Strain Fitness in Sphingobium sp. HT1-2 around GFF4515

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,510,287	+		GFF4514	0.59	-0.7
4,510,299	-		GFF4514	0.59	+0.7
4,510,316	+		GFF4514	0.60	-1.6
4,510,330	+		GFF4514	0.61	-0.4
4,510,330	+		GFF4514	0.61	-0.8
4,510,338	-		GFF4514	0.61	-1.0
4,510,368	+		GFF4514	0.63	-0.6
4,510,373	+		GFF4514	0.63	+1.1
4,510,399	+		GFF4514	0.65	+1.0
4,510,400	-		GFF4514	0.65	+1.3
4,510,400	-		GFF4514	0.65	-0.9
4,510,405	-		GFF4514	0.65	+0.6
4,510,410	-		GFF4514	0.65	+0.2
4,510,414	+		GFF4514	0.65	-1.2
4,510,414	+		GFF4514	0.65	-0.7
4,510,414	+		GFF4514	0.65	+0.8
4,510,421	+		GFF4514	0.66	+0.3
4,510,421	+		GFF4514	0.66	+0.2
4,510,421	+		GFF4514	0.66	+0.8
4,510,422	-		GFF4514	0.66	+0.6
4,510,422	-		GFF4514	0.66	+0.1
4,510,423	+		GFF4514	0.66	-1.7
4,510,428	+		GFF4514	0.66	-0.2
4,510,428	+		GFF4514	0.66	-1.7
4,510,428	+		GFF4514	0.66	-0.3
4,510,428	+		GFF4514	0.66	+0.4
4,510,428	+		GFF4514	0.66	-0.8
4,510,428	+		GFF4514	0.66	+0.0
4,510,428	+		GFF4514	0.66	-1.5
4,510,428	+		GFF4514	0.66	-0.3
4,510,436	-		GFF4514	0.67	-0.7
4,510,436	-		GFF4514	0.67	+0.4
4,510,436	-		GFF4514	0.67	-2.8
4,510,436	-		GFF4514	0.67	-1.0
4,510,436	-		GFF4514	0.67	+0.6
4,510,436	-		GFF4514	0.67	-1.2
4,510,475	+		GFF4514	0.69	-1.0
4,510,525	+		GFF4514	0.71	-0.3
4,510,525	+		GFF4514	0.71	-0.8
4,510,540	+		GFF4514	0.72	+0.4
4,510,540	+		GFF4514	0.72	+0.4
4,510,540	+		GFF4514	0.72	-0.1
4,510,543	-		GFF4514	0.72	-1.6
4,510,548	-		GFF4514	0.72	+1.1
4,510,548	-		GFF4514	0.72	+0.6
4,510,548	-		GFF4514	0.72	-0.1
4,510,566	-		GFF4514	0.73	-0.2
4,510,566	-		GFF4514	0.73	-0.4
4,510,568	+		GFF4514	0.74	+0.9
4,510,571	-		GFF4514	0.74	+0.4
4,510,576	-		GFF4514	0.74	-1.0
4,510,579	+		GFF4514	0.74	+0.1
4,510,589	+		GFF4514	0.75	+1.2
4,510,589	+		GFF4514	0.75	-1.7
4,510,593	-		GFF4514	0.75	-0.8
4,510,597	-		GFF4514	0.75	-0.2
4,510,597	-		GFF4514	0.75	-0.5
4,510,605	+		GFF4514	0.75	-3.2
4,510,608	-		GFF4514	0.76	-0.6
4,510,608	-		GFF4514	0.76	+0.1
4,510,610	+		GFF4514	0.76	-0.9
4,510,615	+		GFF4514	0.76	-0.1
4,510,615	+		GFF4514	0.76	-0.1
4,510,615	+		GFF4514	0.76	-0.4
4,510,615	-		GFF4514	0.76	+0.8
4,510,620	+		GFF4514	0.76	+1.1
4,510,623	-		GFF4514	0.76	-1.2
4,510,623	-		GFF4514	0.76	-0.8
4,510,623	-		GFF4514	0.76	+0.1
4,510,648	+		GFF4514	0.78	+0.0
4,510,658	+		GFF4514	0.78	-0.4
4,510,658	+		GFF4514	0.78	+0.6
4,510,658	+		GFF4514	0.78	-0.7
4,510,658	+		GFF4514	0.78	+0.6
4,510,658	+		GFF4514	0.78	-0.2
4,510,658	+		GFF4514	0.78	-0.0
4,510,658	+		GFF4514	0.78	-0.6
4,510,658	+		GFF4514	0.78	-1.4
4,510,658	+		GFF4514	0.78	-1.7
4,510,658	+		GFF4514	0.78	+0.1
4,510,658	+		GFF4514	0.78	-0.1
4,510,658	+		GFF4514	0.78	+0.5
4,510,658	+		GFF4514	0.78	+0.2
4,510,658	+		GFF4514	0.78	-0.2
4,510,658	+		GFF4514	0.78	-0.6
4,510,658	+		GFF4514	0.78	+1.2
4,510,661	-		GFF4514	0.78	-1.4
4,510,663	+		GFF4514	0.78	-2.0
4,510,663	+		GFF4514	0.78	+0.2
4,510,666	-		GFF4514	0.79	-0.7
4,510,666	-		GFF4514	0.79	-0.7
4,510,666	-		GFF4514	0.79	+0.0
4,510,666	-		GFF4514	0.79	-0.2
4,510,666	-		GFF4514	0.79	+0.2
4,510,666	-		GFF4514	0.79	+1.1
4,510,666	-		GFF4514	0.79	+0.2
4,510,666	-		GFF4514	0.79	-2.2
4,510,666	-		GFF4514	0.79	-2.4
4,510,666	-		GFF4514	0.79	+0.6
4,510,692	-		GFF4514	0.80	-0.6
4,510,692	-		GFF4514	0.80	+1.0
4,510,714	+		GFF4514	0.81	+1.0
4,510,714	+		GFF4514	0.81	+0.4
4,510,717	-		GFF4514	0.81	+0.9
4,510,731	+		GFF4514	0.82	+0.6
4,510,739	-		GFF4514	0.82	-1.3
4,510,739	-		GFF4514	0.82	-1.8
4,510,744	+		GFF4514	0.83	+0.6
4,510,752	-		GFF4514	0.83	+0.6
4,510,752	-		GFF4514	0.83	+0.7
4,510,752	-		GFF4514	0.83	+0.6
4,510,755	+		GFF4514	0.83	-0.2
4,510,763	-		GFF4514	0.84	+0.7
4,510,791	+		GFF4514	0.85	-0.7
4,510,791	+		GFF4514	0.85	+0.2
4,510,791	+		GFF4514	0.85	-0.4
4,510,791	+		GFF4514	0.85	-0.7
4,510,791	+		GFF4514	0.85	-1.7
4,510,796	+		GFF4514	0.85	-0.4
4,510,796	+		GFF4514	0.85	-0.0
4,510,799	-		GFF4514	0.86	+1.2
4,510,799	-		GFF4514	0.86	+0.7
4,510,799	-		GFF4514	0.86	-0.9
4,510,799	-		GFF4514	0.86	-0.5
4,510,799	-		GFF4514	0.86	-0.7
4,510,799	-		GFF4514	0.86	-0.0
4,510,799	-		GFF4514	0.86	+0.5
4,510,799	-		GFF4514	0.86	+1.1
4,510,804	-		GFF4514	0.86	-1.1
4,510,804	-		GFF4514	0.86	+0.3
4,510,804	-		GFF4514	0.86	-0.3
4,510,804	-		GFF4514	0.86	-2.0
4,510,815	+		GFF4514	0.86	-1.7
4,510,832	-		GFF4514	0.87	+0.8
4,510,834	+		GFF4514	0.87	+0.5
4,510,842	+		GFF4514	0.88	+0.4
4,510,850	+		GFF4514	0.88	-0.9
4,510,859	+		GFF4514	0.89	-0.2
4,510,867	+		GFF4514	0.89	-0.3
4,510,875	-		GFF4514	0.90	-0.5
4,510,882	-		GFF4514	0.90	-2.3
4,510,894	+				-1.5
4,510,894	+				+1.6
4,510,902	-				-1.0
4,510,902	-				-0.3
4,510,902	-				+0.9
4,510,902	-				-1.8
4,510,902	-				-0.9
4,510,905	+				-1.0
4,510,905	+				-0.6
4,510,905	+				+0.8
4,510,905	+				+0.5
4,510,905	+				-0.2
4,510,905	+				-0.6
4,510,909	+				-1.0
4,510,912	+				+0.2
4,510,913	+				-0.9
4,510,913	-				+0.6
4,510,913	-				-2.4
4,510,913	-				-0.6
4,510,913	-				-0.4
4,510,914	+				+1.6
4,510,914	+				-0.7
4,510,919	+				-1.1
4,510,919	+				-0.8
4,510,919	+				-0.8
4,510,922	-				-2.0
4,510,922	-				-0.4
4,510,922	-				+0.5
4,510,924	+				+0.0
4,510,924	+				-1.7
4,510,924	+				-0.5
4,510,927	-				+0.1
4,510,927	-				-1.5
4,510,932	-				-0.7
4,510,932	-				+0.2
4,510,932	-				+0.4
4,510,934	+				+0.0
4,510,934	+				+0.1
4,510,953	+				+0.5
4,510,953	+				-1.8
4,510,953	+				+0.5
4,510,955	+				-1.0
4,510,961	-				+0.6
4,510,961	-				+0.0
4,510,961	-				+0.8
4,510,961	-				+1.3
4,510,961	-				-1.4
4,510,970	+				-0.3
4,510,971	-				-0.8
4,510,971	-				-0.4
4,510,983	+				+0.0
4,510,983	+				+0.5
4,510,983	+				-1.6
4,510,991	-				-0.4
4,510,993	+				+1.7
4,510,998	+				+0.2
4,511,001	-				-0.8
4,511,006	+				-1.0
4,511,006	+				-1.1
4,511,006	+				+0.0
4,511,006	+				-0.2
4,511,006	-				-0.0
4,511,009	-				-1.5
4,511,014	-				-0.1
4,511,028	-				+0.7
4,511,030	-				+0.5
4,511,045	+				+1.5
4,511,114	+				-0.8
4,511,114	+				+1.8
4,511,114	+				-2.0
4,511,114	+				+0.6
4,511,114	+				+1.6
4,511,114	+				+0.8
4,511,114	+				+0.6
4,511,122	-				-0.6
4,511,122	-				+0.2
4,511,122	-				-1.2
4,511,122	-				-0.9
4,511,122	-				-0.5
4,511,122	-				-0.8
4,511,122	-				-0.1
4,511,170	-				-0.3
4,511,177	-				-1.5
4,511,203	-				+0.4
4,511,223	+				+0.5
4,511,223	+				+0.3
4,511,223	+				-0.2
4,511,223	+				-0.3
4,511,223	+				-0.7
4,511,223	+				-1.3
4,511,231	-				+0.6
4,511,231	-				-0.4
4,511,231	-				-0.0
4,511,231	-				-0.4
4,511,231	-				-0.1
4,511,231	-				-0.0
4,511,231	-				+0.1
4,511,231	-				-0.4
4,511,231	-				-1.2
4,511,231	-				-0.6
4,511,231	-				+0.5
4,511,231	-				-0.9
4,511,256	+				+0.4
4,511,257	-				-1.0
4,511,265	+				+0.1
4,511,265	+				-1.7
4,511,265	+				-0.2
4,511,265	+				-0.8
4,511,273	-				-1.2
4,511,273	-				-0.8
4,511,273	-				-0.8
4,511,285	-				+0.1
4,511,287	-				-1.3
4,511,301	+		GFF4515	0.10	+1.5
4,511,301	+		GFF4515	0.10	-0.2
4,511,301	+		GFF4515	0.10	+0.7
4,511,301	+		GFF4515	0.10	-0.0
4,511,301	+		GFF4515	0.10	-1.2
4,511,309	-		GFF4515	0.15	+1.1
4,511,309	-		GFF4515	0.15	-0.2
4,511,316	-		GFF4515	0.18	+0.4
4,511,342	-		GFF4515	0.32	-0.6
4,511,342	-		GFF4515	0.32	-0.6
4,511,349	+		GFF4515	0.35	-1.1
4,511,356	+		GFF4515	0.39	+0.5
4,511,356	+		GFF4515	0.39	+0.5
4,511,364	-		GFF4515	0.43	+0.9
4,511,364	-		GFF4515	0.43	-0.2
4,511,380	+		GFF4515	0.52	-0.4
4,511,401	+		GFF4515	0.62	+0.6
4,511,401	+		GFF4515	0.62	+0.1
4,511,401	+		GFF4515	0.62	-0.8
4,511,408	-		GFF4515	0.66	+0.4
4,511,409	-		GFF4515	0.67	+0.0
4,511,421	+		GFF4515	0.73	-0.7
4,511,421	+		GFF4515	0.73	+0.0
4,511,421	+		GFF4515	0.73	+0.1
4,511,421	+		GFF4515	0.73	-1.7
4,511,421	+		GFF4515	0.73	-1.0
4,511,429	-		GFF4515	0.77	-1.2
4,511,429	-		GFF4515	0.77	-1.0
4,511,429	-		GFF4515	0.77	-0.3
4,511,429	-		GFF4515	0.77	-1.4
4,511,429	-		GFF4515	0.77	-1.4
4,511,429	-		GFF4515	0.77	-0.5
4,511,429	-		GFF4515	0.77	-2.2
4,511,429	-		GFF4515	0.77	-0.6
4,511,429	-		GFF4515	0.77	+1.0
4,511,429	-		GFF4515	0.77	-2.2
4,511,429	-		GFF4515	0.77	-1.3
4,511,429	-		GFF4515	0.77	-0.2
4,511,454	-				-2.2
4,511,454	-				-0.5
4,511,475	-				+1.2
4,511,500	+				-0.0
4,511,517	+				+0.9
4,511,570	-				+0.1
4,511,570	-				-0.9
4,511,572	+				+0.2
4,511,572	+				+0.1
4,511,572	+				-0.0
4,511,572	+				-0.5
4,511,572	+				+0.6
4,511,572	+				+0.4
4,511,572	+				+0.1
4,511,580	-				+0.2
4,511,580	-				-0.9
4,511,590	-				+0.6
4,511,596	+				-0.0
4,511,608	-				-0.9
4,511,626	+				-1.7
4,511,647	-				+0.2
4,511,647	-				-0.4
4,511,653	-				-2.5
4,511,669	+				-1.6
4,511,672	-				+0.7
4,511,688	+				-0.8
4,511,688	+				+0.8
4,511,696	-		GFF4516	0.10	-0.1
4,511,696	-		GFF4516	0.10	-2.1
4,511,696	-		GFF4516	0.10	+0.2
4,511,698	+		GFF4516	0.11	+0.8
4,511,698	+		GFF4516	0.11	-0.2
4,511,698	+		GFF4516	0.11	-0.6
4,511,706	-		GFF4516	0.11	-0.6
4,511,706	-		GFF4516	0.11	-0.6
4,511,708	+		GFF4516	0.12	-0.2
4,511,708	+		GFF4516	0.12	-1.4
4,511,716	+		GFF4516	0.12	+0.5
4,511,716	-		GFF4516	0.12	-3.2
4,511,716	-		GFF4516	0.12	+1.4
4,511,716	-		GFF4516	0.12	-1.7
4,511,716	-		GFF4516	0.12	-0.3
4,511,716	-		GFF4516	0.12	-0.8
4,511,718	+		GFF4516	0.13	+0.8
4,511,726	-		GFF4516	0.13	+0.4
4,511,726	-		GFF4516	0.13	-0.5
4,511,749	+		GFF4516	0.16	-0.4
4,511,749	+		GFF4516	0.16	+0.9
4,511,757	-		GFF4516	0.17	+1.3
4,511,762	-		GFF4516	0.17	-1.4
4,511,767	+		GFF4516	0.18	-1.2
4,511,768	+		GFF4516	0.18	-1.8
4,511,768	+		GFF4516	0.18	+0.7
4,511,768	+		GFF4516	0.18	+0.2
4,511,768	+		GFF4516	0.18	-0.6
4,511,768	+		GFF4516	0.18	+2.1
4,511,768	+		GFF4516	0.18	+0.0
4,511,774	-		GFF4516	0.18	+1.1
4,511,774	-		GFF4516	0.18	+0.7
4,511,775	-		GFF4516	0.18	-0.7
4,511,775	-		GFF4516	0.18	-1.1
4,511,775	-		GFF4516	0.18	+0.1
4,511,775	-		GFF4516	0.18	-0.2
4,511,793	+		GFF4516	0.20	+0.5
4,511,793	+		GFF4516	0.20	-1.6
4,511,793	+		GFF4516	0.20	-0.2
4,511,801	-		GFF4516	0.21	+0.2
4,511,842	+		GFF4516	0.25	-0.4
4,511,842	+		GFF4516	0.25	-0.5
4,511,844	-		GFF4516	0.25	+0.6
4,511,845	+		GFF4516	0.25	-1.1
4,511,853	-		GFF4516	0.26	+0.5
4,511,855	+		GFF4516	0.26	-0.2
4,511,875	+		GFF4516	0.28	-0.6
4,511,886	+		GFF4516	0.29	-0.4
4,511,887	-		GFF4516	0.30	+0.6
4,511,898	+		GFF4516	0.31	-1.4
4,511,902	+		GFF4516	0.31	+1.8
4,511,902	+		GFF4516	0.31	-1.6
4,511,902	+		GFF4516	0.31	-2.4
4,511,910	-		GFF4516	0.32	+0.4
4,511,910	-		GFF4516	0.32	-1.2
4,511,912	+		GFF4516	0.32	-2.3
4,511,912	+		GFF4516	0.32	+0.3
4,511,912	+		GFF4516	0.32	+1.2
4,511,912	+		GFF4516	0.32	+0.8
4,511,912	+		GFF4516	0.32	-0.0
4,511,912	+		GFF4516	0.32	-1.4
4,511,912	+		GFF4516	0.32	+0.2
4,511,917	+		GFF4516	0.33	+0.2
4,511,917	+		GFF4516	0.33	+0.1
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4,511,920	-		GFF4516	0.33	+0.1
4,511,920	-		GFF4516	0.33	-0.1
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4,511,920	-		GFF4516	0.33	+0.4
4,511,925	+		GFF4516	0.33	-0.1
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4,511,933	-		GFF4516	0.34	-1.7
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4,511,963	+		GFF4516	0.37	-0.5
4,511,993	+		GFF4516	0.40	-0.4
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4,512,012	+		GFF4516	0.42	+1.6
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4,512,012	+		GFF4516	0.42	-0.7
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4,512,020	-		GFF4516	0.43	-2.0
4,512,020	-		GFF4516	0.43	-0.1
4,512,020	-		GFF4516	0.43	-0.5
4,512,030	+		GFF4516	0.44	-1.7
4,512,030	+		GFF4516	0.44	-0.3
4,512,030	+		GFF4516	0.44	-1.5
4,512,030	+		GFF4516	0.44	-0.1
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4,512,038	-		GFF4516	0.45	-1.4
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4,512,038	-		GFF4516	0.45	-1.5
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4,512,071	-		GFF4516	0.48	-3.3
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4,512,085	+		GFF4516	0.49	-0.3
4,512,086	-		GFF4516	0.49	+1.1
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4,512,180	+		GFF4516	0.59	+1.0
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4,512,180	+		GFF4516	0.59	+0.5
4,512,180	+		GFF4516	0.59	+1.2
4,512,180	+		GFF4516	0.59	-1.4
4,512,180	+		GFF4516	0.59	-0.9
4,512,180	+		GFF4516	0.59	-1.6
4,512,180	+		GFF4516	0.59	-1.5
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4,512,183	-		GFF4516	0.59	-1.4
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4,512,188	-		GFF4516	0.60	+0.0
4,512,188	-		GFF4516	0.60	+0.1
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4,512,198	-		GFF4516	0.61	-1.2
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4,512,209	+		GFF4516	0.62	-0.8
4,512,209	+		GFF4516	0.62	+0.7
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4,512,217	-		GFF4516	0.62	-1.3
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4,512,294	-		GFF4516	0.70	-2.2
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4,512,296	+		GFF4516	0.70	-1.8
4,512,296	+		GFF4516	0.70	-2.0
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4,512,296	+		GFF4516	0.70	+0.7
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4,512,304	-		GFF4516	0.71	+0.3
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4,512,383	-		GFF4516	0.79	+0.1
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4,512,394	+		GFF4516	0.80	-1.2
4,512,394	+		GFF4516	0.80	+0.2
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4,512,402	-		GFF4516	0.81	-1.4
4,512,402	-		GFF4516	0.81	+0.1
4,512,402	-		GFF4516	0.81	-1.7
4,512,423	+		GFF4516	0.83	+0.6
4,512,431	+		GFF4516	0.84	+1.0
4,512,431	-		GFF4516	0.84	+1.3
4,512,450	+		GFF4516	0.86	-1.7
4,512,455	+		GFF4516	0.86	-0.7