Strain Fitness in Sphingobium sp. HT1-2 around GFF4313

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,320,260	+		GFF4311	0.81	+1.1
4,320,268	-		GFF4311	0.82	-0.8
4,320,271	+		GFF4311	0.82	+1.3
4,320,292	+		GFF4311	0.85	-1.6
4,320,292	+		GFF4311	0.85	-0.5
4,320,292	+		GFF4311	0.85	-1.1
4,320,292	+		GFF4311	0.85	-0.2
4,320,292	+		GFF4311	0.85	+0.4
4,320,292	+		GFF4311	0.85	+0.1
4,320,292	+		GFF4311	0.85	-0.8
4,320,300	-		GFF4311	0.86	+0.1
4,320,300	-		GFF4311	0.86	-0.7
4,320,300	-		GFF4311	0.86	-0.4
4,320,300	-		GFF4311	0.86	-0.1
4,320,300	-		GFF4311	0.86	+0.4
4,320,311	+		GFF4311	0.87	-0.5
4,320,382	-				-1.9
4,320,384	+				-1.3
4,320,384	+				-0.5
4,320,408	+				-0.0
4,320,408	+				-1.4
4,320,408	+				-1.1
4,320,408	+				-0.0
4,320,408	+				+0.9
4,320,408	+				-1.2
4,320,408	+				-1.6
4,320,408	+				-0.3
4,320,408	+				+0.0
4,320,408	+				+0.3
4,320,408	+				+0.8
4,320,408	+				-0.3
4,320,408	+				+1.0
4,320,408	+				+0.7
4,320,415	+				-1.4
4,320,415	+				-2.2
4,320,416	-				-0.5
4,320,416	-				-0.0
4,320,416	-				+0.1
4,320,416	-				+0.6
4,320,416	-				-1.7
4,320,416	-				-0.3
4,320,416	-				-0.5
4,320,416	-				-1.5
4,320,416	-				+0.2
4,320,416	-				-1.0
4,320,416	-				-0.2
4,320,416	-				+0.1
4,320,416	-				-0.4
4,320,416	-				+0.2
4,320,416	-				+0.8
4,320,416	-				-0.4
4,320,416	-				-0.9
4,320,416	-				-0.5
4,320,416	-				+0.2
4,320,423	+				-0.3
4,320,423	+				+0.2
4,320,423	+				-0.3
4,320,423	+				+0.7
4,320,423	+				+0.7
4,320,423	+				-0.8
4,320,423	+				-0.6
4,320,423	+				-0.2
4,320,423	+				-0.7
4,320,423	+				-0.5
4,320,423	+				+0.2
4,320,423	+				-0.7
4,320,423	+				+0.9
4,320,423	+				-0.3
4,320,423	+				-2.7
4,320,423	-				-0.5
4,320,423	-				-1.4
4,320,431	-				+0.3
4,320,431	-				-0.5
4,320,431	-				-1.2
4,320,431	-				-1.7
4,320,431	-				-0.4
4,320,431	-				-0.1
4,320,431	-				+0.1
4,320,431	-				-0.6
4,320,431	-				+0.3
4,320,431	-				-0.9
4,320,431	-				-1.1
4,320,431	-				-1.5
4,320,431	-				-0.8
4,320,431	-				-0.8
4,320,431	-				+0.7
4,320,431	-				-1.8
4,320,431	-				-0.3
4,320,431	-				-0.0
4,320,431	-				+1.6
4,320,453	+				+1.2
4,320,455	-				+0.3
4,320,458	+				+0.1
4,320,461	-				-1.7
4,320,470	-				+1.1
4,320,483	+				-0.5
4,320,496	-		GFF4312	0.11	+0.3
4,320,505	+		GFF4312	0.12	+0.2
4,320,506	-		GFF4312	0.12	-0.2
4,320,506	-		GFF4312	0.12	-0.8
4,320,514	-		GFF4312	0.13	+0.5
4,320,532	-		GFF4312	0.15	+0.4
4,320,539	-		GFF4312	0.16	+0.5
4,320,555	+		GFF4312	0.18	-0.5
4,320,555	+		GFF4312	0.18	-0.4
4,320,563	-		GFF4312	0.19	-2.0
4,320,573	-		GFF4312	0.20	+1.0
4,320,584	+		GFF4312	0.21	-0.1
4,320,591	-		GFF4312	0.22	+0.5
4,320,592	-		GFF4312	0.22	-0.1
4,320,600	-		GFF4312	0.23	+0.1
4,320,615	+		GFF4312	0.25	-0.3
4,320,615	+		GFF4312	0.25	-0.7
4,320,615	+		GFF4312	0.25	+0.4
4,320,623	-		GFF4312	0.26	-0.7
4,320,665	-		GFF4312	0.31	-2.9
4,320,669	+		GFF4312	0.32	+0.9
4,320,715	+		GFF4312	0.38	-0.7
4,320,732	-		GFF4312	0.40	+0.2
4,320,759	+		GFF4312	0.43	-2.4
4,320,763	+		GFF4312	0.43	-0.4
4,320,765	+		GFF4312	0.44	-0.1
4,320,773	-		GFF4312	0.45	+0.3
4,320,774	+		GFF4312	0.45	+0.9
4,320,774	+		GFF4312	0.45	-1.2
4,320,780	+		GFF4312	0.46	-1.1
4,320,780	+		GFF4312	0.46	-0.6
4,320,780	+		GFF4312	0.46	-0.4
4,320,782	+		GFF4312	0.46	-1.1
4,320,803	-		GFF4312	0.48	-0.5
4,320,816	-		GFF4312	0.50	+0.9
4,320,817	+		GFF4312	0.50	-0.0
4,320,817	+		GFF4312	0.50	-1.4
4,320,817	+		GFF4312	0.50	+0.0
4,320,825	-		GFF4312	0.51	-0.9
4,320,842	-		GFF4312	0.53	-0.7
4,320,861	+		GFF4312	0.55	-1.2
4,320,861	-		GFF4312	0.55	-0.2
4,320,861	-		GFF4312	0.55	-0.4
4,320,869	-		GFF4312	0.56	-2.7
4,320,879	+		GFF4312	0.58	+0.1
4,320,879	-		GFF4312	0.58	-1.8
4,320,887	-		GFF4312	0.59	+1.1
4,320,888	-		GFF4312	0.59	-0.5
4,320,931	+		GFF4312	0.64	-1.7
4,320,931	+		GFF4312	0.64	+1.1
4,320,931	-		GFF4312	0.64	-2.0
4,320,939	-		GFF4312	0.65	-0.5
4,320,939	-		GFF4312	0.65	-0.5
4,320,951	-		GFF4312	0.67	-0.4
4,320,963	+		GFF4312	0.68	+0.8
4,320,968	-		GFF4312	0.69	+0.3
4,320,994	-		GFF4312	0.72	+0.2
4,320,994	-		GFF4312	0.72	+1.3
4,320,995	-		GFF4312	0.72	-0.4
4,321,009	-		GFF4312	0.74	-2.4
4,321,020	+		GFF4312	0.75	-0.1
4,321,029	+		GFF4312	0.76	-0.9
4,321,034	+		GFF4312	0.77	-1.0
4,321,037	-		GFF4312	0.77	-2.2
4,321,057	-		GFF4312	0.80	-0.9
4,321,061	+		GFF4312	0.80	+0.2
4,321,065	-		GFF4312	0.81	-1.3
4,321,068	+		GFF4312	0.81	-0.1
4,321,068	+		GFF4312	0.81	-0.1
4,321,068	+		GFF4312	0.81	+0.2
4,321,068	+		GFF4312	0.81	-1.0
4,321,068	+		GFF4312	0.81	-1.9
4,321,076	-		GFF4312	0.82	+0.7
4,321,076	-		GFF4312	0.82	+0.1
4,321,104	+		GFF4312	0.85	-2.7
4,321,112	-		GFF4312	0.86	+0.5
4,321,131	+		GFF4312	0.89	+0.3
4,321,138	+		GFF4312	0.90	+0.1
4,321,139	-		GFF4312	0.90	+1.1
4,321,139	-		GFF4312	0.90	-0.3
4,321,139	-		GFF4312	0.90	-1.2
4,321,146	-				-1.4
4,321,146	-				-0.0
4,321,205	-				-0.2
4,321,211	+				+0.3
4,321,226	-				+0.5
4,321,246	-				+0.9
4,321,246	-				-1.4
4,321,250	+				+0.3
4,321,258	-				+0.8
4,321,258	-				-0.2
4,321,274	-				-0.2
4,321,274	-				+0.1
4,321,296	-				-1.2
4,321,373	+				+0.2
4,321,379	+		GFF4313	0.10	-0.4
4,321,380	+		GFF4313	0.10	-0.1
4,321,385	+		GFF4313	0.10	+0.3
4,321,388	-		GFF4313	0.11	-2.2
4,321,388	-		GFF4313	0.11	+0.2
4,321,389	+		GFF4313	0.11	-0.2
4,321,389	+		GFF4313	0.11	-0.9
4,321,389	+		GFF4313	0.11	-2.3
4,321,389	+		GFF4313	0.11	-0.2
4,321,407	-		GFF4313	0.12	-1.4
4,321,431	-		GFF4313	0.14	+0.7
4,321,457	+		GFF4313	0.16	-0.5
4,321,467	+		GFF4313	0.17	-0.5
4,321,475	-		GFF4313	0.17	+1.2
4,321,477	-		GFF4313	0.17	-0.7
4,321,493	+		GFF4313	0.19	-0.0
4,321,518	+		GFF4313	0.21	+1.2
4,321,523	+		GFF4313	0.21	-1.1
4,321,523	-		GFF4313	0.21	-0.9
4,321,525	-		GFF4313	0.21	-0.6
4,321,525	-		GFF4313	0.21	+0.5
4,321,529	+		GFF4313	0.21	+1.0
4,321,543	+		GFF4313	0.22	-0.3
4,321,548	+		GFF4313	0.23	-0.0
4,321,550	+		GFF4313	0.23	-0.9
4,321,551	-		GFF4313	0.23	+0.7
4,321,555	+		GFF4313	0.23	-1.9
4,321,559	-		GFF4313	0.24	+0.2
4,321,598	+		GFF4313	0.27	-0.5
4,321,599	+		GFF4313	0.27	-1.3
4,321,600	-		GFF4313	0.27	-1.5
4,321,601	+		GFF4313	0.27	-1.9
4,321,605	+		GFF4313	0.27	-1.6
4,321,607	+		GFF4313	0.27	+0.5
4,321,607	+		GFF4313	0.27	+0.3
4,321,650	+		GFF4313	0.31	-0.7
4,321,662	+		GFF4313	0.31	-0.5
4,321,662	+		GFF4313	0.31	-2.0
4,321,667	+		GFF4313	0.32	+0.0
4,321,670	-		GFF4313	0.32	-2.8
4,321,670	-		GFF4313	0.32	+0.1
4,321,672	+		GFF4313	0.32	+0.1
4,321,680	-		GFF4313	0.33	-0.7
4,321,680	-		GFF4313	0.33	-1.9
4,321,680	-		GFF4313	0.33	-1.4
4,321,687	-		GFF4313	0.33	-0.5
4,321,711	-		GFF4313	0.35	+1.2
4,321,735	+		GFF4313	0.37	+0.6
4,321,736	-		GFF4313	0.37	-1.4
4,321,736	-		GFF4313	0.37	-0.7
4,321,736	-		GFF4313	0.37	-0.4
4,321,748	+		GFF4313	0.38	+0.1
4,321,748	+		GFF4313	0.38	-1.1
4,321,748	+		GFF4313	0.38	-0.8
4,321,748	+		GFF4313	0.38	+0.2
4,321,748	+		GFF4313	0.38	+0.2
4,321,748	+		GFF4313	0.38	-2.4
4,321,748	+		GFF4313	0.38	+0.8
4,321,753	+		GFF4313	0.38	-0.8
4,321,756	-		GFF4313	0.39	-1.2
4,321,756	-		GFF4313	0.39	+0.5
4,321,756	-		GFF4313	0.39	+0.1
4,321,756	-		GFF4313	0.39	-1.3
4,321,756	-		GFF4313	0.39	-0.4
4,321,756	-		GFF4313	0.39	-2.2
4,321,763	+		GFF4313	0.39	-0.4
4,321,771	-		GFF4313	0.40	-0.9
4,321,773	+		GFF4313	0.40	+0.3
4,321,773	+		GFF4313	0.40	-0.0
4,321,773	+		GFF4313	0.40	-0.4
4,321,778	-		GFF4313	0.40	-1.0
4,321,783	+		GFF4313	0.41	-0.7
4,321,795	+		GFF4313	0.42	+0.1
4,321,811	-		GFF4313	0.43	+0.4
4,321,818	+		GFF4313	0.43	-1.1
4,321,819	-		GFF4313	0.43	+0.8
4,321,828	-		GFF4313	0.44	-1.9
4,321,836	-		GFF4313	0.45	-0.4
4,321,845	+		GFF4313	0.45	+0.0
4,321,845	+		GFF4313	0.45	-1.8
4,321,845	+		GFF4313	0.45	-1.6
4,321,845	+		GFF4313	0.45	+0.4
4,321,845	+		GFF4313	0.45	-0.7
4,321,846	+		GFF4313	0.45	-1.3
4,321,853	-		GFF4313	0.46	-0.8
4,321,853	-		GFF4313	0.46	-1.2
4,321,853	-		GFF4313	0.46	-0.1
4,321,853	-		GFF4313	0.46	-0.7
4,321,896	-		GFF4313	0.49	+1.1
4,321,899	-		GFF4313	0.49	+0.1
4,321,901	-		GFF4313	0.50	-2.1
4,321,909	-		GFF4313	0.50	-0.5
4,321,911	+		GFF4313	0.50	+0.7
4,321,924	+		GFF4313	0.51	-0.5
4,321,929	+		GFF4313	0.52	+1.2
4,321,932	-		GFF4313	0.52	-0.2
4,321,937	+		GFF4313	0.52	-1.6
4,321,954	+		GFF4313	0.54	-0.7
4,321,960	+		GFF4313	0.54	-0.5
4,321,962	-		GFF4313	0.54	-2.2
4,321,976	+		GFF4313	0.55	+0.7
4,321,984	-		GFF4313	0.56	-2.3
4,321,995	+		GFF4313	0.57	+0.0
4,322,002	+		GFF4313	0.57	-0.9
4,322,002	+		GFF4313	0.57	-0.8
4,322,002	+		GFF4313	0.57	-0.9
4,322,002	+		GFF4313	0.57	-1.4
4,322,002	+		GFF4313	0.57	+0.3
4,322,002	+		GFF4313	0.57	+0.6
4,322,005	-		GFF4313	0.57	-1.0
4,322,007	+		GFF4313	0.58	-0.8
4,322,010	-		GFF4313	0.58	-1.8
4,322,010	-		GFF4313	0.58	-2.5
4,322,010	-		GFF4313	0.58	-0.7
4,322,010	-		GFF4313	0.58	-2.9
4,322,010	-		GFF4313	0.58	-1.7
4,322,010	-		GFF4313	0.58	-0.9
4,322,010	-		GFF4313	0.58	-1.5
4,322,010	-		GFF4313	0.58	-2.1
4,322,010	-		GFF4313	0.58	+0.8
4,322,012	+		GFF4313	0.58	-0.8
4,322,039	+		GFF4313	0.60	+0.8
4,322,044	+		GFF4313	0.60	+0.7
4,322,047	-		GFF4313	0.61	-0.4
4,322,047	-		GFF4313	0.61	-1.2
4,322,047	-		GFF4313	0.61	-0.2
4,322,055	+		GFF4313	0.61	-0.2
4,322,057	+		GFF4313	0.61	-0.0
4,322,073	-		GFF4313	0.63	+0.6
4,322,091	+		GFF4313	0.64	+0.6
4,322,101	+		GFF4313	0.65	-1.2
4,322,134	+		GFF4313	0.67	-0.0
4,322,137	+		GFF4313	0.67	+0.6
4,322,137	+		GFF4313	0.67	+0.1
4,322,137	+		GFF4313	0.67	+0.2
4,322,171	-		GFF4313	0.70	-1.8
4,322,185	-		GFF4313	0.71	-0.1
4,322,186	+		GFF4313	0.71	+0.3
4,322,187	-		GFF4313	0.71	+0.9
4,322,213	+		GFF4313	0.73	-2.2
4,322,247	+		GFF4313	0.76	-1.3
4,322,247	+		GFF4313	0.76	+0.2
4,322,247	+		GFF4313	0.76	-1.3
4,322,247	+		GFF4313	0.76	+0.8
4,322,255	-		GFF4313	0.76	-0.8
4,322,255	-		GFF4313	0.76	+0.0
4,322,255	-		GFF4313	0.76	+1.2
4,322,255	-		GFF4313	0.76	-1.8
4,322,255	-		GFF4313	0.76	-1.9
4,322,258	+		GFF4313	0.77	+1.2
4,322,266	-		GFF4313	0.77	-1.3
4,322,281	-		GFF4313	0.78	-2.0
4,322,289	-		GFF4313	0.79	-0.4
4,322,333	-		GFF4313	0.82	-0.4
4,322,337	+		GFF4313	0.83	-2.0
4,322,337	-		GFF4313	0.83	-0.1
4,322,340	-		GFF4313	0.83	-0.2
4,322,345	-		GFF4313	0.83	+0.2
4,322,352	+		GFF4313	0.84	-0.7
4,322,352	+		GFF4313	0.84	-1.4
4,322,360	-		GFF4313	0.84	-0.6
4,322,360	-		GFF4313	0.84	-0.4
4,322,362	-		GFF4313	0.84	-0.9
4,322,364	+		GFF4313	0.85	-1.6
4,322,364	+		GFF4313	0.85	-0.8
4,322,373	+		GFF4313	0.85	-0.3
4,322,373	+		GFF4313	0.85	-0.9
4,322,373	+		GFF4313	0.85	-0.9
4,322,373	+		GFF4313	0.85	+0.3
4,322,373	-		GFF4313	0.85	-0.3
4,322,380	+		GFF4313	0.86	-0.9
4,322,381	-		GFF4313	0.86	-0.3
4,322,381	-		GFF4313	0.86	-0.6
4,322,391	-		GFF4313	0.87	+0.8
4,322,393	+		GFF4313	0.87	-0.9
4,322,395	-		GFF4313	0.87	-1.5
4,322,395	-		GFF4313	0.87	-0.9
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4,322,440	+				+0.4
4,322,440	+				+0.4
4,322,440	+				-2.2
4,322,445	+				-1.0
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4,322,453	-				+1.9
4,322,453	-				-2.3
4,322,453	-				+0.4
4,322,453	-				-1.5
4,322,458	-				+0.6
4,322,506	+				-0.8
4,322,546	-				-1.0
4,322,552	-				+0.9
4,322,562	-				-0.7
4,322,562	-				+0.8
4,322,564	+				-0.1
4,322,568	+				-0.3
4,322,576	+				-1.2
4,322,576	+				-1.9
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4,322,576	+				-0.7
4,322,576	+				+0.7
4,322,576	+				-1.5
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4,322,584	-				-1.5
4,322,584	-				+1.0
4,322,584	-				+0.1
4,322,584	-				-2.2
4,322,584	-				+0.2
4,322,587	+				-0.2
4,322,602	+				+0.7
4,322,610	-				-0.4
4,322,610	-				+0.7
4,322,612	+				+0.7
4,322,612	+				+1.0
4,322,612	+				+0.6
4,322,612	+				+0.4
4,322,612	+				-1.9
4,322,612	+				+0.2
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4,322,615	-				+0.5
4,322,620	-				-1.0
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4,322,635	-				-0.2
4,322,635	-				+0.5
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4,322,894	+		GFF4314	0.41	+1.4
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4,323,301	+				-1.3
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4,323,309	-				-1.1
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4,323,318	+				-0.3
4,323,318	+				-0.2
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4,323,349	-				-1.1
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4,323,349	-				-0.5
4,323,349	-				-0.7
4,323,349	-				-2.7
4,323,349	-				-0.4
4,323,349	-				-0.4
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4,323,351	+				+0.1
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4,323,351	+				+1.0
4,323,351	+				+1.3
4,323,351	+				-1.0
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4,323,359	-				-1.6
4,323,359	-				-2.2
4,323,359	-				-1.9
4,323,364	-				+0.7
4,323,374	-				+0.3
4,323,402	-				-0.4
4,323,430	-				-1.3
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