6
4,541,721	-		GFF4550	0.51	-0.6
4,541,728	+		GFF4550	0.52	-0.7
4,541,728	+		GFF4550	0.52	+0.9
4,541,736	-		GFF4550	0.53	-1.6
4,541,736	-		GFF4550	0.53	-0.1
4,541,736	-		GFF4550	0.53	+1.3
4,541,784	+		GFF4550	0.59	-2.1
4,541,808	+		GFF4550	0.63	-2.5
4,541,808	+		GFF4550	0.63	-2.3
4,541,816	-		GFF4550	0.64	-2.3
4,541,816	-		GFF4550	0.64	+0.8
4,541,816	-		GFF4550	0.64	+0.1
4,541,816	-		GFF4550	0.64	-0.0
4,541,858	+		GFF4550	0.70	-0.1
4,541,870	+		GFF4550	0.71	-0.6
4,541,875	+		GFF4550	0.72	-1.6
4,541,878	-		GFF4550	0.72	+0.2
4,541,878	-		GFF4550	0.72	-2.3
4,541,899	-		GFF4550	0.75	-1.9
4,541,899	-		GFF4550	0.75	+0.1
4,541,904	-		GFF4550	0.76	-1.3
4,541,906	+		GFF4550	0.76	-1.6
4,541,906	+		GFF4550	0.76	-0.4
4,541,909	-		GFF4550	0.77	-1.5
4,541,911	+		GFF4550	0.77	-1.5
4,541,911	+		GFF4550	0.77	-2.0
4,541,911	+		GFF4550	0.77	-1.4
4,541,911	+		GFF4550	0.77	-0.8
4,541,919	-		GFF4550	0.78	-2.1
4,541,919	-		GFF4550	0.78	-0.3
4,541,919	-		GFF4550	0.78	-1.4
4,541,926	+		GFF4550	0.79	+0.5
4,541,954	+		GFF4550	0.83	-1.7
4,541,954	+		GFF4550	0.83	-0.9
4,541,954	+		GFF4550	0.83	-0.0
4,541,954	+		GFF4550	0.83	-1.8
4,541,954	+		GFF4550	0.83	+0.3
4,541,962	-		GFF4550	0.84	-1.8
4,541,962	-		GFF4550	0.84	-0.6
4,541,962	-		GFF4550	0.84	-0.0
4,541,962	-		GFF4550	0.84	-0.3
4,541,962	-		GFF4550	0.84	+0.6
4,541,962	-		GFF4550	0.84	-1.0
4,541,962	-		GFF4550	0.84	-0.1
4,541,962	-		GFF4550	0.84	-0.6
4,541,962	-		GFF4550	0.84	+0.0
4,541,962	-		GFF4550	0.84	+0.2
4,541,981	-		GFF4550	0.87	-0.1
4,542,003	-		GFF4550	0.90	+0.2
4,542,003	-		GFF4550	0.90	-0.0
4,542,020	+				-0.6
4,542,020	+				-0.3
4,542,020	+				-1.6
4,542,020	+				-1.9
4,542,028	-				-0.1
4,542,038	+				-1.2
4,542,043	+				-0.4
4,542,051	-				-0.0
4,542,066	-				-0.3
4,542,072	+				+0.8
4,542,076	+				+0.4
4,542,093	-				+0.6
4,542,095	-				+2.1
4,542,119	+				-0.8
4,542,119	+				-0.3
4,542,120	+				+0.6
4,542,120	+				-0.7
4,542,120	+				+0.1
4,542,123	-				-1.0
4,542,128	-		GFF4551	0.11	-1.5
4,542,128	-		GFF4551	0.11	-0.6
4,542,128	-		GFF4551	0.11	-0.3
4,542,152	+		GFF4551	0.15	-0.6
4,542,168	+		GFF4551	0.18	+0.4
4,542,171	-		GFF4551	0.19	-0.6
4,542,185	+		GFF4551	0.22	-0.0
4,542,191	-		GFF4551	0.23	+0.6
4,542,193	-		GFF4551	0.23	-1.8
4,542,212	+		GFF4551	0.27	+0.3
4,542,212	+		GFF4551	0.27	-0.7
4,542,220	-		GFF4551	0.28	-0.3
4,542,220	-		GFF4551	0.28	-1.2
4,542,220	-		GFF4551	0.28	-1.6
4,542,237	-		GFF4551	0.31	+0.6
4,542,243	-		GFF4551	0.33	-0.2
4,542,244	-		GFF4551	0.33	-0.4
4,542,244	-		GFF4551	0.33	-2.3
4,542,244	-		GFF4551	0.33	+1.1
4,542,244	-		GFF4551	0.33	-0.3
4,542,265	+		GFF4551	0.37	-0.7
4,542,285	+		GFF4551	0.41	+0.5
4,542,293	-		GFF4551	0.42	-0.5
4,542,313	+		GFF4551	0.46	+0.4
4,542,315	-		GFF4551	0.46	-2.8
4,542,321	-		GFF4551	0.47	+0.3
4,542,333	+		GFF4551	0.50	-0.8
4,542,333	+		GFF4551	0.50	+1.2
4,542,333	+		GFF4551	0.50	+0.5
4,542,333	+		GFF4551	0.50	+0.1
4,542,333	+		GFF4551	0.50	-1.5
4,542,333	+		GFF4551	0.50	-0.7
4,542,333	+		GFF4551	0.50	-2.5
4,542,333	+		GFF4551	0.50	-0.9
4,542,341	-		GFF4551	0.51	-0.7
4,542,341	-		GFF4551	0.51	-0.4
4,542,341	-		GFF4551	0.51	-0.2
4,542,341	-		GFF4551	0.51	+0.1
4,542,341	-		GFF4551	0.51	+0.4
4,542,350	+		GFF4551	0.53	+0.4
4,542,350	+		GFF4551	0.53	+0.4
4,542,362	-		GFF4551	0.55	-1.7
4,542,375	+		GFF4551	0.58	-0.6
4,542,395	+		GFF4551	0.61	-1.7
4,542,395	+		GFF4551	0.61	-1.2
4,542,403	-		GFF4551	0.63	+0.5
4,542,447	+		GFF4551	0.71	+0.3
4,542,447	+		GFF4551	0.71	-0.1
4,542,447	+		GFF4551	0.71	-1.3
4,542,447	+		GFF4551	0.71	-0.5
4,542,447	+		GFF4551	0.71	-2.5
4,542,447	+		GFF4551	0.71	-0.7
4,542,447	+		GFF4551	0.71	-0.7
4,542,447	+		GFF4551	0.71	+0.6
4,542,455	-		GFF4551	0.73	-1.7
4,542,455	-		GFF4551	0.73	-0.7
4,542,455	-		GFF4551	0.73	-0.5
4,542,455	-		GFF4551	0.73	-0.7
4,542,455	-		GFF4551	0.73	-0.5
4,542,455	-		GFF4551	0.73	+0.6
4,542,455	-		GFF4551	0.73	+0.8
4,542,455	-		GFF4551	0.73	+0.5
4,542,455	-		GFF4551	0.73	-0.8
4,542,472	-		GFF4551	0.76	-1.9
4,542,487	-		GFF4551	0.79	-0.3
4,542,488	+		GFF4551	0.79	-0.4
4,542,488	+		GFF4551	0.79	-1.1
4,542,488	+		GFF4551	0.79	+0.8
4,542,491	+		GFF4551	0.80	-0.7
4,542,496	-		GFF4551	0.80	-1.3
4,542,543	-		GFF4551	0.89	-2.1
4,542,567	-				-0.2
4,542,609	+				+1.4
4,542,614	-				-0.7
4,542,635	-				+0.5
4,542,647	+				-0.0
4,542,647	+				-1.4
4,542,660	-				-1.2
4,542,683	+				-0.8
4,542,691	-				+0.1
4,542,737	+		GFF4552	0.11	-0.7
4,542,745	-		GFF4552	0.12	+0.4
4,542,754	+		GFF4552	0.12	-0.5
4,542,768	-		GFF4552	0.13	-1.7
4,542,811	-		GFF4552	0.17	-1.3
4,542,839	-		GFF4552	0.19	-0.4
4,542,854	-		GFF4552	0.20	-1.1
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4,542,857	+		GFF4552	0.21	+0.6
4,542,880	-		GFF4552	0.23	-1.8
4,542,889	-		GFF4552	0.23	-1.1
4,542,891	-		GFF4552	0.23	-0.4
4,542,899	-		GFF4552	0.24	-0.7
4,542,908	-		GFF4552	0.25	+0.0
4,542,913	-		GFF4552	0.25	-2.2
4,542,926	+		GFF4552	0.26	-1.7
4,542,940	+		GFF4552	0.27	+0.9
4,542,948	-		GFF4552	0.28	-1.0
4,542,948	-		GFF4552	0.28	-0.2
4,542,990	-		GFF4552	0.32	-0.7
4,542,990	-		GFF4552	0.32	+1.2
4,543,016	+		GFF4552	0.34	-1.5
4,543,026	+		GFF4552	0.34	+1.3
4,543,026	+		GFF4552	0.34	-1.1
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4,543,026	+		GFF4552	0.34	-0.6
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4,543,034	-		GFF4552	0.35	-0.5
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4,543,034	-		GFF4552	0.35	-2.3
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4,543,034	-		GFF4552	0.35	+0.8
4,543,034	-		GFF4552	0.35	-2.0
4,543,047	+		GFF4552	0.36	-1.5