Strain Fitness in Sphingobium sp. HT1-2 around GFF4338

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,340,265	+		GFF4337	0.41	-1.4
4,340,269	+		GFF4337	0.42	-2.8
4,340,273	-		GFF4337	0.42	+0.5
4,340,273	-		GFF4337	0.42	+0.9
4,340,274	+		GFF4337	0.42	-0.1
4,340,276	-		GFF4337	0.42	+0.3
4,340,277	-		GFF4337	0.42	+1.0
4,340,288	+		GFF4337	0.43	-0.2
4,340,292	-		GFF4337	0.43	-1.6
4,340,294	+		GFF4337	0.43	+0.8
4,340,298	-		GFF4337	0.43	-0.6
4,340,313	+		GFF4337	0.44	+0.8
4,340,318	+		GFF4337	0.45	-0.8
4,340,321	+		GFF4337	0.45	+0.2
4,340,321	-		GFF4337	0.45	+0.5
4,340,335	+		GFF4337	0.46	-0.4
4,340,350	-		GFF4337	0.47	+0.4
4,340,350	-		GFF4337	0.47	-0.1
4,340,367	-		GFF4337	0.48	-3.0
4,340,376	+		GFF4337	0.48	+0.5
4,340,376	+		GFF4337	0.48	-0.3
4,340,378	+		GFF4337	0.48	+0.3
4,340,378	+		GFF4337	0.48	-0.3
4,340,378	+		GFF4337	0.48	-1.1
4,340,384	-		GFF4337	0.49	-2.0
4,340,386	-		GFF4337	0.49	+1.2
4,340,411	+		GFF4337	0.50	+0.0
4,340,425	-		GFF4337	0.51	-1.4
4,340,436	+		GFF4337	0.52	+0.4
4,340,444	-		GFF4337	0.52	-0.8
4,340,446	+		GFF4337	0.52	+0.8
4,340,459	-		GFF4337	0.53	+0.3
4,340,459	-		GFF4337	0.53	-0.7
4,340,468	+		GFF4337	0.54	-1.1
4,340,468	+		GFF4337	0.54	-1.4
4,340,468	+		GFF4337	0.54	+0.3
4,340,472	-		GFF4337	0.54	-2.3
4,340,476	-		GFF4337	0.54	+0.7
4,340,476	-		GFF4337	0.54	+0.2
4,340,476	-		GFF4337	0.54	+1.8
4,340,478	+		GFF4337	0.54	-0.6
4,340,486	+		GFF4337	0.55	-0.8
4,340,492	+		GFF4337	0.55	+0.1
4,340,498	-		GFF4337	0.55	+0.0
4,340,500	+		GFF4337	0.56	-0.3
4,340,511	+		GFF4337	0.56	+0.0
4,340,512	-		GFF4337	0.56	+0.9
4,340,525	-		GFF4337	0.57	-0.1
4,340,527	-		GFF4337	0.57	-1.6
4,340,529	+		GFF4337	0.57	+1.2
4,340,531	+		GFF4337	0.57	+1.2
4,340,531	+		GFF4337	0.57	-1.8
4,340,531	+		GFF4337	0.57	+0.2
4,340,531	+		GFF4337	0.57	-2.5
4,340,531	+		GFF4337	0.57	+0.1
4,340,539	-		GFF4337	0.58	+0.4
4,340,539	-		GFF4337	0.58	-0.1
4,340,558	+		GFF4337	0.59	+0.0
4,340,563	+		GFF4337	0.59	+0.4
4,340,580	+		GFF4337	0.60	+0.6
4,340,588	-		GFF4337	0.61	-0.4
4,340,588	-		GFF4337	0.61	+0.6
4,340,588	-		GFF4337	0.61	-0.5
4,340,593	+		GFF4337	0.61	-0.9
4,340,593	-		GFF4337	0.61	-1.0
4,340,598	+		GFF4337	0.61	-2.4
4,340,598	+		GFF4337	0.61	-0.8
4,340,598	+		GFF4337	0.61	-0.5
4,340,598	+		GFF4337	0.61	+0.4
4,340,601	-		GFF4337	0.62	-0.7
4,340,601	-		GFF4337	0.62	-0.9
4,340,606	-		GFF4337	0.62	+0.5
4,340,606	-		GFF4337	0.62	-0.1
4,340,606	-		GFF4337	0.62	+0.8
4,340,611	-		GFF4337	0.62	+0.4
4,340,611	-		GFF4337	0.62	-1.8
4,340,640	+		GFF4337	0.64	-1.8
4,340,648	-		GFF4337	0.64	-0.7
4,340,648	-		GFF4337	0.64	+0.2
4,340,648	-		GFF4337	0.64	-1.7
4,340,649	+		GFF4337	0.65	+0.9
4,340,650	+		GFF4337	0.65	+0.2
4,340,652	-		GFF4337	0.65	-0.9
4,340,662	+		GFF4337	0.65	-0.7
4,340,670	-		GFF4337	0.66	-1.9
4,340,670	-		GFF4337	0.66	-0.5
4,340,670	-		GFF4337	0.66	-0.0
4,340,691	-		GFF4337	0.67	-0.6
4,340,709	+		GFF4337	0.68	-0.1
4,340,742	-		GFF4337	0.70	+0.5
4,340,747	-		GFF4337	0.70	-1.1
4,340,754	+		GFF4337	0.71	-0.1
4,340,762	-		GFF4337	0.71	-0.6
4,340,762	-		GFF4337	0.71	-0.4
4,340,762	-		GFF4337	0.71	-1.6
4,340,762	-		GFF4337	0.71	+0.2
4,340,815	-		GFF4337	0.74	-0.0
4,340,815	-		GFF4337	0.74	-1.3
4,340,815	-		GFF4337	0.74	+0.0
4,340,817	+		GFF4337	0.75	+0.9
4,340,817	+		GFF4337	0.75	-0.5
4,340,817	+		GFF4337	0.75	+0.2
4,340,817	+		GFF4337	0.75	-1.0
4,340,817	+		GFF4337	0.75	+0.6
4,340,820	-		GFF4337	0.75	-1.1
4,340,825	-		GFF4337	0.75	-1.2
4,340,825	-		GFF4337	0.75	-0.3
4,340,825	-		GFF4337	0.75	+0.7
4,340,855	+		GFF4337	0.77	-0.8
4,340,861	+		GFF4337	0.77	-0.3
4,340,863	-		GFF4337	0.77	-1.0
4,340,874	+		GFF4337	0.78	+0.0
4,340,881	-		GFF4337	0.78	-0.8
4,340,883	-		GFF4337	0.79	-1.4
4,340,893	+		GFF4337	0.79	-0.4
4,340,893	+		GFF4337	0.79	-1.2
4,340,898	+		GFF4337	0.79	-0.2
4,340,899	+		GFF4337	0.80	+0.4
4,340,901	-		GFF4337	0.80	+0.1
4,340,909	+		GFF4337	0.80	+0.4
4,340,918	+		GFF4337	0.81	-0.8
4,340,923	+		GFF4337	0.81	-2.3
4,340,923	+		GFF4337	0.81	-0.5
4,340,923	+		GFF4337	0.81	-0.4
4,340,926	-		GFF4337	0.81	+0.6
4,340,955	+		GFF4337	0.83	-1.6
4,340,969	+		GFF4337	0.84	+0.5
4,340,979	+		GFF4337	0.84	-0.7
4,340,979	+		GFF4337	0.84	-0.6
4,340,979	+		GFF4337	0.84	-1.2
4,340,979	+		GFF4337	0.84	-0.2
4,340,979	+		GFF4337	0.84	-0.7
4,340,979	+		GFF4337	0.84	-2.1
4,340,979	+		GFF4337	0.84	-0.9
4,340,979	+		GFF4337	0.84	-0.9
4,340,979	+		GFF4337	0.84	+0.5
4,340,979	+		GFF4337	0.84	-1.0
4,340,979	+		GFF4337	0.84	+0.3
4,340,979	+		GFF4337	0.84	+1.1
4,340,979	+		GFF4337	0.84	-0.4
4,340,979	+		GFF4337	0.84	+0.5
4,340,979	+		GFF4337	0.84	-0.8
4,340,979	+		GFF4337	0.84	+1.2
4,340,979	+		GFF4337	0.84	+1.2
4,340,979	+		GFF4337	0.84	-1.7
4,340,979	+		GFF4337	0.84	+1.6
4,340,979	+		GFF4337	0.84	+1.0
4,340,979	+		GFF4337	0.84	-0.1
4,340,979	+		GFF4337	0.84	-0.3
4,340,979	+		GFF4337	0.84	+0.7
4,340,987	-		GFF4337	0.85	-0.7
4,340,987	-		GFF4337	0.85	+0.6
4,340,987	-		GFF4337	0.85	-2.1
4,340,987	-		GFF4337	0.85	-0.5
4,340,987	-		GFF4337	0.85	-0.5
4,340,987	-		GFF4337	0.85	-1.4
4,340,987	-		GFF4337	0.85	+0.4
4,340,987	-		GFF4337	0.85	+0.3
4,340,987	-		GFF4337	0.85	-1.8
4,340,987	-		GFF4337	0.85	+1.2
4,340,987	-		GFF4337	0.85	-2.1
4,340,987	-		GFF4337	0.85	-1.1
4,340,987	-		GFF4337	0.85	-1.1
4,340,987	-		GFF4337	0.85	-0.0
4,340,987	-		GFF4337	0.85	-0.4
4,340,987	-		GFF4337	0.85	+0.2
4,340,989	+		GFF4337	0.85	+0.3
4,340,992	-		GFF4337	0.85	+0.2
4,341,000	+		GFF4337	0.86	+0.9
4,341,003	-		GFF4337	0.86	-2.4
4,341,045	-		GFF4337	0.88	-0.0
4,341,064	-		GFF4337	0.89	+0.9
4,341,080	-				-0.0
4,341,080	-				-0.2
4,341,084	+				+0.6
4,341,084	+				-0.2
4,341,084	+				-2.4
4,341,092	-				-0.7
4,341,092	-				-0.2
4,341,092	-				+0.3
4,341,092	-				-2.0
4,341,092	-				-0.9
4,341,092	-				-0.9
4,341,092	-				-1.3
4,341,092	-				-0.8
4,341,092	-				+0.3
4,341,093	+				-1.4
4,341,110	+				-0.4
4,341,110	+				+0.6
4,341,110	+				-1.0
4,341,118	-				-0.9
4,341,118	-				+0.0
4,341,121	+				+0.5
4,341,124	-				+1.1
4,341,142	+				-0.5
4,341,165	-				+1.0
4,341,174	+				-1.1
4,341,174	+				-1.8
4,341,176	+				-0.4
4,341,176	+				+0.3
4,341,176	+				-0.4
4,341,176	+				-1.2
4,341,184	-				-0.4
4,341,184	-				+0.6
4,341,184	-				+1.2
4,341,184	-				+0.5
4,341,184	-				-0.0
4,341,197	-				-1.4
4,341,207	-				-0.3
4,341,209	+				-0.2
4,341,209	+				+0.2
4,341,209	+				+0.0
4,341,216	+				-0.1
4,341,216	+				-0.4
4,341,217	-				-0.5
4,341,223	+				-1.1
4,341,226	-				-1.9
4,341,229	-				+0.1
4,341,254	-				-0.5
4,341,260	+				-0.4
4,341,260	+				-0.6
4,341,260	+				+0.2
4,341,260	+				-0.4
4,341,260	+				+1.0
4,341,265	+				-2.0
4,341,268	-				-2.3
4,341,268	-				-0.6
4,341,268	-				+0.2
4,341,268	-				+0.6
4,341,268	-				-1.0
4,341,273	-				-0.8
4,341,273	-				+0.2
4,341,303	+		GFF4338	0.14	+0.1
4,341,311	-		GFF4338	0.16	-0.1
4,341,327	+		GFF4338	0.22	-1.9
4,341,358	-		GFF4338	0.32	-0.5
4,341,358	-		GFF4338	0.32	-1.3
4,341,358	-		GFF4338	0.32	-0.8
4,341,363	+		GFF4338	0.34	+1.1
4,341,379	+		GFF4338	0.39	-1.4
4,341,380	+		GFF4338	0.39	-0.1
4,341,380	+		GFF4338	0.39	+0.6
4,341,387	+		GFF4338	0.42	-0.1
4,341,387	+		GFF4338	0.42	-1.9
4,341,387	+		GFF4338	0.42	+1.2
4,341,395	+		GFF4338	0.44	-0.6
4,341,433	-		GFF4338	0.57	-0.4
4,341,455	+		GFF4338	0.64	+0.9
4,341,459	+		GFF4338	0.66	-0.9
4,341,467	-		GFF4338	0.68	+0.6
4,341,475	+		GFF4338	0.71	-1.4
4,341,494	+		GFF4338	0.77	-0.5
4,341,541	-				-0.8
4,341,555	+				-1.7
4,341,555	+				-0.2
4,341,563	-				-2.0
4,341,565	+				-0.1
4,341,565	+				-0.4
4,341,571	+				+0.4
4,341,571	+				-0.0
4,341,572	+				-0.2
4,341,573	-				+0.4
4,341,573	-				-0.8
4,341,573	-				-0.4
4,341,573	-				+0.8
4,341,573	-				-0.4
4,341,580	-				-0.0
4,341,615	+				-0.9
4,341,626	-				+0.3
4,341,641	+				-1.0
4,341,647	-				-1.7
4,341,647	-				-1.7
4,341,652	+				+0.5
4,341,652	-				-0.6
4,341,660	-				+0.0
4,341,660	-				-2.0
4,341,662	-				+0.6
4,341,677	+				-1.4
4,341,677	+				-0.1
4,341,685	-				-0.4
4,341,685	-				+0.3
4,341,685	-				+0.8
4,341,685	-				-2.3
4,341,685	-				-0.4
4,341,685	-				-0.3
4,341,688	-				+1.7
4,341,690	-				-0.4
4,341,695	+				+0.9
4,341,695	+				-2.8
4,341,695	+				+0.6
4,341,703	-				+0.2
4,341,703	-				-0.6
4,341,703	-				-0.1
4,341,726	+				+1.0
4,341,728	-				-1.9
4,341,734	-				-0.6
4,341,764	+				+0.2
4,341,771	+				+0.1
4,341,772	-				-0.4
4,341,779	-				-0.6
4,341,793	+				+0.3
4,341,793	+				-1.8
4,341,793	+				+0.4
4,341,793	+				-0.6
4,341,793	+				-0.1
4,341,801	-				-1.3
4,341,816	+				+0.0
4,341,824	-				+0.7
4,341,824	-				-0.4
4,341,839	-		GFF4339	0.14	-1.9
4,341,844	-		GFF4339	0.16	-0.6
4,341,861	+		GFF4339	0.26	-0.1
4,341,869	-		GFF4339	0.31	-0.6
4,341,871	+		GFF4339	0.32	-0.1
4,341,891	+		GFF4339	0.43	-0.4
4,341,952	+		GFF4339	0.77	+0.2
4,341,958	-		GFF4339	0.81	+0.4
4,341,993	-				-0.7
4,341,998	-				-1.3
4,342,008	-				-0.1
4,342,013	+				-0.5
4,342,013	-				-0.8
4,342,016	+				-1.3
4,342,026	+				+0.0
4,342,029	-				+0.6
4,342,034	-				-0.9
4,342,042	-				-2.1
4,342,104	-				-1.4
4,342,117	+				-0.6
4,342,117	-				-1.4
4,342,123	+				-1.1
4,342,126	-				-1.9
4,342,132	+				+0.9
4,342,132	+				+0.6
4,342,132	+				-0.6
4,342,132	+				-1.6
4,342,132	+				-0.2
4,342,140	-				-2.2
4,342,140	-				+1.4
4,342,140	-				-1.2
4,342,140	-				-1.9
4,342,150	+				-1.0
4,342,155	+				-0.2
4,342,155	+				+0.0
4,342,155	+				+0.2
4,342,158	-				-0.7
4,342,158	-				-2.7
4,342,163	-				-1.6
4,342,165	+				-0.1
4,342,165	+				+1.2
4,342,165	+				+1.0
4,342,165	+				-0.4
4,342,165	+				-0.6
4,342,165	+				-0.4
4,342,165	+				-0.2
4,342,165	+				-0.9
4,342,165	+				+0.3
4,342,165	+				-0.4
4,342,173	-				+0.7
4,342,173	-				+0.4
4,342,173	-				-0.3
4,342,173	-				-0.0
4,342,173	-				+0.6
4,342,173	-				+0.3
4,342,173	-				+0.5
4,342,180	+				-0.0
4,342,182	-				-0.8
4,342,193	+				-1.1
4,342,195	+				-1.2
4,342,199	+				+0.2
4,342,203	-				-0.6
4,342,209	-				+0.8
4,342,209	-				-1.2
4,342,222	+		GFF4340	0.11	+0.3
4,342,222	+		GFF4340	0.11	-0.8
4,342,230	-		GFF4340	0.11	-1.4
4,342,240	-		GFF4340	0.12	+0.4
4,342,304	+		GFF4340	0.17	-0.1
4,342,312	-		GFF4340	0.18	-0.5
4,342,312	-		GFF4340	0.18	-1.6
4,342,348	-		GFF4340	0.20	-0.5
4,342,356	+		GFF4340	0.21	-0.9
4,342,357	-		GFF4340	0.21	+0.0
4,342,364	-		GFF4340	0.21	-0.1
4,342,379	+		GFF4340	0.22	-0.9
4,342,392	+		GFF4340	0.23	+0.6
4,342,392	-		GFF4340	0.23	+0.0
4,342,394	+		GFF4340	0.24	-0.3
4,342,400	-		GFF4340	0.24	+0.1
4,342,400	-		GFF4340	0.24	+0.2
4,342,402	+		GFF4340	0.24	+0.6
4,342,402	-		GFF4340	0.24	-0.6
4,342,410	-		GFF4340	0.25	-0.7
4,342,416	+		GFF4340	0.25	+0.7
4,342,438	+		GFF4340	0.27	-1.3
4,342,446	-		GFF4340	0.27	-0.2
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