Strain Fitness in Sphingobium sp. HT1-2 around GFF4509

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,500,549	-		GFF4506	0.21	+0.6
4,500,564	-		GFF4506	0.27	-0.3
4,500,564	-		GFF4506	0.27	-2.4
4,500,564	-		GFF4506	0.27	+1.2
4,500,564	-		GFF4506	0.27	-1.3
4,500,574	+		GFF4506	0.30	-0.6
4,500,574	+		GFF4506	0.30	-1.2
4,500,586	-		GFF4506	0.34	+0.3
4,500,590	-		GFF4506	0.36	-0.4
4,500,613	-		GFF4506	0.44	-0.0
4,500,639	-		GFF4506	0.53	+1.0
4,500,654	+		GFF4506	0.59	-0.0
4,500,661	+		GFF4506	0.61	-1.9
4,500,661	+		GFF4506	0.61	+0.3
4,500,661	+		GFF4506	0.61	+0.2
4,500,661	+		GFF4506	0.61	+1.0
4,500,669	-		GFF4506	0.64	-0.2
4,500,669	-		GFF4506	0.64	-1.0
4,500,669	-		GFF4506	0.64	-0.1
4,500,669	-		GFF4506	0.64	-0.0
4,500,669	-		GFF4506	0.64	+0.6
4,500,673	+		GFF4506	0.66	+1.2
4,500,681	-		GFF4506	0.68	+0.5
4,500,718	+		GFF4506	0.82	-0.9
4,500,723	+		GFF4506	0.84	-1.6
4,500,726	+		GFF4506	0.85	+0.2
4,500,726	+		GFF4506	0.85	-1.6
4,500,731	-		GFF4506	0.86	-0.2
4,500,731	-		GFF4506	0.86	-1.5
4,500,739	-		GFF4506	0.89	+0.1
4,500,767	+				+0.7
4,500,769	+				-0.3
4,500,769	+				+0.8
4,500,769	+				+0.1
4,500,775	+				+0.5
4,500,775	-				+1.1
4,500,777	-				-0.3
4,500,777	-				+0.3
4,500,777	-				-1.0
4,500,782	-				+0.2
4,500,782	-				+1.2
4,500,788	-				-0.5
4,500,810	+				-0.8
4,500,810	+				-0.5
4,500,810	+				-0.6
4,500,810	+				+0.2
4,500,810	+				-0.9
4,500,810	+				-2.3
4,500,817	+				+0.2
4,500,817	-				-0.2
4,500,818	-				+0.0
4,500,818	-				-0.3
4,500,818	-				-0.2
4,500,818	-				-1.5
4,500,818	-				+0.4
4,500,825	-				-0.2
4,500,825	-				+0.9
4,500,832	+				-0.6
4,500,835	-				+0.8
4,500,841	-				+1.2
4,500,852	-				-0.1
4,500,858	+				-0.9
4,500,858	+				+0.4
4,500,858	+				+0.7
4,500,858	+				-1.1
4,500,858	+				+0.6
4,500,866	-				+0.4
4,500,866	-				-0.7
4,500,866	-				+0.2
4,500,866	-				-1.0
4,500,867	-				-2.2
4,500,867	-				+0.1
4,500,871	-				-0.3
4,500,880	+				-0.6
4,500,880	+				+0.0
4,500,881	+				-0.6
4,500,881	+				+1.2
4,500,881	+				+0.9
4,500,881	+				-0.4
4,500,888	-				+1.6
4,500,888	-				+0.3
4,500,889	-				+1.1
4,500,889	-				+0.1
4,500,889	-				-0.0
4,500,889	-				+0.1
4,500,889	-				-1.6
4,500,931	+				-0.8
4,500,971	+				-2.2
4,500,973	-				+0.3
4,500,981	+				-0.4
4,500,989	-				+1.2
4,501,019	-				-0.5
4,501,019	-				-0.4
4,501,019	-				-2.2
4,501,024	-				+1.5
4,501,028	+				-0.4
4,501,036	-				-2.1
4,501,040	-		GFF4507	0.12	-0.6
4,501,062	-		GFF4507	0.22	+1.0
4,501,062	-		GFF4507	0.22	-1.2
4,501,069	-		GFF4507	0.25	-2.2
4,501,104	+		GFF4507	0.41	+0.4
4,501,122	+		GFF4507	0.49	+0.2
4,501,161	-		GFF4507	0.66	-0.6
4,501,195	-		GFF4507	0.82	-0.5
4,501,222	+				-0.7
4,501,230	+				-2.8
4,501,238	-				-0.7
4,501,240	+				-1.3
4,501,240	+				-0.6
4,501,240	+				-1.0
4,501,252	-				+0.0
4,501,254	+				+0.9
4,501,254	+				-1.7
4,501,254	+				+0.4
4,501,254	+				+0.8
4,501,262	+				-0.3
4,501,262	+				-0.1
4,501,262	-				-0.6
4,501,262	-				-0.4
4,501,262	-				-0.3
4,501,262	-				-0.3
4,501,262	-				-1.5
4,501,270	-				-2.0
4,501,270	-				+0.6
4,501,272	+				-0.7
4,501,272	+				-1.1
4,501,275	-				+1.6
4,501,275	-				-0.6
4,501,280	-				-0.8
4,501,286	-				+1.0
4,501,314	-		GFF4508	0.26	-0.5
4,501,314	-		GFF4508	0.26	+0.8
4,501,333	+		GFF4508	0.38	-1.8
4,501,378	-		GFF4508	0.67	+1.0
4,501,407	+		GFF4508	0.85	+0.1
4,501,408	-		GFF4508	0.86	+0.1
4,501,412	+		GFF4508	0.88	-0.2
4,501,428	+				+0.7
4,501,444	+				-0.1
4,501,444	+				-0.6
4,501,449	+				+0.2
4,501,452	-				+0.4
4,501,488	-				+1.0
4,501,517	+				+0.2
4,501,525	-				-0.7
4,501,525	-				+0.1
4,501,525	-				-0.0
4,501,538	+				+0.3
4,501,546	-				+0.6
4,501,561	+				-0.2
4,501,600	+				+0.8
4,501,601	+				+0.6
4,501,608	+				-1.5
4,501,616	+				-1.4
4,501,616	+				+0.5
4,501,616	+				+0.2
4,501,616	+				-2.2
4,501,621	+				-0.0
4,501,621	+				+1.3
4,501,621	+				-0.9
4,501,621	+				+0.2
4,501,624	-				-2.4
4,501,624	-				+0.3
4,501,624	-				-1.9
4,501,624	-				+0.2
4,501,624	-				-0.3
4,501,624	-				-0.5
4,501,624	-				-0.3
4,501,626	+				+1.0
4,501,626	+				-0.5
4,501,629	-				+0.0
4,501,629	-				-0.2
4,501,629	-				+0.2
4,501,634	-				-1.2
4,501,634	-				-1.1
4,501,634	-				-1.8
4,501,634	-				-0.1
4,501,634	-				-0.7
4,501,660	+				-0.7
4,501,685	-		GFF4509	0.10	+0.2
4,501,755	+		GFF4509	0.15	-0.8
4,501,769	-		GFF4509	0.16	+0.5
4,501,770	-		GFF4509	0.16	-0.4
4,501,775	+		GFF4509	0.17	-2.2
4,501,775	+		GFF4509	0.17	-0.2
4,501,775	+		GFF4509	0.17	-1.2
4,501,783	-		GFF4509	0.17	+0.1
4,501,783	-		GFF4509	0.17	-0.3
4,501,799	-		GFF4509	0.18	+1.2
4,501,799	-		GFF4509	0.18	-0.3
4,501,802	+		GFF4509	0.19	-0.8
4,501,802	+		GFF4509	0.19	-2.0
4,501,810	-		GFF4509	0.19	-0.2
4,501,810	-		GFF4509	0.19	-0.3
4,501,810	-		GFF4509	0.19	+1.0
4,501,810	-		GFF4509	0.19	+0.2
4,501,810	-		GFF4509	0.19	-1.4
4,501,810	-		GFF4509	0.19	+0.2
4,501,810	-		GFF4509	0.19	+0.4
4,501,810	-		GFF4509	0.19	-0.7
4,501,810	-		GFF4509	0.19	+0.1
4,501,819	+		GFF4509	0.20	-0.5
4,501,827	-		GFF4509	0.20	+0.1
4,501,829	+		GFF4509	0.20	+0.5
4,501,829	+		GFF4509	0.20	+0.1
4,501,829	+		GFF4509	0.20	-0.1
4,501,832	-		GFF4509	0.21	-0.3
4,501,837	-		GFF4509	0.21	-0.3
4,501,837	-		GFF4509	0.21	-1.7
4,501,837	-		GFF4509	0.21	-0.8
4,501,837	-		GFF4509	0.21	-1.2
4,501,837	-		GFF4509	0.21	+0.1
4,501,837	-		GFF4509	0.21	+0.2
4,501,843	+		GFF4509	0.21	+0.3
4,501,844	+		GFF4509	0.21	+0.0
4,501,844	+		GFF4509	0.21	-0.0
4,501,852	-		GFF4509	0.22	+1.1
4,501,868	+		GFF4509	0.23	-0.6
4,501,875	+		GFF4509	0.24	-0.4
4,501,891	+		GFF4509	0.25	-1.2
4,501,895	+		GFF4509	0.25	+0.7
4,501,899	+		GFF4509	0.25	-0.9
4,501,903	-		GFF4509	0.26	-0.3
4,501,912	+		GFF4509	0.26	-0.2
4,501,912	+		GFF4509	0.26	-1.1
4,501,912	+		GFF4509	0.26	-1.2
4,501,912	+		GFF4509	0.26	-1.6
4,501,912	+		GFF4509	0.26	-0.5
4,501,920	-		GFF4509	0.27	+0.4
4,501,920	-		GFF4509	0.27	-0.4
4,501,920	-		GFF4509	0.27	+1.0
4,501,920	-		GFF4509	0.27	-0.9
4,501,920	-		GFF4509	0.27	-0.5
4,501,920	-		GFF4509	0.27	+0.5
4,501,953	+		GFF4509	0.29	+0.5
4,501,978	-		GFF4509	0.31	+0.8
4,502,021	+		GFF4509	0.34	+0.9
4,502,029	-		GFF4509	0.35	+1.3
4,502,036	+		GFF4509	0.35	+0.4
4,502,036	+		GFF4509	0.35	-0.1
4,502,036	+		GFF4509	0.35	-0.4
4,502,036	-		GFF4509	0.35	-0.1
4,502,042	+		GFF4509	0.35	+0.3
4,502,042	+		GFF4509	0.35	-0.9
4,502,042	+		GFF4509	0.35	-0.1
4,502,042	+		GFF4509	0.35	-0.9
4,502,042	+		GFF4509	0.35	+0.3
4,502,042	+		GFF4509	0.35	-0.0
4,502,042	+		GFF4509	0.35	+0.4
4,502,044	-		GFF4509	0.36	-0.4
4,502,044	-		GFF4509	0.36	-1.4
4,502,044	-		GFF4509	0.36	-0.8
4,502,044	-		GFF4509	0.36	+0.4
4,502,050	-		GFF4509	0.36	-0.7
4,502,076	+		GFF4509	0.38	+0.1
4,502,081	+		GFF4509	0.38	-1.0
4,502,089	-		GFF4509	0.39	-1.2
4,502,089	-		GFF4509	0.39	+0.6
4,502,089	-		GFF4509	0.39	+0.2
4,502,089	-		GFF4509	0.39	+0.4
4,502,089	-		GFF4509	0.39	+0.4
4,502,121	+		GFF4509	0.41	-1.5
4,502,121	+		GFF4509	0.41	+0.3
4,502,121	+		GFF4509	0.41	-0.4
4,502,127	+		GFF4509	0.41	-0.1
4,502,135	+		GFF4509	0.42	-0.9
4,502,135	+		GFF4509	0.42	+1.0
4,502,135	-		GFF4509	0.42	-1.7
4,502,147	+		GFF4509	0.43	-0.3
4,502,147	+		GFF4509	0.43	-0.1
4,502,147	+		GFF4509	0.43	-0.8
4,502,147	+		GFF4509	0.43	-0.2
4,502,147	+		GFF4509	0.43	-2.9
4,502,147	+		GFF4509	0.43	+0.3
4,502,147	+		GFF4509	0.43	+0.7
4,502,147	+		GFF4509	0.43	-1.6
4,502,147	+		GFF4509	0.43	-0.6
4,502,147	+		GFF4509	0.43	+1.0
4,502,147	+		GFF4509	0.43	+0.2
4,502,147	+		GFF4509	0.43	+0.5
4,502,147	+		GFF4509	0.43	-1.0
4,502,147	+		GFF4509	0.43	-0.7
4,502,147	+		GFF4509	0.43	-1.8
4,502,147	+		GFF4509	0.43	-1.0
4,502,151	-		GFF4509	0.43	+0.5
4,502,152	+		GFF4509	0.43	-0.4
4,502,155	-		GFF4509	0.43	-2.9
4,502,155	-		GFF4509	0.43	-0.1
4,502,155	-		GFF4509	0.43	+1.0
4,502,155	-		GFF4509	0.43	-1.6
4,502,155	-		GFF4509	0.43	+1.2
4,502,155	-		GFF4509	0.43	-0.8
4,502,155	-		GFF4509	0.43	-0.3
4,502,155	-		GFF4509	0.43	+0.7
4,502,155	-		GFF4509	0.43	-1.8
4,502,155	-		GFF4509	0.43	-1.2
4,502,155	-		GFF4509	0.43	-0.1
4,502,155	-		GFF4509	0.43	+1.1
4,502,155	-		GFF4509	0.43	+0.6
4,502,155	-		GFF4509	0.43	-0.3
4,502,155	-		GFF4509	0.43	+0.6
4,502,164	+		GFF4509	0.44	+0.3
4,502,178	+		GFF4509	0.45	-1.7
4,502,184	-		GFF4509	0.45	-0.9
4,502,197	-		GFF4509	0.46	+0.7
4,502,211	+		GFF4509	0.47	+0.9
4,502,211	+		GFF4509	0.47	-0.4
4,502,212	-		GFF4509	0.47	-0.2
4,502,219	-		GFF4509	0.48	-1.8
4,502,248	+		GFF4509	0.50	-0.7
4,502,266	-		GFF4509	0.51	+1.8
4,502,281	+		GFF4509	0.52	+0.1
4,502,306	+		GFF4509	0.54	-0.6
4,502,316	+		GFF4509	0.55	-0.7
4,502,316	+		GFF4509	0.55	-1.0
4,502,316	+		GFF4509	0.55	+1.1
4,502,323	-		GFF4509	0.55	-2.4
4,502,325	+		GFF4509	0.55	-0.1
4,502,325	+		GFF4509	0.55	+0.5
4,502,325	+		GFF4509	0.55	+0.6
4,502,325	+		GFF4509	0.55	-0.2
4,502,327	+		GFF4509	0.56	+0.1
4,502,333	-		GFF4509	0.56	+0.3
4,502,333	-		GFF4509	0.56	+0.7
4,502,333	-		GFF4509	0.56	-1.2
4,502,333	-		GFF4509	0.56	+1.4
4,502,333	-		GFF4509	0.56	+0.2
4,502,333	-		GFF4509	0.56	+0.1
4,502,333	-		GFF4509	0.56	+1.6
4,502,371	-		GFF4509	0.59	-1.1
4,502,393	-		GFF4509	0.60	-1.1
4,502,398	-		GFF4509	0.61	+0.4
4,502,408	-		GFF4509	0.61	+0.8
4,502,408	-		GFF4509	0.61	-0.7
4,502,408	-		GFF4509	0.61	+0.3
4,502,433	-		GFF4509	0.63	-0.8
4,502,451	+		GFF4509	0.64	-0.2
4,502,451	+		GFF4509	0.64	-0.0
4,502,459	-		GFF4509	0.65	-2.6
4,502,464	-		GFF4509	0.65	+0.2
4,502,467	+		GFF4509	0.65	+1.0
4,502,467	+		GFF4509	0.65	+0.4
4,502,467	+		GFF4509	0.65	+1.2
4,502,469	+		GFF4509	0.66	+0.4
4,502,469	+		GFF4509	0.66	-1.1
4,502,469	+		GFF4509	0.66	+0.3
4,502,469	+		GFF4509	0.66	-0.1
4,502,469	+		GFF4509	0.66	+0.6
4,502,473	-		GFF4509	0.66	+0.9
4,502,475	-		GFF4509	0.66	-0.8
4,502,477	-		GFF4509	0.66	-0.7
4,502,477	-		GFF4509	0.66	+0.7
4,502,477	-		GFF4509	0.66	-2.1
4,502,477	-		GFF4509	0.66	+1.8
4,502,477	-		GFF4509	0.66	+0.6
4,502,484	+		GFF4509	0.67	+0.5
4,502,489	+		GFF4509	0.67	+1.1
4,502,489	+		GFF4509	0.67	-2.1
4,502,489	+		GFF4509	0.67	-0.5
4,502,489	+		GFF4509	0.67	-0.6
4,502,492	-		GFF4509	0.67	-0.7
4,502,494	+		GFF4509	0.67	+1.0
4,502,494	+		GFF4509	0.67	-1.4
4,502,497	-		GFF4509	0.68	-0.4
4,502,502	-		GFF4509	0.68	+0.2
4,502,502	-		GFF4509	0.68	+0.4
4,502,502	-		GFF4509	0.68	+1.0
4,502,502	-		GFF4509	0.68	-0.3
4,502,512	+		GFF4509	0.69	+0.3
4,502,543	+		GFF4509	0.71	-0.5
4,502,569	+		GFF4509	0.73	-0.3
4,502,569	+		GFF4509	0.73	+0.0
4,502,577	-		GFF4509	0.73	-0.9
4,502,577	-		GFF4509	0.73	-1.7
4,502,577	-		GFF4509	0.73	+0.5
4,502,587	+		GFF4509	0.74	-1.2
4,502,592	+		GFF4509	0.74	+0.4
4,502,592	+		GFF4509	0.74	-1.4
4,502,600	-		GFF4509	0.75	-0.0
4,502,608	-		GFF4509	0.75	+0.2
4,502,615	+		GFF4509	0.76	+0.6
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4,502,617	+		GFF4509	0.76	+1.3
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4,502,620	-		GFF4509	0.76	-0.6
4,502,625	+		GFF4509	0.77	-0.1
4,502,625	-		GFF4509	0.77	+0.2
4,502,633	+		GFF4509	0.77	-0.6
4,502,638	+		GFF4509	0.78	+0.5
4,502,639	+		GFF4509	0.78	-0.8
4,502,641	-		GFF4509	0.78	-0.9
4,502,649	+		GFF4509	0.78	+0.8
4,502,651	-		GFF4509	0.78	-0.2
4,502,651	-		GFF4509	0.78	+0.8
4,502,657	-		GFF4509	0.79	+0.5
4,502,657	-		GFF4509	0.79	-0.6
4,502,657	-		GFF4509	0.79	-0.4
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4,502,687	+		GFF4509	0.81	-1.1
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4,502,695	-		GFF4509	0.82	+1.2
4,502,695	-		GFF4509	0.82	-2.0
4,502,697	+		GFF4509	0.82	+0.8
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4,502,705	-		GFF4509	0.82	-2.6
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4,502,742	-		GFF4509	0.85	+0.1
4,502,763	+		GFF4509	0.86	-0.3
4,502,771	+		GFF4509	0.87	-1.1
4,502,771	-		GFF4509	0.87	-0.5
4,502,794	-		GFF4509	0.89	-1.4
4,502,794	-		GFF4509	0.89	-1.0
4,502,799	-		GFF4509	0.89	-0.6
4,502,823	-				+0.6
4,502,846	+				-0.5
4,502,851	+				+0.4
4,502,851	+				-0.7
4,502,853	+				-0.3
4,502,859	-				-2.2
4,502,859	-				-0.7
4,502,859	-				+0.1
4,502,859	-				-0.3
4,502,859	-				-0.3
4,502,859	-				+0.8
4,502,870	+				-1.5
4,502,873	+				-1.4
4,502,873	+				+1.0
4,502,874	+				+0.2
4,502,874	+				-1.4
4,502,881	-				+0.7
4,502,885	+				-0.5
4,502,920	-				+0.1
4,502,934	+				-1.9
4,502,943	+				-1.1
4,502,943	-				-0.7
4,502,956	+				-0.1
4,502,956	+				+0.5
4,502,956	+				+0.0
4,502,957	+				-0.1
4,502,964	-				-0.0
4,502,964	-				-0.2
4,502,988	-				-0.3
4,502,998	+				+0.8
4,503,035	-				+0.4
4,503,041	-				+0.1
4,503,058	+				+0.2
4,503,083	-				+0.3
4,503,088	+				-1.8
4,503,095	-				+0.2
4,503,096	-				-1.3
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4,503,127	-				-0.1
4,503,129	-				+0.9
4,503,129	-				+0.2
4,503,137	-				+0.3
4,503,137	-				-1.1
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4,503,148	-				-0.1
4,503,153	-				+1.3
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4,503,155	+				+0.6
4,503,155	+				+0.1
4,503,155	+				-0.4
4,503,155	+				-1.9
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4,503,163	-				+0.1
4,503,163	-				+0.1
4,503,163	-				+0.2
4,503,163	-				-0.1
4,503,163	-				+0.1
4,503,163	-				-1.6
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4,503,169	-		GFF4510	0.10	-0.4
4,503,169	-		GFF4510	0.10	-0.5
4,503,169	-		GFF4510	0.10	-1.4
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4,503,185	-		GFF4510	0.12	-0.1
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4,503,199	+		GFF4510	0.13	-3.3
4,503,199	+		GFF4510	0.13	-0.1
4,503,199	+		GFF4510	0.13	-1.8
4,503,199	+		GFF4510	0.13	-0.7
4,503,199	+		GFF4510	0.13	+0.0
4,503,199	+		GFF4510	0.13	+0.9
4,503,199	+		GFF4510	0.13	-0.6
4,503,199	+		GFF4510	0.13	+0.7
4,503,199	+		GFF4510	0.13	-2.2
4,503,199	+		GFF4510	0.13	-0.6
4,503,199	+		GFF4510	0.13	-0.2
4,503,199	+		GFF4510	0.13	+1.2
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4,503,207	-		GFF4510	0.14	+0.3
4,503,207	-		GFF4510	0.14	+0.7
4,503,207	-		GFF4510	0.14	-1.1
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4,503,207	-		GFF4510	0.14	+0.7
4,503,207	-		GFF4510	0.14	-0.6
4,503,207	-		GFF4510	0.14	-0.1
4,503,207	-		GFF4510	0.14	+0.8
4,503,207	-		GFF4510	0.14	+0.1
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4,503,207	-		GFF4510	0.14	+0.5
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4,503,207	-		GFF4510	0.14	+0.5
4,503,207	-		GFF4510	0.14	+0.1
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4,503,207	-		GFF4510	0.14	-0.8
4,503,207	-		GFF4510	0.14	-1.9
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4,503,207	-		GFF4510	0.14	+0.6
4,503,207	-		GFF4510	0.14	-1.0
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4,503,207	-		GFF4510	0.14	-1.3
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4,503,207	-		GFF4510	0.14	-0.1
4,503,207	-		GFF4510	0.14	-1.0
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4,503,219	+		GFF4510	0.15	-1.0
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4,503,483	+		GFF4510	0.38	+1.6
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4,503,558	-		GFF4510	0.44	-1.8
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4,503,653	+		GFF4510	0.53	-1.1
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4,503,692	+		GFF4510	0.56	+0.6
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4,503,700	-		GFF4510	0.57	+0.3
4,503,700	-		GFF4510	0.57	-2.3
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4,503,700	-		GFF4510	0.57	-1.6
4,503,700	-		GFF4510	0.57	-1.2
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