Strain Fitness in Sphingobium sp. HT1-2 around GFF4534

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,524,602	+		GFF4533	0.33	+0.6
4,524,612	+		GFF4533	0.33	-0.4
4,524,637	+		GFF4533	0.35	-0.7
4,524,637	+		GFF4533	0.35	-2.4
4,524,642	+		GFF4533	0.35	-0.6
4,524,647	+		GFF4533	0.36	+0.7
4,524,647	+		GFF4533	0.36	-1.5
4,524,673	-		GFF4533	0.37	-0.2
4,524,679	-		GFF4533	0.38	-0.8
4,524,686	-		GFF4533	0.38	-1.4
4,524,695	+		GFF4533	0.39	-0.5
4,524,703	-		GFF4533	0.39	-0.3
4,524,703	-		GFF4533	0.39	+0.0
4,524,774	+		GFF4533	0.44	-1.5
4,524,787	+		GFF4533	0.45	-1.1
4,524,788	+		GFF4533	0.45	-1.4
4,524,795	-		GFF4533	0.46	+0.1
4,524,796	-		GFF4533	0.46	-0.6
4,524,804	+		GFF4533	0.46	-0.6
4,524,813	-		GFF4533	0.47	-0.9
4,524,813	-		GFF4533	0.47	+0.4
4,524,827	+		GFF4533	0.48	-1.5
4,524,827	-		GFF4533	0.48	-0.3
4,524,840	-		GFF4533	0.49	-0.2
4,524,898	+		GFF4533	0.53	-0.0
4,524,913	+		GFF4533	0.54	+0.2
4,524,929	+		GFF4533	0.55	+1.2
4,524,938	+		GFF4533	0.56	+0.2
4,524,938	+		GFF4533	0.56	-2.1
4,524,948	+		GFF4533	0.56	+0.9
4,524,991	+		GFF4533	0.59	-1.3
4,524,999	+		GFF4533	0.60	-1.6
4,524,999	+		GFF4533	0.60	-2.7
4,525,002	-		GFF4533	0.60	+0.5
4,525,002	-		GFF4533	0.60	-0.2
4,525,002	-		GFF4533	0.60	+1.0
4,525,007	-		GFF4533	0.60	-1.2
4,525,007	-		GFF4533	0.60	+0.0
4,525,007	-		GFF4533	0.60	+1.2
4,525,007	-		GFF4533	0.60	+0.3
4,525,007	-		GFF4533	0.60	-0.5
4,525,009	+		GFF4533	0.61	-0.3
4,525,020	-		GFF4533	0.61	-1.5
4,525,044	+		GFF4533	0.63	+0.1
4,525,045	-		GFF4533	0.63	-1.0
4,525,086	-		GFF4533	0.66	-0.5
4,525,087	+		GFF4533	0.66	-0.9
4,525,087	+		GFF4533	0.66	+0.2
4,525,095	-		GFF4533	0.66	-0.6
4,525,096	+		GFF4533	0.67	-0.5
4,525,114	+		GFF4533	0.68	-0.3
4,525,122	-		GFF4533	0.68	+0.3
4,525,126	+		GFF4533	0.69	+0.8
4,525,134	-		GFF4533	0.69	-2.4
4,525,150	-		GFF4533	0.70	-0.0
4,525,150	-		GFF4533	0.70	-0.4
4,525,177	+		GFF4533	0.72	-0.2
4,525,191	+		GFF4533	0.73	+0.2
4,525,199	+		GFF4533	0.74	+0.1
4,525,199	+		GFF4533	0.74	-0.8
4,525,240	-		GFF4533	0.76	-1.9
4,525,256	+		GFF4533	0.78	-0.2
4,525,264	+		GFF4533	0.78	-0.0
4,525,272	-		GFF4533	0.79	+0.3
4,525,272	-		GFF4533	0.79	-0.6
4,525,287	+		GFF4533	0.80	+0.4
4,525,289	-		GFF4533	0.80	-0.2
4,525,290	-		GFF4533	0.80	+0.1
4,525,295	-		GFF4533	0.80	-2.0
4,525,295	-		GFF4533	0.80	-1.5
4,525,296	+		GFF4533	0.80	-1.4
4,525,299	-		GFF4533	0.81	+0.3
4,525,338	+		GFF4533	0.83	-0.4
4,525,339	+		GFF4533	0.83	-0.2
4,525,348	-		GFF4533	0.84	+0.7
4,525,349	+		GFF4533	0.84	-0.3
4,525,390	-		GFF4533	0.87	+0.8
4,525,419	+		GFF4533	0.89	-1.6
4,525,430	+		GFF4533	0.90	-0.8
4,525,430	+		GFF4533	0.90	-1.4
4,525,435	+		GFF4533	0.90	-0.1
4,525,438	-				-0.0
4,525,448	-				-0.8
4,525,461	+				-0.6
4,525,461	+				+0.3
4,525,464	-				-2.8
4,525,469	-				+0.2
4,525,469	-				-0.1
4,525,469	-				+0.3
4,525,469	-				-1.5
4,525,482	+				-1.0
4,525,493	+				-1.3
4,525,524	-				-1.7
4,525,531	+				-1.9
4,525,531	+				+0.2
4,525,534	+				-2.2
4,525,539	-				-0.8
4,525,542	-				-0.5
4,525,542	-				-0.2
4,525,544	+				+0.6
4,525,577	+				-2.0
4,525,582	+				-0.9
4,525,584	-				-1.6
4,525,607	+				-2.9
4,525,619	+				+0.3
4,525,632	+				+0.4
4,525,635	-				-0.4
4,525,671	-				+0.2
4,525,671	-				+0.7
4,525,673	+				-0.2
4,525,681	-				-0.4
4,525,688	-				-1.5
4,525,688	-				-0.4
4,525,697	-				+0.3
4,525,707	-				+0.2
4,525,730	-				-0.7
4,525,740	-				-0.8
4,525,745	-				-0.2
4,525,754	-				+0.2
4,525,754	-				-2.4
4,525,764	+		GFF4534	0.10	-0.0
4,525,777	+		GFF4534	0.11	+0.2
4,525,777	+		GFF4534	0.11	-0.3
4,525,777	+		GFF4534	0.11	-1.6
4,525,782	+		GFF4534	0.11	-0.6
4,525,787	+		GFF4534	0.12	-0.6
4,525,790	-		GFF4534	0.12	-1.4
4,525,795	-		GFF4534	0.12	-1.8
4,525,795	-		GFF4534	0.12	-0.5
4,525,795	-		GFF4534	0.12	+0.0
4,525,812	+		GFF4534	0.13	-0.4
4,525,819	+		GFF4534	0.13	-1.9
4,525,819	+		GFF4534	0.13	-0.5
4,525,827	-		GFF4534	0.14	-0.8
4,525,842	-		GFF4534	0.15	-0.7
4,525,845	+		GFF4534	0.15	+0.1
4,525,853	-		GFF4534	0.16	-2.0
4,525,853	-		GFF4534	0.16	+0.8
4,525,853	-		GFF4534	0.16	+1.2
4,525,859	-		GFF4534	0.16	-2.1
4,525,861	+		GFF4534	0.16	-2.0
4,525,869	-		GFF4534	0.16	-0.8
4,525,877	+		GFF4534	0.17	-1.4
4,525,885	+		GFF4534	0.17	-0.6
4,525,885	+		GFF4534	0.17	-1.0
4,525,885	+		GFF4534	0.17	-0.7
4,525,885	+		GFF4534	0.17	-1.1
4,525,895	+		GFF4534	0.18	-1.3
4,525,906	+		GFF4534	0.19	-0.7
4,525,906	+		GFF4534	0.19	-1.5
4,525,906	+		GFF4534	0.19	-0.1
4,525,920	-		GFF4534	0.20	-2.7
4,525,948	-		GFF4534	0.21	-2.4
4,525,948	-		GFF4534	0.21	-0.5
4,525,987	+		GFF4534	0.24	-1.9
4,526,003	-		GFF4534	0.25	-1.1
4,526,025	+		GFF4534	0.26	-2.1
4,526,028	-		GFF4534	0.26	-1.0
4,526,066	-		GFF4534	0.28	-2.3
4,526,088	+		GFF4534	0.30	+0.2
4,526,098	-		GFF4534	0.30	+0.5
4,526,101	-		GFF4534	0.30	-1.8
4,526,103	+		GFF4534	0.31	-2.0
4,526,103	+		GFF4534	0.31	-0.2
4,526,111	-		GFF4534	0.31	-1.5
4,526,111	-		GFF4534	0.31	-0.6
4,526,111	-		GFF4534	0.31	-0.6
4,526,111	-		GFF4534	0.31	+0.1
4,526,111	-		GFF4534	0.31	-0.4
4,526,111	-		GFF4534	0.31	+0.8
4,526,118	+		GFF4534	0.32	-1.5
4,526,121	-		GFF4534	0.32	-0.9
4,526,126	-		GFF4534	0.32	+0.9
4,526,155	+		GFF4534	0.34	+0.2
4,526,158	+		GFF4534	0.34	-1.2
4,526,163	+		GFF4534	0.34	-1.6
4,526,163	-		GFF4534	0.34	-1.9
4,526,164	-		GFF4534	0.34	-0.6
4,526,166	-		GFF4534	0.34	+0.8
4,526,193	+		GFF4534	0.36	-1.0
4,526,204	+		GFF4534	0.37	+0.9
4,526,206	+		GFF4534	0.37	-0.2
4,526,214	-		GFF4534	0.37	-0.8
4,526,223	-		GFF4534	0.38	+0.4
4,526,260	-		GFF4534	0.40	-1.6
4,526,262	-		GFF4534	0.40	-0.6
4,526,264	+		GFF4534	0.40	-2.7
4,526,269	-		GFF4534	0.41	-1.1
4,526,284	+		GFF4534	0.42	-1.8
4,526,284	+		GFF4534	0.42	-1.0
4,526,291	-		GFF4534	0.42	+0.5
4,526,292	-		GFF4534	0.42	-2.3
4,526,292	-		GFF4534	0.42	+0.1
4,526,292	-		GFF4534	0.42	+1.0
4,526,299	+		GFF4534	0.42	-0.7
4,526,307	-		GFF4534	0.43	-0.6
4,526,340	-		GFF4534	0.45	+0.9
4,526,347	+		GFF4534	0.45	-0.7
4,526,355	-		GFF4534	0.46	-0.3
4,526,359	-		GFF4534	0.46	-1.0
4,526,360	-		GFF4534	0.46	-0.2
4,526,364	+		GFF4534	0.46	-0.3
4,526,367	-		GFF4534	0.47	-1.5
4,526,391	+		GFF4534	0.48	-0.6
4,526,393	+		GFF4534	0.48	-0.6
4,526,394	+		GFF4534	0.48	-0.9
4,526,394	+		GFF4534	0.48	-1.6
4,526,398	-		GFF4534	0.48	-1.6
4,526,404	+		GFF4534	0.49	-0.0
4,526,404	+		GFF4534	0.49	-0.9
4,526,412	-		GFF4534	0.49	+0.6
4,526,483	-		GFF4534	0.54	+0.1
4,526,493	-		GFF4534	0.54	+0.3
4,526,501	+		GFF4534	0.55	-0.7
4,526,510	+		GFF4534	0.55	-0.8
4,526,518	+		GFF4534	0.56	-1.3
4,526,518	-		GFF4534	0.56	+0.3
4,526,520	+		GFF4534	0.56	-1.3
4,526,520	+		GFF4534	0.56	+1.0
4,526,523	+		GFF4534	0.56	+1.3
4,526,526	-		GFF4534	0.56	-2.2
4,526,526	-		GFF4534	0.56	+0.2
4,526,526	-		GFF4534	0.56	-0.0
4,526,528	-		GFF4534	0.56	-0.4
4,526,538	-		GFF4534	0.57	-0.6
4,526,538	-		GFF4534	0.57	-2.2
4,526,538	-		GFF4534	0.57	-0.4
4,526,557	+		GFF4534	0.58	-0.9
4,526,565	-		GFF4534	0.59	-0.3
4,526,575	-		GFF4534	0.59	+0.3
4,526,619	+		GFF4534	0.62	-1.5
4,526,619	+		GFF4534	0.62	-1.4
4,526,652	+		GFF4534	0.64	-1.6
4,526,654	-		GFF4534	0.64	-0.6
4,526,666	-		GFF4534	0.65	-1.1
4,526,674	-		GFF4534	0.65	-1.0
4,526,691	-		GFF4534	0.66	-0.4
4,526,693	-		GFF4534	0.66	-0.4
4,526,711	-		GFF4534	0.67	-0.6
4,526,711	-		GFF4534	0.67	+0.2
4,526,722	+		GFF4534	0.68	-0.8
4,526,722	+		GFF4534	0.68	+0.5
4,526,730	-		GFF4534	0.68	+0.7
4,526,732	+		GFF4534	0.69	-0.8
4,526,758	-		GFF4534	0.70	-0.6
4,526,761	+		GFF4534	0.70	-0.8
4,526,764	-		GFF4534	0.71	+0.5
4,526,769	-		GFF4534	0.71	+0.0
4,526,795	+		GFF4534	0.72	+0.7
4,526,798	-		GFF4534	0.73	+0.2
4,526,798	-		GFF4534	0.73	-0.0
4,526,798	-		GFF4534	0.73	-0.2
4,526,800	+		GFF4534	0.73	-1.3
4,526,800	+		GFF4534	0.73	-0.9
4,526,805	+		GFF4534	0.73	-2.5
4,526,808	-		GFF4534	0.73	-0.6
4,526,808	-		GFF4534	0.73	-2.0
4,526,808	-		GFF4534	0.73	-2.4
4,526,823	+		GFF4534	0.74	+0.2
4,526,849	+		GFF4534	0.76	-0.4
4,526,857	-		GFF4534	0.76	+0.2
4,526,861	+		GFF4534	0.76	-1.3
4,526,866	+		GFF4534	0.77	-0.7
4,526,866	+		GFF4534	0.77	-0.7
4,526,874	-		GFF4534	0.77	+0.1
4,526,898	-		GFF4534	0.79	+0.3
4,526,936	+		GFF4534	0.81	-0.8
4,526,950	+		GFF4534	0.82	-0.6
4,526,999	+		GFF4534	0.85	+0.2
4,526,999	+		GFF4534	0.85	-0.6
4,527,017	+		GFF4534	0.86	-0.5
4,527,036	+		GFF4534	0.87	-0.4
4,527,060	-		GFF4534	0.88	+0.9
4,527,072	-		GFF4534	0.89	-1.4
4,527,072	-		GFF4534	0.89	-0.7
4,527,093	+				-0.8
4,527,108	+				-0.2
4,527,108	+				-0.4
4,527,109	-				+0.4
4,527,116	-				-0.4
4,527,116	-				-0.6
4,527,121	+				+0.6
4,527,126	+				-1.1
4,527,126	+				-0.0
4,527,143	-				+0.7
4,527,163	+				-0.7
4,527,163	+				-2.0
4,527,165	+				-0.4
4,527,172	+				-0.1
4,527,173	-				-1.4
4,527,177	+				+0.1
4,527,180	-				-1.8
4,527,180	-				-1.2
4,527,184	+				+1.1
4,527,189	+				+0.3
4,527,190	-				-0.9
4,527,192	-				-2.3
4,527,197	-				-0.8
4,527,204	+				-2.1
4,527,214	-				-1.0
4,527,217	+				-0.7
4,527,217	+				-0.4
4,527,225	-				-1.4
4,527,225	-				+0.3
4,527,252	-				+0.3
4,527,267	+				-1.4
4,527,267	+				+1.2
4,527,269	+				+0.3
4,527,272	+				-0.2
4,527,272	-				-1.9
4,527,275	-				+0.4
4,527,275	-				-2.1
4,527,275	-				-0.4
4,527,282	+				+0.4
4,527,282	-				+0.1
4,527,301	-				+0.1
4,527,308	+				+0.2
4,527,315	+				-1.7
4,527,325	+				-0.4
4,527,351	+				+0.4
4,527,370	+				-0.4
4,527,370	+				-1.1
4,527,370	+				+0.0
4,527,378	-				-1.8
4,527,378	-				+0.4
4,527,378	-				-1.8
4,527,378	-				-0.5
4,527,380	-				+0.1
4,527,411	-				-0.7
4,527,449	-				-1.3
4,527,449	-				+0.1
4,527,509	+				-1.0
4,527,510	+				-1.8
4,527,510	+				-1.0
4,527,510	+				+0.2
4,527,523	-				+0.0
4,527,573	-				-0.3
4,527,585	+				+0.0
4,527,588	+				-0.3
4,527,593	-				+0.4
4,527,593	-				-2.1
4,527,593	-				+0.4
4,527,598	-				+0.9
4,527,644	+		GFF4535	0.13	-0.2
4,527,648	+		GFF4535	0.14	-0.0
4,527,648	+		GFF4535	0.14	-1.1
4,527,648	+		GFF4535	0.14	-1.9
4,527,656	-		GFF4535	0.15	+0.1
4,527,656	-		GFF4535	0.15	-0.3
4,527,656	-		GFF4535	0.15	-1.5
4,527,702	+		GFF4535	0.19	-0.7
4,527,751	+		GFF4535	0.23	-2.1
4,527,754	-		GFF4535	0.24	-0.4
4,527,774	-		GFF4535	0.25	-1.6
4,527,816	-		GFF4535	0.29	-1.0
4,527,827	+		GFF4535	0.30	+0.9
4,527,847	-		GFF4535	0.32	-0.3
4,527,857	+		GFF4535	0.33	-1.6
4,527,865	-		GFF4535	0.34	+0.4
4,527,959	+		GFF4535	0.43	+0.4
4,527,967	-		GFF4535	0.43	-1.9
4,527,973	-		GFF4535	0.44	+0.6
4,527,980	-		GFF4535	0.45	-1.7
4,527,998	+		GFF4535	0.46	-0.1
4,528,003	+		GFF4535	0.47	+0.7
4,528,003	+		GFF4535	0.47	-0.5
4,528,028	+		GFF4535	0.49	-0.9
4,528,068	+		GFF4535	0.53	+0.5
4,528,068	+		GFF4535	0.53	-1.1
4,528,076	-		GFF4535	0.53	-0.3
4,528,076	-		GFF4535	0.53	+0.7
4,528,076	-		GFF4535	0.53	-0.3
4,528,076	-		GFF4535	0.53	-0.4
4,528,076	-		GFF4535	0.53	+0.3
4,528,076	-		GFF4535	0.53	+0.0
4,528,086	+		GFF4535	0.54	+0.3
4,528,089	+		GFF4535	0.55	-0.6
4,528,110	+		GFF4535	0.57	-0.1
4,528,111	+		GFF4535	0.57	+0.1
4,528,127	+		GFF4535	0.58	-1.1
4,528,132	+		GFF4535	0.59	-0.3
4,528,132	+		GFF4535	0.59	-0.1
4,528,152	+		GFF4535	0.60	-2.5
4,528,152	+		GFF4535	0.60	+1.1
4,528,152	+		GFF4535	0.60	+0.8
4,528,160	-		GFF4535	0.61	-0.5
4,528,170	+		GFF4535	0.62	-0.6
4,528,170	+		GFF4535	0.62	-0.7
4,528,170	+		GFF4535	0.62	-1.7
4,528,178	-		GFF4535	0.63	-1.6
4,528,185	-		GFF4535	0.63	-1.4
4,528,187	+		GFF4535	0.64	+1.2
4,528,187	+		GFF4535	0.64	+1.2
4,528,187	+		GFF4535	0.64	-0.4
4,528,187	+		GFF4535	0.64	-0.1
4,528,195	-		GFF4535	0.64	-0.1
4,528,195	-		GFF4535	0.64	-0.2
4,528,195	-		GFF4535	0.64	+0.3
4,528,202	+		GFF4535	0.65	-0.6
4,528,202	+		GFF4535	0.65	+0.1
4,528,202	+		GFF4535	0.65	-1.4
4,528,202	+		GFF4535	0.65	-0.2
4,528,202	+		GFF4535	0.65	-0.8
4,528,202	+		GFF4535	0.65	+0.1
4,528,202	+		GFF4535	0.65	+0.6
4,528,202	+		GFF4535	0.65	-0.7
4,528,202	+		GFF4535	0.65	-2.0
4,528,202	+		GFF4535	0.65	-2.4
4,528,202	+		GFF4535	0.65	-0.2
4,528,202	+		GFF4535	0.65	+1.1
4,528,202	+		GFF4535	0.65	-1.2
4,528,210	-		GFF4535	0.66	+0.8
4,528,210	-		GFF4535	0.66	-0.5
4,528,210	-		GFF4535	0.66	-0.3
4,528,210	-		GFF4535	0.66	-1.7
4,528,210	-		GFF4535	0.66	-0.5
4,528,210	-		GFF4535	0.66	+1.5
4,528,210	-		GFF4535	0.66	-0.7
4,528,210	-		GFF4535	0.66	-0.4
4,528,210	-		GFF4535	0.66	-0.8
4,528,210	-		GFF4535	0.66	-0.8
4,528,210	-		GFF4535	0.66	-0.3
4,528,210	-		GFF4535	0.66	-0.0
4,528,210	-		GFF4535	0.66	-0.9
4,528,210	-		GFF4535	0.66	+0.6
4,528,225	+		GFF4535	0.67	-1.4
4,528,239	+		GFF4535	0.68	-1.5
4,528,245	+		GFF4535	0.69	-0.4
4,528,245	+		GFF4535	0.69	-1.7
4,528,247	-		GFF4535	0.69	-0.5
4,528,250	+		GFF4535	0.69	-0.8
4,528,250	+		GFF4535	0.69	-0.1